Wall clock time and date at job start Tue Mar 31 2020 17:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 H 1.08998 * 109.47599 * 304.99793 * 3 2 1 5 5 C 1.50696 * 109.46840 * 184.99529 * 3 2 1 6 6 H 1.08000 * 120.00300 * 240.00283 * 5 3 2 7 7 C 1.37882 * 119.99845 * 60.00764 * 5 3 2 8 8 N 1.31518 * 119.99910 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47350 * 89.99597 * 9 7 5 11 11 H 1.48492 * 109.47056 * 209.99909 * 9 7 5 12 12 H 1.48507 * 109.46930 * 329.99504 * 9 7 5 13 13 N 1.46508 * 109.46800 * 65.00110 * 3 2 1 14 14 C 1.34774 * 119.99707 * 274.99402 * 13 3 2 15 15 O 1.21363 * 120.00490 * 0.02562 * 14 13 3 16 16 C 1.49338 * 119.99728 * 180.02562 * 14 13 3 17 17 O 1.21386 * 119.99886 * 6.28848 * 16 14 13 18 18 N 1.34776 * 120.00203 * 186.56431 * 16 14 13 19 19 C 1.47302 * 121.14424 * 6.72274 * 18 16 14 20 20 C 1.53541 * 107.58347 * 138.01386 * 19 18 16 21 21 H 1.08997 * 109.58324 * 298.41382 * 20 19 18 22 22 C 1.53001 * 109.58143 * 177.99398 * 20 19 18 23 23 O 1.42964 * 108.78615 * 58.20382 * 20 19 18 24 24 C 1.35881 * 117.74879 * 310.58901 * 23 20 19 25 25 C 1.38706 * 119.66263 * 200.11855 * 24 23 20 26 26 C 1.38204 * 120.05065 * 180.15255 * 25 24 23 27 27 C 1.38298 * 120.31326 * 359.97438 * 26 25 24 28 28 C 1.38221 * 120.07187 * 359.95045 * 27 26 25 29 29 C 1.38767 * 119.84591 * 359.75242 * 28 27 26 30 30 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47089 * 299.99687 * 1 2 3 32 32 H 1.09001 * 109.46826 * 59.99993 * 1 2 3 33 33 H 1.08993 * 109.47089 * 240.00313 * 2 1 3 34 34 H 1.09001 * 109.46826 * 120.00007 * 2 1 3 35 35 H 0.96993 * 120.00071 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99757 * 95.00181 * 13 3 2 37 37 H 1.08994 * 109.83693 * 257.53597 * 19 18 16 38 38 H 1.09001 * 109.83319 * 18.49865 * 19 18 16 39 39 H 1.08995 * 109.47446 * 60.00528 * 22 20 19 40 40 H 1.09002 * 109.46428 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.46828 * 299.99848 * 22 20 19 42 42 H 1.07993 * 119.97395 * 0.13322 * 25 24 23 43 43 H 1.08007 * 119.83889 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.96323 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.06327 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3368 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7602 11 1 6.3830 0.9225 -2.8171 12 1 6.5570 2.0739 -0.6901 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3402 2.6319 0.4338 16 6 0.0402 3.3324 2.6429 17 8 0.8526 3.4658 3.5348 18 7 -1.2198 3.7821 2.8062 19 6 -2.2648 3.5002 1.8071 20 6 -3.5483 3.1378 2.5680 21 1 -3.3778 2.2428 3.1664 22 6 -4.6810 2.8838 1.5713 23 8 -3.8989 4.2273 3.4246 24 6 -2.9278 4.7416 4.2239 25 6 -3.2802 5.4825 5.3423 26 6 -2.2991 6.0119 6.1591 27 6 -0.9627 5.8067 5.8679 28 6 -0.6014 5.0685 4.7566 29 6 -1.5827 4.5295 3.9367 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0616 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 -2.4365 4.3835 1.1920 38 1 -1.9592 2.6641 1.1781 39 1 -4.4065 2.0610 0.9113 40 1 -5.5911 2.6272 2.1134 41 1 -4.8523 3.7829 0.9793 42 1 -4.3221 5.6460 5.5749 43 1 -2.5773 6.5886 7.0289 44 1 -0.2007 6.2233 6.5099 45 1 0.4422 4.9086 4.5292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275762853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:07 Heat of formation + Delta-G solvation = -59.316505 kcal Electronic energy + Delta-G solvation = -29341.345093 eV Core-core repulsion = 25325.056592 eV Total energy + Delta-G solvation = -4016.288501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61698 -39.85932 -38.42179 -37.63380 -35.99544 -35.03679 -32.75189 -32.51522 -31.11439 -30.58362 -29.23119 -27.41311 -26.77836 -24.91128 -23.44870 -22.92501 -22.58445 -20.75791 -19.96258 -19.61798 -18.46370 -17.78329 -17.45146 -16.47157 -16.25019 -15.92830 -15.83986 -15.30705 -15.19244 -14.63106 -14.37327 -14.17103 -14.01901 -13.82196 -13.52327 -13.21178 -13.04924 -12.82216 -12.63237 -12.40910 -12.16111 -11.89115 -11.78892 -11.67872 -11.40984 -11.27812 -11.13272 -10.99668 -10.93478 -10.68392 -10.43168 -10.30818 -10.18824 -9.78860 -9.21999 -8.91434 -8.63441 -8.54576 -8.16297 -7.90169 -6.23824 -4.33718 1.01089 1.30724 1.84661 2.30912 3.03159 3.19808 3.27107 3.29751 3.43964 3.69908 3.77033 4.25806 4.31880 4.62386 4.72747 4.77928 4.89133 4.99308 5.08593 5.15277 5.24047 5.32979 5.39365 5.45268 5.51097 5.73849 5.85366 5.89157 5.99601 6.16826 6.21284 6.25402 6.34741 6.44646 6.46372 6.73396 6.84116 6.91776 6.98364 7.05386 7.16794 7.25778 7.36530 7.55178 7.67466 7.76949 7.99905 8.32318 8.51011 8.76521 9.33405 10.81533 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003239 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.666123 B = 8643.518053 C = 9903.799794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.662 5.662 14 C 0.497 3.503 15 O -0.524 6.524 16 C 0.508 3.492 17 O -0.501 6.501 18 N -0.533 5.533 19 C 0.053 3.947 20 C 0.072 3.928 21 H 0.076 0.924 22 C -0.141 4.141 23 O -0.313 6.313 24 C 0.100 3.900 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.131 4.131 28 C -0.113 4.113 29 C 0.078 3.922 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.403 0.597 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 6.427 11.278 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.310 5.310 14 C 0.276 3.724 15 O -0.404 6.404 16 C 0.294 3.706 17 O -0.376 6.376 18 N -0.258 5.258 19 C -0.068 4.068 20 C 0.015 3.985 21 H 0.094 0.906 22 C -0.199 4.199 23 O -0.227 6.227 24 C 0.053 3.947 25 C -0.151 4.151 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.133 4.133 29 C -0.016 4.016 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.106 0.894 38 H 0.169 0.831 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.852 6.346 10.769 18.658 hybrid contribution 1.380 -0.064 0.220 1.399 sum -12.472 6.283 10.988 17.770 Atomic orbital electron populations 1.21865 0.98387 0.98521 1.00857 1.21971 0.92615 0.99331 1.02896 1.19059 0.94922 0.89385 0.79938 0.92595 1.21197 0.90236 1.39597 1.06655 0.91736 1.24867 0.98897 0.94533 0.95178 1.69871 1.35324 1.37302 1.09360 0.86399 0.84430 0.78624 0.77432 1.20422 1.20996 1.19729 1.46509 1.13234 1.51919 1.19366 1.19506 0.84576 0.81261 0.87015 1.90575 1.50149 1.60039 1.39672 1.20971 0.81371 0.79181 0.89108 1.90591 1.50418 1.54490 1.42093 1.45514 1.10137 1.49805 1.20361 1.23599 0.85730 1.06762 0.90756 1.22947 0.95694 0.88222 0.91651 0.90581 1.21741 0.96934 1.03347 0.97872 1.86010 1.35603 1.48757 1.52358 1.18540 0.85165 0.98574 0.92456 1.20377 1.00454 1.01391 0.92833 1.20937 0.92514 0.99954 0.99339 1.21051 0.96176 0.99995 0.97785 1.21797 1.01134 0.96036 0.94296 1.18089 0.92914 0.99497 0.91125 0.95354 0.94838 0.92815 0.87717 0.94625 0.92384 0.76293 0.89358 0.83075 0.89537 0.91054 0.91076 0.84953 0.85445 0.85485 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 37.16 0.32 -2.45 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.33 2.24 -69.08 -0.15 6.17 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.51 11.29 55.43 0.63 -22.88 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.66 -13.47 5.01 -55.40 -0.28 -13.75 16 14 C 0.50 9.45 6.30 -11.64 -0.07 9.38 16 15 O -0.52 -10.32 10.42 5.49 0.06 -10.26 16 16 C 0.51 8.88 7.64 -11.64 -0.09 8.79 16 17 O -0.50 -9.14 13.38 5.47 0.07 -9.07 16 18 N -0.53 -8.38 3.01 -112.88 -0.34 -8.72 16 19 C 0.05 0.72 5.19 -3.32 -0.02 0.70 16 20 C 0.07 0.83 3.58 -26.45 -0.09 0.74 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.14 -1.23 9.58 37.16 0.36 -0.87 16 23 O -0.31 -4.08 9.97 -19.37 -0.19 -4.28 16 24 C 0.10 1.37 6.51 -39.06 -0.25 1.11 16 25 C -0.13 -1.50 9.97 -39.42 -0.39 -1.89 16 26 C -0.11 -1.12 10.03 -39.57 -0.40 -1.52 16 27 C -0.13 -1.52 10.04 -39.57 -0.40 -1.92 16 28 C -0.11 -1.64 8.93 -39.39 -0.35 -1.99 16 29 C 0.08 1.18 6.32 -83.44 -0.53 0.65 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.63 5.64 -51.93 -0.29 0.34 16 32 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.40 7.74 8.02 -40.82 -0.33 7.41 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.15 2.20 4.99 -52.11 -0.26 1.94 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.16 2.56 5.19 -52.53 -0.27 2.29 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -27.90 360.71 -8.29 -36.19 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.03 Total: 10.74 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.62 Total: 1.53 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.01 Total: -45.34 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.90 -8.29 -36.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.124 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds