Wall clock time and date at job start Tue Mar 31 2020 17:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00038 * 2 1 4 4 C 1.50695 * 120.00129 * 180.02562 * 2 1 3 5 5 O 1.42902 * 109.47394 * 359.97438 * 4 2 1 6 6 C 1.35897 * 117.00574 * 180.02562 * 5 4 2 7 7 C 1.38819 * 120.01250 * 359.72343 * 6 5 4 8 8 C 1.38185 * 120.09501 * 179.70377 * 7 6 5 9 9 C 1.38158 * 120.12667 * 0.59324 * 8 7 6 10 10 C 1.38945 * 120.03485 * 359.68265 * 9 8 7 11 11 N 1.39712 * 120.05000 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00065 * 213.34570 * 11 10 9 13 13 O 1.21380 * 120.00051 * 5.26937 * 12 11 10 14 14 C 1.49355 * 120.00246 * 185.27507 * 12 11 10 15 15 O 1.21366 * 119.99694 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00565 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00699 * 179.97438 * 16 14 12 18 18 C 1.52992 * 109.47372 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47107 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00270 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00157 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00208 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99840 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47585 * 90.00312 * 23 21 19 25 25 H 1.48510 * 109.46806 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47213 * 329.99828 * 23 21 19 27 27 C 1.38564 * 120.02212 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99983 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47441 * 300.00986 * 3 2 1 32 32 H 1.09007 * 109.46696 * 60.00523 * 3 2 1 33 33 H 1.09003 * 109.47668 * 119.99548 * 4 2 1 34 34 H 1.09004 * 109.47265 * 239.99543 * 4 2 1 35 35 H 1.07998 * 119.95629 * 359.97438 * 7 6 5 36 36 H 1.07993 * 119.93910 * 180.29725 * 8 7 6 37 37 H 1.07996 * 119.97911 * 179.70683 * 9 8 7 38 38 H 0.97008 * 119.99926 * 33.33538 * 11 10 9 39 39 H 0.97005 * 119.99452 * 359.97438 * 16 14 12 40 40 H 1.08997 * 109.46802 * 300.00352 * 17 16 14 41 41 H 1.09002 * 109.46648 * 59.99926 * 17 16 14 42 42 H 1.08997 * 109.47730 * 300.00134 * 18 17 16 43 43 H 1.09002 * 109.47009 * 60.00497 * 18 17 16 44 44 H 0.96999 * 119.99954 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.06134 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 8 1.1349 -2.3913 -0.0005 6 6 1.6543 -3.6471 -0.0004 7 6 3.0305 -3.8293 -0.0063 8 6 3.5605 -5.1055 0.0000 9 6 2.7229 -6.2042 -0.0003 10 6 1.3446 -6.0280 -0.0002 11 7 0.4973 -7.1389 0.0000 12 6 -0.6867 -7.0835 -0.6415 13 8 -0.9755 -6.1048 -1.2989 14 6 -1.6434 -8.2262 -0.5434 15 8 -1.3544 -9.2048 0.1136 16 7 -2.8276 -8.1706 -1.1844 17 6 -3.7658 -9.2917 -1.0887 18 6 -5.0228 -8.9756 -1.9016 19 6 -5.9881 -10.1286 -1.8026 20 1 -5.7307 -10.9999 -1.2186 21 6 -7.1997 -10.0716 -2.4583 22 7 -8.0419 -11.0781 -2.3723 23 14 -7.6442 -8.5656 -3.4700 24 1 -7.1783 -8.7528 -4.8676 25 1 -9.1176 -8.3799 -3.4601 26 1 -6.9902 -7.3667 -2.8867 27 6 0.8106 -4.7463 0.0002 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 3.1351 1.1059 -0.0005 31 1 1.8000 1.8768 -0.8899 32 1 1.8001 1.8766 0.8901 33 1 2.6901 -1.3625 -0.8906 34 1 2.6902 -1.3632 0.8894 35 1 3.6879 -2.9725 -0.0113 36 1 4.6314 -5.2443 0.0002 37 1 3.1397 -7.2005 -0.0002 38 1 0.7613 -7.9501 0.4618 39 1 -3.0587 -7.3882 -1.7093 40 1 -3.2958 -10.1933 -1.4815 41 1 -4.0384 -9.4491 -0.0452 42 1 -5.4927 -8.0741 -1.5084 43 1 -4.7505 -8.8179 -2.9452 44 1 -8.8941 -11.0381 -2.8339 45 1 -0.2603 -4.6063 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273059928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:15 Heat of formation + Delta-G solvation = -85.332579 kcal Electronic energy + Delta-G solvation = -26685.177733 eV Core-core repulsion = 22667.761090 eV Total energy + Delta-G solvation = -4017.416643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.25451 -41.13078 -40.02343 -38.67151 -37.03011 -36.30082 -35.54831 -34.79152 -32.18006 -31.59903 -30.56472 -28.13197 -27.99603 -27.58891 -25.59898 -23.86169 -23.00455 -22.60965 -21.49822 -20.10751 -19.59977 -19.13411 -19.03489 -17.94956 -17.39242 -17.06318 -16.97721 -16.93351 -16.84173 -16.33443 -16.22587 -15.96199 -15.34274 -15.12242 -14.80971 -14.62584 -14.55997 -14.50469 -14.35049 -13.79160 -13.60891 -13.41787 -13.09272 -13.04906 -12.79082 -12.64367 -12.43492 -12.26707 -12.22847 -12.14864 -11.94295 -11.80255 -11.52742 -11.41732 -10.81280 -10.80268 -10.31214 -10.01013 -9.54551 -9.14033 -8.31385 -6.38084 -0.17720 0.40162 0.50868 1.11468 1.21627 1.38419 1.40006 1.50975 1.95444 2.06501 2.34947 2.54619 2.74316 3.03785 3.26316 3.70073 3.88053 4.06168 4.12627 4.20106 4.21406 4.23186 4.30647 4.33408 4.36920 4.47253 4.56515 4.69013 4.70400 4.85076 4.92468 5.00598 5.12619 5.13159 5.16581 5.25703 5.28625 5.35024 5.42329 5.56498 5.59361 5.65444 5.80787 5.88651 6.17475 6.24837 6.43406 6.56920 6.69171 6.79427 7.26469 8.84717 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.002138 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.822532 B =13095.155394 C =15000.771696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.110 4.110 4 C 0.087 3.913 5 O -0.332 6.332 6 C 0.135 3.865 7 C -0.217 4.217 8 C -0.052 4.052 9 C -0.173 4.173 10 C 0.165 3.835 11 N -0.633 5.633 12 C 0.515 3.485 13 O -0.515 6.515 14 C 0.507 3.493 15 O -0.542 6.542 16 N -0.685 5.685 17 C 0.141 3.859 18 C -0.018 4.018 19 C -0.536 4.536 20 H 0.037 0.963 21 C 0.008 3.992 22 N -0.946 5.946 23 Si 0.951 3.049 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.242 1.242 27 C -0.183 4.183 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.435 0.565 39 H 0.418 0.582 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.268 0.732 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.802 23.571 5.401 38.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.145 4.145 3 C -0.166 4.166 4 C 0.014 3.986 5 O -0.247 6.247 6 C 0.090 3.910 7 C -0.236 4.236 8 C -0.070 4.070 9 C -0.193 4.193 10 C 0.072 3.928 11 N -0.280 5.280 12 C 0.297 3.703 13 O -0.389 6.389 14 C 0.287 3.713 15 O -0.420 6.420 16 N -0.337 5.337 17 C 0.019 3.981 18 C -0.056 4.056 19 C -0.574 4.574 20 H 0.056 0.944 21 C -0.189 4.189 22 N -0.586 5.586 23 Si 0.774 3.226 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.166 1.166 27 C -0.204 4.204 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.275 0.725 39 H 0.255 0.745 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 29.355 23.527 5.353 37.999 hybrid contribution -1.078 -0.136 -0.411 1.162 sum 28.277 23.390 4.942 37.029 Atomic orbital electron populations 1.23769 0.96217 1.02152 1.00690 1.21869 0.95801 0.94987 1.01808 1.20779 1.00477 0.92202 1.03190 1.21860 0.90935 0.82580 1.03274 1.86033 1.37372 1.12622 1.88632 1.18798 0.92503 0.83835 0.95910 1.21597 0.92640 1.00341 1.08988 1.21187 1.01357 0.90229 0.94263 1.21187 0.89735 1.01830 1.06565 1.17544 0.90343 0.85229 0.99728 1.43052 1.16573 1.16657 1.51747 1.20187 0.83059 0.87273 0.79765 1.90804 1.75781 1.33451 1.38907 1.19959 0.83261 0.87149 0.80945 1.90761 1.76593 1.33607 1.41067 1.45980 1.16222 1.22255 1.49207 1.21330 0.88567 0.87481 1.00740 1.19702 0.92466 0.96950 0.96484 1.21188 1.01676 1.03123 1.31407 0.94433 1.25975 0.95940 0.99590 0.97437 1.70054 1.10013 1.33643 1.44895 0.85645 0.77475 0.80121 0.79328 1.19080 1.21134 1.16569 1.20245 1.00169 0.90355 1.09627 0.86996 0.89574 0.90207 0.90557 0.90413 0.89321 0.89000 0.82527 0.81316 0.82674 0.72499 0.74512 0.91836 0.91994 0.94683 0.94722 0.92305 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 13.71 67.78 0.93 -2.32 16 2 C -0.14 -1.95 6.05 -16.49 -0.10 -2.05 16 3 C -0.11 -0.79 10.05 71.23 0.72 -0.08 16 4 C 0.09 1.16 5.07 71.23 0.36 1.52 16 5 O -0.33 -7.18 8.53 -92.39 -0.79 -7.97 16 6 C 0.14 2.88 6.68 22.49 0.15 3.03 16 7 C -0.22 -3.01 9.04 22.40 0.20 -2.81 16 8 C -0.05 -0.59 10.03 22.24 0.22 -0.37 16 9 C -0.17 -2.55 9.96 22.42 0.22 -2.33 16 10 C 0.17 3.58 6.27 38.20 0.24 3.82 16 11 N -0.63 -14.20 5.32 -304.89 -1.62 -15.82 16 12 C 0.52 14.58 7.62 87.24 0.66 15.24 16 13 O -0.51 -16.60 14.16 -3.34 -0.05 -16.64 16 14 C 0.51 16.09 7.89 87.24 0.69 16.77 16 15 O -0.54 -19.12 16.48 -3.30 -0.05 -19.18 16 16 N -0.68 -22.61 5.55 -464.52 -2.58 -25.19 16 17 C 0.14 5.56 5.61 86.38 0.48 6.04 16 18 C -0.02 -0.81 4.16 29.85 0.12 -0.69 16 19 C -0.54 -30.11 9.66 25.60 0.25 -29.86 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 21 C 0.01 0.47 5.47 84.65 0.46 0.94 16 22 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 23 Si 0.95 43.00 27.47 68.60 1.88 44.89 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 27 C -0.18 -4.66 8.59 22.50 0.19 -4.47 16 28 H 0.11 1.52 8.05 -2.91 -0.02 1.50 16 29 H 0.09 1.88 6.84 -2.91 -0.02 1.86 16 30 H 0.08 0.31 8.00 -2.39 -0.02 0.30 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.09 0.88 7.65 -2.39 -0.02 0.86 16 34 H 0.09 0.85 7.67 -2.39 -0.02 0.83 16 35 H 0.16 1.21 6.29 -2.91 -0.02 1.19 16 36 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.43 7.90 8.30 -92.70 -0.77 7.13 16 39 H 0.42 12.58 7.94 -92.70 -0.74 11.84 16 40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 43 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.11 3.51 6.42 -2.91 -0.02 3.49 16 Total: -1.00 -73.40 385.00 2.37 -71.03 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.53 Total: 24.73 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.81 Total: 2.39 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -3.90 Total: -99.25 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.89 Total: -43.79 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Total: -73.40 2.37 -71.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.307 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds