Wall clock time and date at job start Tue Mar 31 2020 17:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47634 * 2 1 4 4 H 1.09003 * 109.47314 * 54.57880 * 3 2 1 5 5 C 1.50697 * 109.47530 * 174.57949 * 3 2 1 6 6 H 1.08000 * 119.99722 * 94.65764 * 5 3 2 7 7 C 1.37879 * 120.00297 * 274.65850 * 5 3 2 8 8 N 1.31510 * 119.99983 * 174.84274 * 7 5 3 9 9 Si 1.86799 * 119.99400 * 354.84245 * 7 5 3 10 10 H 1.48506 * 109.47293 * 275.09319 * 9 7 5 11 11 H 1.48497 * 109.47330 * 35.09714 * 9 7 5 12 12 H 1.48505 * 109.46738 * 155.09615 * 9 7 5 13 13 N 1.46504 * 109.47147 * 294.58001 * 3 2 1 14 14 C 1.34777 * 119.99862 * 84.99605 * 13 3 2 15 15 O 1.21358 * 120.00273 * 359.97438 * 14 13 3 16 16 C 1.49335 * 119.99897 * 180.02562 * 14 13 3 17 17 O 1.21386 * 120.00229 * 4.91934 * 16 14 13 18 18 N 1.34778 * 119.99794 * 184.91962 * 16 14 13 19 19 C 1.47293 * 121.14580 * 1.32326 * 18 16 14 20 20 C 1.53142 * 107.79741 * 221.87885 * 19 18 16 21 21 H 1.08995 * 109.40623 * 61.88651 * 20 19 18 22 22 C 1.53007 * 109.74941 * 182.15079 * 20 19 18 23 23 O 1.42961 * 108.91536 * 302.11810 * 20 19 18 24 24 C 1.35877 * 117.74415 * 49.30638 * 23 20 19 25 25 C 1.38706 * 119.66445 * 159.92440 * 24 23 20 26 26 C 1.38210 * 120.05326 * 179.69464 * 25 24 23 27 27 C 1.38300 * 120.30716 * 359.97084 * 26 25 24 28 28 C 1.38230 * 120.07643 * 0.07744 * 27 26 25 29 29 C 1.38653 * 119.86864 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46996 * 59.99949 * 1 2 3 31 31 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47075 * 300.00566 * 1 2 3 33 33 H 1.09003 * 109.47075 * 239.99433 * 2 1 3 34 34 H 1.09004 * 109.46996 * 120.00051 * 2 1 3 35 35 H 0.97007 * 119.99322 * 180.02562 * 8 7 5 36 36 H 0.96997 * 120.00253 * 265.00048 * 13 3 2 37 37 H 1.08991 * 109.83659 * 341.49818 * 19 18 16 38 38 H 1.09009 * 109.82723 * 102.45104 * 19 18 16 39 39 H 1.09002 * 109.47075 * 179.55959 * 22 20 19 40 40 H 1.08995 * 109.47049 * 299.56036 * 22 20 19 41 41 H 1.09004 * 109.47145 * 59.55984 * 22 20 19 42 42 H 1.08000 * 119.97498 * 359.66393 * 25 24 23 43 43 H 1.07994 * 119.84384 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.96308 * 180.08360 * 27 26 25 45 45 H 1.07991 * 120.06514 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5997 1.9836 0.8375 5 6 3.5411 1.4445 0.1342 6 1 4.1620 1.4918 -0.7482 7 6 4.1217 1.3860 1.3834 8 7 5.4280 1.2855 1.4974 9 14 3.0526 1.4496 2.9139 10 1 2.7734 2.8655 3.2643 11 1 1.7730 0.7425 2.6537 12 1 3.7617 0.7915 4.0406 13 7 1.6612 2.0944 -1.2561 14 6 0.4448 2.6611 -1.3810 15 8 -0.3369 2.6308 -0.4532 16 6 0.0584 3.3251 -2.6616 17 8 0.8032 3.2774 -3.6189 18 7 -1.1173 3.9775 -2.7543 19 6 -2.0272 4.0758 -1.6002 20 6 -3.4542 3.8515 -2.1086 21 1 -3.5341 2.8510 -2.5337 22 6 -4.4443 3.9974 -0.9513 23 8 -3.7461 4.8244 -3.1145 24 6 -2.8406 4.9926 -4.1136 25 6 -3.2343 5.5850 -5.3044 26 6 -2.3185 5.7658 -6.3235 27 6 -1.0065 5.3587 -6.1631 28 6 -0.6046 4.7664 -4.9806 29 6 -1.5193 4.5816 -3.9551 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8363 1.2440 2.3763 36 1 2.2858 2.1182 -1.9978 37 1 -1.7735 3.3139 -0.8633 38 1 -1.9493 5.0661 -1.1513 39 1 -5.4588 3.8446 -1.3196 40 1 -4.2201 3.2548 -0.1855 41 1 -4.3594 4.9967 -0.5243 42 1 -4.2575 5.9049 -5.4354 43 1 -2.6288 6.2270 -7.2494 44 1 -0.2951 5.5039 -6.9627 45 1 0.4198 4.4483 -4.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275762848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:03 Heat of formation + Delta-G solvation = -51.574732 kcal Electronic energy + Delta-G solvation = -29434.722375 eV Core-core repulsion = 25418.769582 eV Total energy + Delta-G solvation = -4015.952793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68382 -39.98454 -38.57501 -37.66682 -36.15304 -35.14488 -32.77899 -32.52211 -31.65869 -30.61088 -29.25668 -27.89652 -26.86294 -24.99045 -23.38014 -22.91798 -22.62154 -20.85457 -20.06386 -19.91165 -18.48881 -17.86554 -17.52633 -16.81693 -16.26508 -16.13480 -15.95879 -15.43668 -15.23637 -14.80055 -14.50670 -14.19598 -14.00193 -13.83372 -13.71382 -13.25110 -13.18934 -12.94132 -12.66854 -12.59522 -12.27970 -12.06740 -12.00755 -11.97339 -11.81789 -11.35801 -11.09240 -11.02116 -10.95542 -10.86903 -10.59641 -10.17792 -10.08623 -9.94647 -9.40691 -8.91194 -8.82262 -8.59491 -8.41713 -7.93632 -6.33531 -4.38552 0.97071 1.29737 1.74942 2.23389 3.00887 3.16689 3.25516 3.29228 3.34476 3.56740 3.74724 4.21181 4.30368 4.54878 4.69371 4.74495 4.77219 4.95963 5.02744 5.13426 5.22955 5.31813 5.38205 5.42697 5.48946 5.70312 5.82581 5.85974 5.88221 5.91583 5.97232 6.05103 6.16703 6.32781 6.41058 6.45580 6.59529 6.69851 6.76015 6.77870 6.92249 7.01152 7.13916 7.25763 7.28947 7.55418 7.90649 8.28858 8.39810 8.68166 9.25195 10.77916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.003468 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.022759 B = 8070.766242 C = 9047.703327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.238 3.762 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.082 0.918 7 C 0.084 3.916 8 N -0.883 5.883 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.255 1.255 12 H -0.284 1.284 13 N -0.653 5.653 14 C 0.501 3.499 15 O -0.526 6.526 16 C 0.509 3.491 17 O -0.499 6.499 18 N -0.529 5.529 19 C 0.022 3.978 20 C 0.075 3.925 21 H 0.076 0.924 22 C -0.141 4.141 23 O -0.314 6.314 24 C 0.101 3.899 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.132 4.132 28 C -0.118 4.118 29 C 0.074 3.926 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.270 0.730 36 H 0.409 0.591 37 H 0.177 0.823 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 5.917 -9.355 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.136 3.864 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.100 0.900 7 C -0.121 4.121 8 N -0.519 5.519 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.180 1.180 12 H -0.210 1.210 13 N -0.301 5.301 14 C 0.281 3.719 15 O -0.408 6.408 16 C 0.295 3.705 17 O -0.373 6.373 18 N -0.253 5.253 19 C -0.098 4.098 20 C 0.019 3.981 21 H 0.094 0.906 22 C -0.198 4.198 23 O -0.229 6.229 24 C 0.054 3.946 25 C -0.152 4.152 26 C -0.127 4.127 27 C -0.151 4.151 28 C -0.137 4.137 29 C -0.020 4.020 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.245 0.755 37 H 0.193 0.807 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.866 5.865 -8.939 20.821 hybrid contribution -0.026 0.074 0.477 0.483 sum -17.892 5.940 -8.462 20.665 Atomic orbital electron populations 1.21925 0.97423 0.99369 1.01677 1.22169 0.93696 0.99020 1.01964 1.19368 0.96238 0.89221 0.81570 0.92786 1.20954 0.88101 1.53466 0.95108 0.89976 1.24868 0.94908 0.93511 0.98839 1.69872 1.09556 1.47756 1.24704 0.86987 0.81412 0.79311 0.82718 1.19781 1.17950 1.20993 1.46461 1.13020 1.51701 1.18946 1.19628 0.84336 0.81002 0.86921 1.90308 1.49256 1.60765 1.40421 1.20742 0.80944 0.78969 0.89877 1.90544 1.50523 1.57968 1.38314 1.45477 1.18969 1.49979 1.10918 1.24123 0.87800 1.08298 0.89598 1.22799 0.95159 0.91391 0.88800 0.90647 1.21736 0.98446 1.03823 0.95845 1.86007 1.44450 1.57737 1.34667 1.18583 0.85911 1.00644 0.89505 1.20380 1.00702 1.03680 0.90454 1.20953 0.93260 1.00118 0.98337 1.21089 0.96208 1.00110 0.97703 1.22059 1.01751 0.98040 0.91875 1.18139 0.92943 1.02605 0.88294 0.93662 0.94617 0.92786 0.92494 0.91422 0.92038 0.75538 0.80742 0.89876 0.91076 0.89544 0.91199 0.84984 0.85464 0.85464 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.52 37.16 0.32 -2.28 16 2 C -0.13 -2.60 5.22 -26.73 -0.14 -2.74 16 3 C 0.24 5.20 1.79 -69.08 -0.12 5.08 16 4 H 0.05 1.25 5.32 -51.93 -0.28 0.98 16 5 C -0.54 -13.78 9.06 -34.44 -0.31 -14.10 16 6 H 0.08 2.25 8.02 -52.49 -0.42 1.83 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.88 -25.15 13.96 55.43 0.77 -24.37 16 9 Si 0.87 20.04 26.20 -169.99 -4.45 15.59 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.26 -5.59 6.18 56.52 0.35 -5.24 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.65 -12.60 5.02 -55.40 -0.28 -12.88 16 14 C 0.50 8.97 6.40 -11.64 -0.07 8.89 16 15 O -0.53 -9.52 10.19 5.49 0.06 -9.46 16 16 C 0.51 8.56 7.70 -11.64 -0.09 8.47 16 17 O -0.50 -8.80 13.21 5.46 0.07 -8.73 16 18 N -0.53 -8.08 3.01 -113.12 -0.34 -8.42 16 19 C 0.02 0.29 5.59 -3.54 -0.02 0.27 16 20 C 0.08 0.86 3.56 -26.65 -0.10 0.77 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 22 C -0.14 -1.19 9.59 37.16 0.36 -0.84 16 23 O -0.31 -4.07 9.97 -19.35 -0.19 -4.26 16 24 C 0.10 1.37 6.52 -39.02 -0.25 1.11 16 25 C -0.13 -1.51 9.97 -39.42 -0.39 -1.91 16 26 C -0.11 -1.11 10.03 -39.57 -0.40 -1.50 16 27 C -0.13 -1.52 10.04 -39.56 -0.40 -1.92 16 28 C -0.12 -1.68 9.00 -39.43 -0.36 -2.04 16 29 C 0.07 1.11 6.34 -83.44 -0.53 0.58 16 30 H 0.04 0.79 5.63 -51.93 -0.29 0.50 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.41 6.79 -51.93 -0.35 1.05 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.41 7.58 8.04 -40.82 -0.33 7.25 16 37 H 0.18 2.45 4.20 -55.56 -0.23 2.21 16 38 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.17 2.65 4.96 -53.36 -0.26 2.38 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -28.76 357.09 -7.58 -36.34 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.99 Total: 10.82 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.60 Total: -0.01 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.16 Total: -45.67 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.45 Total: 15.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.76 -7.58 -36.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.234 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds