Wall clock time and date at job start Tue Mar 31 2020 17:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47634 * 2 1 4 4 H 1.09003 * 109.47314 * 54.57880 * 3 2 1 5 5 C 1.50697 * 109.47530 * 174.57949 * 3 2 1 6 6 H 1.08000 * 119.99722 * 94.65764 * 5 3 2 7 7 C 1.37879 * 120.00297 * 274.65850 * 5 3 2 8 8 N 1.31510 * 119.99983 * 174.84274 * 7 5 3 9 9 Si 1.86799 * 119.99400 * 354.84245 * 7 5 3 10 10 H 1.48506 * 109.47293 * 275.09319 * 9 7 5 11 11 H 1.48497 * 109.47330 * 35.09714 * 9 7 5 12 12 H 1.48505 * 109.46738 * 155.09615 * 9 7 5 13 13 N 1.46504 * 109.47147 * 294.58001 * 3 2 1 14 14 C 1.34777 * 119.99862 * 84.99605 * 13 3 2 15 15 O 1.21358 * 120.00273 * 359.97438 * 14 13 3 16 16 C 1.49335 * 119.99897 * 180.02562 * 14 13 3 17 17 O 1.21386 * 120.00229 * 4.91934 * 16 14 13 18 18 N 1.34778 * 119.99794 * 184.91962 * 16 14 13 19 19 C 1.47293 * 121.14580 * 1.32326 * 18 16 14 20 20 C 1.53142 * 107.79741 * 221.87885 * 19 18 16 21 21 H 1.08995 * 109.40623 * 61.88651 * 20 19 18 22 22 C 1.53007 * 109.74941 * 182.15079 * 20 19 18 23 23 O 1.42961 * 108.91536 * 302.11810 * 20 19 18 24 24 C 1.35877 * 117.74415 * 49.30638 * 23 20 19 25 25 C 1.38706 * 119.66445 * 159.92440 * 24 23 20 26 26 C 1.38210 * 120.05326 * 179.69464 * 25 24 23 27 27 C 1.38300 * 120.30716 * 359.97084 * 26 25 24 28 28 C 1.38230 * 120.07643 * 0.07744 * 27 26 25 29 29 C 1.38653 * 119.86864 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46996 * 59.99949 * 1 2 3 31 31 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47075 * 300.00566 * 1 2 3 33 33 H 1.09003 * 109.47075 * 239.99433 * 2 1 3 34 34 H 1.09004 * 109.46996 * 120.00051 * 2 1 3 35 35 H 0.97007 * 119.99322 * 180.02562 * 8 7 5 36 36 H 0.96997 * 120.00253 * 265.00048 * 13 3 2 37 37 H 1.08991 * 109.83659 * 341.49818 * 19 18 16 38 38 H 1.09009 * 109.82723 * 102.45104 * 19 18 16 39 39 H 1.09002 * 109.47075 * 179.55959 * 22 20 19 40 40 H 1.08995 * 109.47049 * 299.56036 * 22 20 19 41 41 H 1.09004 * 109.47145 * 59.55984 * 22 20 19 42 42 H 1.08000 * 119.97498 * 359.66393 * 25 24 23 43 43 H 1.07994 * 119.84384 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.96308 * 180.08360 * 27 26 25 45 45 H 1.07991 * 120.06514 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5997 1.9836 0.8375 5 6 3.5411 1.4445 0.1342 6 1 4.1620 1.4918 -0.7482 7 6 4.1217 1.3860 1.3834 8 7 5.4280 1.2855 1.4974 9 14 3.0526 1.4496 2.9139 10 1 2.7734 2.8655 3.2643 11 1 1.7730 0.7425 2.6537 12 1 3.7617 0.7915 4.0406 13 7 1.6612 2.0944 -1.2561 14 6 0.4448 2.6611 -1.3810 15 8 -0.3369 2.6308 -0.4532 16 6 0.0584 3.3251 -2.6616 17 8 0.8032 3.2774 -3.6189 18 7 -1.1173 3.9775 -2.7543 19 6 -2.0272 4.0758 -1.6002 20 6 -3.4542 3.8515 -2.1086 21 1 -3.5341 2.8510 -2.5337 22 6 -4.4443 3.9974 -0.9513 23 8 -3.7461 4.8244 -3.1145 24 6 -2.8406 4.9926 -4.1136 25 6 -3.2343 5.5850 -5.3044 26 6 -2.3185 5.7658 -6.3235 27 6 -1.0065 5.3587 -6.1631 28 6 -0.6046 4.7664 -4.9806 29 6 -1.5193 4.5816 -3.9551 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8363 1.2440 2.3763 36 1 2.2858 2.1182 -1.9978 37 1 -1.7735 3.3139 -0.8633 38 1 -1.9493 5.0661 -1.1513 39 1 -5.4588 3.8446 -1.3196 40 1 -4.2201 3.2548 -0.1855 41 1 -4.3594 4.9967 -0.5243 42 1 -4.2575 5.9049 -5.4354 43 1 -2.6288 6.2270 -7.2494 44 1 -0.2951 5.5039 -6.9627 45 1 0.4198 4.4483 -4.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275762848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:02 Heat of formation + Delta-G solvation = -70.007448 kcal Electronic energy + Delta-G solvation = -29435.521678 eV Core-core repulsion = 25418.769582 eV Total energy + Delta-G solvation = -4016.752095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.83441 -41.24447 -39.87490 -38.64103 -37.57764 -36.50732 -34.45379 -33.64665 -33.23147 -31.58574 -30.25007 -29.62678 -27.88614 -26.28911 -24.79623 -24.05398 -23.79684 -22.10018 -21.50067 -21.22705 -19.66973 -19.23767 -18.67531 -18.37271 -17.56664 -17.45512 -17.16544 -16.89150 -16.31587 -16.09684 -15.95148 -15.47308 -15.17460 -14.89995 -14.84929 -14.78549 -14.37621 -14.19833 -13.95050 -13.79709 -13.71370 -13.44932 -13.14367 -12.90979 -12.86000 -12.71436 -12.66734 -12.45295 -12.33120 -12.00499 -11.84451 -11.71947 -11.62704 -11.30087 -11.23184 -10.86047 -10.20841 -10.02819 -9.56359 -8.96856 -8.39381 -6.47980 -0.18330 0.34352 0.56945 0.98915 1.33822 1.37286 1.46737 1.97355 2.05561 2.27609 2.31590 2.76937 2.95563 3.19559 3.36982 3.67946 3.81464 3.89826 4.10561 4.26965 4.28398 4.30224 4.35744 4.37573 4.44571 4.47337 4.57631 4.70005 4.75290 4.85101 4.94706 5.00584 5.10509 5.15743 5.19841 5.20522 5.26717 5.31697 5.36853 5.49531 5.53075 5.59452 5.73943 5.84043 5.96670 6.25545 6.36931 6.53266 6.63134 6.90110 7.19986 8.75655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.003468 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.022759 B = 8070.766242 C = 9047.703327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.246 3.754 4 H 0.046 0.954 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.235 1.235 12 H -0.281 1.281 13 N -0.662 5.662 14 C 0.506 3.494 15 O -0.526 6.526 16 C 0.508 3.492 17 O -0.515 6.515 18 N -0.526 5.526 19 C 0.021 3.979 20 C 0.076 3.924 21 H 0.073 0.927 22 C -0.135 4.135 23 O -0.317 6.317 24 C 0.088 3.912 25 C -0.132 4.132 26 C -0.093 4.093 27 C -0.133 4.133 28 C -0.139 4.139 29 C 0.044 3.956 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.271 0.729 36 H 0.410 0.590 37 H 0.169 0.831 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.150 0.850 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 6.605 -10.035 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.577 4.577 6 H 0.068 0.932 7 C -0.169 4.169 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.158 1.158 12 H -0.206 1.206 13 N -0.310 5.310 14 C 0.287 3.713 15 O -0.406 6.406 16 C 0.293 3.707 17 O -0.391 6.391 18 N -0.250 5.250 19 C -0.099 4.099 20 C 0.020 3.980 21 H 0.091 0.909 22 C -0.193 4.193 23 O -0.232 6.232 24 C 0.041 3.959 25 C -0.151 4.151 26 C -0.112 4.112 27 C -0.152 4.152 28 C -0.158 4.158 29 C -0.049 4.049 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.186 0.814 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.168 0.832 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.337 6.567 -9.634 24.315 hybrid contribution 0.998 -0.054 0.513 1.123 sum -20.339 6.513 -9.121 23.223 Atomic orbital electron populations 1.21815 0.95189 1.00963 1.01451 1.22084 0.95617 0.97305 1.01740 1.19119 0.93646 0.90575 0.82368 0.93589 1.21170 0.90103 1.52363 0.94017 0.93200 1.25645 0.95915 0.93350 1.01969 1.69998 1.11454 1.49958 1.25495 0.86074 0.80557 0.79414 0.78979 1.19742 1.15806 1.20649 1.46234 1.13932 1.52623 1.18239 1.19759 0.83646 0.80437 0.87452 1.90324 1.49154 1.60477 1.40673 1.20415 0.81676 0.79525 0.89099 1.90554 1.51231 1.58868 1.38491 1.45500 1.18456 1.49162 1.11860 1.24170 0.88685 1.08042 0.89036 1.22929 0.94623 0.91072 0.89383 0.90899 1.21766 0.98200 1.04435 0.94869 1.86009 1.44269 1.58116 1.34800 1.18891 0.85464 1.01079 0.90496 1.20806 1.02160 1.02491 0.89656 1.21401 0.92177 0.98291 0.99310 1.21397 0.97549 0.99114 0.97100 1.22027 1.01023 0.99511 0.93259 1.18377 0.93983 1.04280 0.88297 0.93735 0.92144 0.93084 0.92361 0.92092 0.91946 0.75412 0.81433 0.89655 0.89760 0.88398 0.90878 0.82511 0.81595 0.83248 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.52 71.98 0.61 -3.96 16 2 C -0.13 -5.05 5.22 30.59 0.16 -4.89 16 3 C 0.25 10.78 1.79 44.24 0.08 10.86 16 4 H 0.05 2.11 5.32 -2.39 -0.01 2.09 16 5 C -0.54 -28.40 9.06 25.60 0.23 -28.17 16 6 H 0.05 2.88 8.02 -2.91 -0.02 2.86 16 7 C 0.03 1.73 5.47 84.66 0.46 2.20 16 8 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 9 Si 0.93 41.37 26.20 68.60 1.80 43.16 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.24 -9.63 6.18 99.48 0.61 -9.02 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.66 -25.98 5.02 -447.55 -2.25 -28.23 16 14 C 0.51 18.19 6.40 87.23 0.56 18.74 16 15 O -0.53 -18.66 10.19 -3.27 -0.03 -18.69 16 16 C 0.51 17.37 7.70 87.23 0.67 18.04 16 17 O -0.51 -18.81 13.21 -3.36 -0.04 -18.85 16 18 N -0.53 -16.06 3.01 -630.14 -1.90 -17.95 16 19 C 0.02 0.53 5.59 86.28 0.48 1.01 16 20 C 0.08 1.63 3.56 30.64 0.11 1.74 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 C -0.14 -1.97 9.59 71.98 0.69 -1.28 16 23 O -0.32 -7.64 9.97 -92.17 -0.92 -8.56 16 24 C 0.09 2.24 6.52 22.63 0.15 2.39 16 25 C -0.13 -2.60 9.97 22.37 0.22 -2.38 16 26 C -0.09 -1.58 10.03 22.28 0.22 -1.36 16 27 C -0.13 -2.79 10.04 22.28 0.22 -2.57 16 28 C -0.14 -3.94 9.00 22.37 0.20 -3.73 16 29 C 0.04 1.29 6.34 38.14 0.24 1.53 16 30 H 0.04 1.48 5.63 -2.39 -0.01 1.47 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.46 6.79 -2.39 -0.02 2.45 16 35 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 36 H 0.41 15.86 8.04 -92.71 -0.75 15.11 16 37 H 0.17 4.56 4.20 -59.75 -0.25 4.31 16 38 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.15 4.84 4.96 -16.63 -0.08 4.76 16 Total: -1.00 -63.64 357.09 2.17 -61.47 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.11 Total: 33.87 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.32 Total: 8.18 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.84 Total: -100.58 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.00 Total: -46.10 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.80 Total: 43.16 kcal Total: -63.64 2.17 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.538 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds