Wall clock time and date at job start Tue Mar 31 2020 17:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 H 1.08998 * 109.47599 * 304.99793 * 3 2 1 5 5 C 1.50696 * 109.46840 * 184.99529 * 3 2 1 6 6 H 1.08000 * 120.00300 * 240.00283 * 5 3 2 7 7 C 1.37882 * 119.99845 * 60.00764 * 5 3 2 8 8 N 1.31518 * 119.99910 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47350 * 89.99597 * 9 7 5 11 11 H 1.48492 * 109.47056 * 209.99909 * 9 7 5 12 12 H 1.48507 * 109.46930 * 329.99504 * 9 7 5 13 13 N 1.46508 * 109.46800 * 65.00110 * 3 2 1 14 14 C 1.34774 * 119.99707 * 274.99402 * 13 3 2 15 15 O 1.21363 * 120.00490 * 0.02562 * 14 13 3 16 16 C 1.49338 * 119.99728 * 180.02562 * 14 13 3 17 17 O 1.21386 * 119.99886 * 6.28848 * 16 14 13 18 18 N 1.34776 * 120.00203 * 186.56431 * 16 14 13 19 19 C 1.47302 * 121.14424 * 6.72274 * 18 16 14 20 20 C 1.53541 * 107.58347 * 138.01386 * 19 18 16 21 21 H 1.08997 * 109.58324 * 298.41382 * 20 19 18 22 22 C 1.53001 * 109.58143 * 177.99398 * 20 19 18 23 23 O 1.42964 * 108.78615 * 58.20382 * 20 19 18 24 24 C 1.35881 * 117.74879 * 310.58901 * 23 20 19 25 25 C 1.38706 * 119.66263 * 200.11855 * 24 23 20 26 26 C 1.38204 * 120.05065 * 180.15255 * 25 24 23 27 27 C 1.38298 * 120.31326 * 359.97438 * 26 25 24 28 28 C 1.38221 * 120.07187 * 359.95045 * 27 26 25 29 29 C 1.38767 * 119.84591 * 359.75242 * 28 27 26 30 30 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47089 * 299.99687 * 1 2 3 32 32 H 1.09001 * 109.46826 * 59.99993 * 1 2 3 33 33 H 1.08993 * 109.47089 * 240.00313 * 2 1 3 34 34 H 1.09001 * 109.46826 * 120.00007 * 2 1 3 35 35 H 0.96993 * 120.00071 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99757 * 95.00181 * 13 3 2 37 37 H 1.08994 * 109.83693 * 257.53597 * 19 18 16 38 38 H 1.09001 * 109.83319 * 18.49865 * 19 18 16 39 39 H 1.08995 * 109.47446 * 60.00528 * 22 20 19 40 40 H 1.09002 * 109.46428 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.46828 * 299.99848 * 22 20 19 42 42 H 1.07993 * 119.97395 * 0.13322 * 25 24 23 43 43 H 1.08007 * 119.83889 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.96323 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.06327 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3368 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7602 11 1 6.3830 0.9225 -2.8171 12 1 6.5570 2.0739 -0.6901 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3402 2.6319 0.4338 16 6 0.0402 3.3324 2.6429 17 8 0.8526 3.4658 3.5348 18 7 -1.2198 3.7821 2.8062 19 6 -2.2648 3.5002 1.8071 20 6 -3.5483 3.1378 2.5680 21 1 -3.3778 2.2428 3.1664 22 6 -4.6810 2.8838 1.5713 23 8 -3.8989 4.2273 3.4246 24 6 -2.9278 4.7416 4.2239 25 6 -3.2802 5.4825 5.3423 26 6 -2.2991 6.0119 6.1591 27 6 -0.9627 5.8067 5.8679 28 6 -0.6014 5.0685 4.7566 29 6 -1.5827 4.5295 3.9367 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0616 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 -2.4365 4.3835 1.1920 38 1 -1.9592 2.6641 1.1781 39 1 -4.4065 2.0610 0.9113 40 1 -5.5911 2.6272 2.1134 41 1 -4.8523 3.7829 0.9793 42 1 -4.3221 5.6460 5.5749 43 1 -2.5773 6.5886 7.0289 44 1 -0.2007 6.2233 6.5099 45 1 0.4422 4.9086 4.5292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275762853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:06 Heat of formation + Delta-G solvation = -75.664220 kcal Electronic energy + Delta-G solvation = -29342.053984 eV Core-core repulsion = 25325.056592 eV Total energy + Delta-G solvation = -4016.997391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.80105 -41.18226 -39.80096 -38.63653 -37.47358 -36.51732 -34.36620 -33.64796 -32.85937 -31.58097 -30.24279 -29.19428 -27.86873 -26.29604 -24.98743 -24.03865 -23.78340 -22.05757 -21.38635 -21.15815 -19.61115 -19.15779 -18.62402 -18.00268 -17.59471 -17.33394 -17.15995 -16.85637 -16.25318 -16.12885 -15.86018 -15.35265 -15.14932 -14.92051 -14.82450 -14.62821 -14.35082 -14.12668 -13.83885 -13.51702 -13.43167 -13.21425 -13.11783 -12.97250 -12.83039 -12.72494 -12.69327 -12.35318 -12.24187 -12.09372 -12.03478 -11.76742 -11.60906 -11.29398 -11.12630 -10.59810 -10.29049 -9.90076 -9.54619 -8.96651 -8.20705 -6.37450 -0.16598 0.34341 0.60434 1.02254 1.43851 1.45283 1.55030 1.99936 2.06502 2.30722 2.44271 2.77597 3.09255 3.26672 3.35617 3.66411 3.80109 3.87658 4.09592 4.26215 4.28493 4.35607 4.46454 4.47987 4.53267 4.56444 4.67518 4.72892 4.85240 4.94652 4.99273 5.01315 5.18685 5.21564 5.24892 5.32977 5.36863 5.38208 5.52493 5.54973 5.65333 5.73675 5.79765 5.83309 6.09685 6.22478 6.37131 6.62742 6.69648 7.02243 7.34024 8.84265 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003239 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.666123 B = 8643.518053 C = 9903.799794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.018 0.982 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.667 5.667 14 C 0.499 3.501 15 O -0.532 6.532 16 C 0.509 3.491 17 O -0.515 6.515 18 N -0.529 5.529 19 C 0.051 3.949 20 C 0.075 3.925 21 H 0.075 0.925 22 C -0.136 4.136 23 O -0.315 6.315 24 C 0.087 3.913 25 C -0.130 4.130 26 C -0.093 4.093 27 C -0.131 4.131 28 C -0.133 4.133 29 C 0.046 3.954 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.151 0.849 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 7.261 13.243 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.315 5.315 14 C 0.279 3.721 15 O -0.412 6.412 16 C 0.294 3.706 17 O -0.391 6.391 18 N -0.254 5.254 19 C -0.070 4.070 20 C 0.018 3.982 21 H 0.093 0.907 22 C -0.193 4.193 23 O -0.230 6.230 24 C 0.040 3.960 25 C -0.149 4.149 26 C -0.111 4.111 27 C -0.149 4.149 28 C -0.153 4.153 29 C -0.048 4.048 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.169 0.831 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.202 7.200 12.755 21.110 hybrid contribution 1.690 -0.225 -0.319 1.734 sum -13.512 6.975 12.436 19.644 Atomic orbital electron populations 1.21712 0.96312 0.99838 1.00464 1.21820 0.94426 0.98310 1.01691 1.18676 0.94056 0.89665 0.80061 0.96390 1.21513 0.91300 1.39652 1.06927 0.91566 1.25643 1.03051 0.94166 0.94867 1.69994 1.36937 1.37833 1.09757 0.85421 0.79373 0.78751 0.77280 1.19718 1.20868 1.19402 1.46276 1.14073 1.52643 1.18539 1.19782 0.83906 0.80706 0.87686 1.90579 1.50285 1.60032 1.40305 1.20489 0.82228 0.79672 0.88209 1.90593 1.51029 1.55357 1.42137 1.45512 1.09607 1.49210 1.21051 1.23641 0.86316 1.06240 0.90771 1.23051 0.95568 0.87765 0.91797 0.90717 1.21770 0.96313 1.03866 0.97385 1.86011 1.35441 1.49079 1.52442 1.18862 0.84589 0.99190 0.93351 1.20812 1.02152 1.00125 0.91791 1.21403 0.91448 0.98530 0.99747 1.21372 0.97765 0.98965 0.96827 1.21780 1.00193 0.97580 0.95766 1.18346 0.93996 1.00942 0.91475 0.93125 0.94213 0.94119 0.90200 0.94337 0.92324 0.75703 0.89380 0.84161 0.88609 0.89540 0.90780 0.82399 0.81453 0.83127 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.51 71.99 0.61 -4.43 16 2 C -0.12 -5.72 5.45 30.60 0.17 -5.55 16 3 C 0.28 13.58 2.24 44.24 0.10 13.68 16 4 H 0.02 1.02 7.58 -2.39 -0.02 1.00 16 5 C -0.56 -28.91 8.73 25.60 0.22 -28.68 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.25 5.29 84.66 0.45 1.69 16 8 N -0.91 -49.51 11.29 21.45 0.24 -49.27 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.67 -28.03 5.01 -447.54 -2.24 -30.27 16 14 C 0.50 19.60 6.30 87.23 0.55 20.15 16 15 O -0.53 -21.63 10.42 -3.29 -0.03 -21.66 16 16 C 0.51 18.33 7.64 87.23 0.67 19.00 16 17 O -0.51 -19.40 13.38 -3.36 -0.04 -19.44 16 18 N -0.53 -16.91 3.01 -629.40 -1.89 -18.80 16 19 C 0.05 1.40 5.19 86.41 0.45 1.85 16 20 C 0.07 1.67 3.58 30.78 0.11 1.78 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 C -0.14 -2.14 9.58 71.98 0.69 -1.45 16 23 O -0.32 -7.75 9.97 -92.21 -0.92 -8.67 16 24 C 0.09 2.26 6.51 22.61 0.15 2.40 16 25 C -0.13 -2.56 9.97 22.37 0.22 -2.33 16 26 C -0.09 -1.56 10.03 22.28 0.22 -1.34 16 27 C -0.13 -2.73 10.04 22.28 0.22 -2.51 16 28 C -0.13 -3.83 8.93 22.39 0.20 -3.63 16 29 C 0.05 1.37 6.32 38.14 0.24 1.61 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.51 5.64 -2.39 -0.01 1.50 16 32 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 33 H 0.08 4.13 5.95 -2.39 -0.01 4.12 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.41 16.19 8.02 -92.71 -0.74 15.45 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.14 4.17 4.99 -5.30 -0.03 4.14 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.14 4.62 5.19 -3.54 -0.02 4.60 16 Total: -1.00 -61.60 360.71 2.67 -58.93 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.27 Total: 33.46 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.27 Total: 12.25 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -3.89 Total: -98.34 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -1.00 Total: -49.77 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.60 2.67 -58.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.736 kcal (2) G-P(sol) polarization free energy of solvation -61.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds