Wall clock time and date at job start Tue Mar 31 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.09000 * 109.47242 * 54.99966 * 3 2 1 5 5 C 1.50700 * 109.47305 * 174.99862 * 3 2 1 6 6 H 1.08001 * 119.99889 * 119.99633 * 5 3 2 7 7 C 1.37873 * 119.99879 * 300.00046 * 5 3 2 8 8 N 1.31510 * 120.00385 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00075 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47313 * 89.99852 * 9 7 5 11 11 H 1.48498 * 109.47414 * 209.99807 * 9 7 5 12 12 H 1.48506 * 109.46976 * 330.00135 * 9 7 5 13 13 N 1.46497 * 109.47038 * 294.99766 * 3 2 1 14 14 C 1.34776 * 120.00298 * 84.99814 * 13 3 2 15 15 O 1.21365 * 119.99595 * 0.02562 * 14 13 3 16 16 C 1.49330 * 120.00701 * 179.97438 * 14 13 3 17 17 O 1.21396 * 119.99792 * 6.18371 * 16 14 13 18 18 N 1.34779 * 120.00695 * 186.18110 * 16 14 13 19 19 C 1.47293 * 121.14198 * 359.21708 * 18 16 14 20 20 C 1.53536 * 107.59011 * 137.97797 * 19 18 16 21 21 H 1.08992 * 109.58208 * 298.34267 * 20 19 18 22 22 C 1.53002 * 109.57975 * 177.93565 * 20 19 18 23 23 O 1.42963 * 108.80785 * 58.14032 * 20 19 18 24 24 C 1.35878 * 117.75546 * 310.59885 * 23 20 19 25 25 C 1.38701 * 119.67145 * 200.18529 * 24 23 20 26 26 C 1.38204 * 120.05474 * 180.19774 * 25 24 23 27 27 C 1.38304 * 120.31229 * 0.06250 * 26 25 24 28 28 C 1.38231 * 120.06963 * 359.93889 * 27 26 25 29 29 C 1.38650 * 119.87078 * 0.21587 * 28 27 26 30 30 H 1.09001 * 109.47335 * 60.00409 * 1 2 3 31 31 H 1.09003 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47104 * 300.00141 * 1 2 3 33 33 H 1.09000 * 109.47104 * 239.99859 * 2 1 3 34 34 H 1.09001 * 109.47335 * 119.99591 * 2 1 3 35 35 H 0.96993 * 120.00620 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00484 * 265.00477 * 13 3 2 37 37 H 1.08995 * 109.83732 * 18.45491 * 19 18 16 38 38 H 1.09003 * 109.88930 * 257.52651 * 19 18 16 39 39 H 1.08994 * 109.47396 * 300.67825 * 22 20 19 40 40 H 1.09000 * 109.47093 * 60.68177 * 22 20 19 41 41 H 1.09001 * 109.47013 * 180.68054 * 22 20 19 42 42 H 1.08001 * 119.97260 * 0.22306 * 25 24 23 43 43 H 1.08001 * 119.84707 * 180.08169 * 26 25 24 44 44 H 1.07996 * 119.96749 * 179.91172 * 27 26 25 45 45 H 1.07996 * 120.06018 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0838 11 1 6.4390 -0.3109 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3398 2.6326 -0.4336 16 6 0.0403 3.3324 -2.6429 17 8 0.7683 3.2684 -3.6122 18 7 -1.1244 4.0065 -2.7183 19 6 -2.0348 4.0858 -1.5632 20 6 -2.5609 5.5261 -1.4851 21 1 -1.7280 6.2112 -1.3275 22 6 -3.5541 5.6472 -0.3276 23 8 -3.2170 5.8445 -2.7147 24 6 -2.5574 5.5760 -3.8719 25 6 -2.9307 6.2224 -5.0409 26 6 -2.2679 5.9523 -6.2232 27 6 -1.2314 5.0370 -6.2490 28 6 -0.8519 4.3876 -5.0893 29 6 -1.5154 4.6521 -3.9009 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8292 -0.0611 2.9498 36 1 2.2719 2.1231 -1.9978 37 1 -1.4949 3.8392 -0.6490 38 1 -2.8670 3.3950 -1.6988 39 1 -4.3823 4.9565 -0.4857 40 1 -3.0521 5.4042 0.6089 41 1 -3.9355 6.6672 -0.2813 42 1 -3.7398 6.9377 -5.0271 43 1 -2.5605 6.4586 -7.1312 44 1 -0.7183 4.8292 -7.1762 45 1 -0.0428 3.6726 -5.1097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275762858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:12 Heat of formation + Delta-G solvation = -54.506278 kcal Electronic energy + Delta-G solvation = -29307.162561 eV Core-core repulsion = 25291.082646 eV Total energy + Delta-G solvation = -4016.079914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61436 -39.86686 -38.44746 -37.61330 -36.02324 -35.03103 -32.72254 -32.53799 -31.11580 -30.56576 -29.21235 -27.43308 -26.74318 -24.90303 -23.46473 -22.90531 -22.58447 -20.73697 -19.96874 -19.67239 -18.43114 -17.76818 -17.47496 -16.44576 -16.28240 -16.00394 -15.72624 -15.40090 -15.16370 -14.62313 -14.35942 -14.19647 -14.02076 -13.79710 -13.49493 -13.24506 -13.07801 -12.82162 -12.63456 -12.27938 -12.19329 -11.93487 -11.78341 -11.70722 -11.40104 -11.31448 -11.06684 -10.97748 -10.93954 -10.59103 -10.41537 -10.31990 -10.15440 -9.76116 -9.23411 -8.83491 -8.64808 -8.54810 -8.17387 -7.89054 -6.24630 -4.34781 1.02021 1.32305 1.84121 2.31317 3.05449 3.19254 3.26542 3.28991 3.44347 3.67318 3.79020 4.25125 4.34506 4.63628 4.75540 4.81243 4.87440 4.99972 5.07802 5.16925 5.25796 5.36621 5.41600 5.47574 5.54285 5.76596 5.90299 5.91393 6.00990 6.18906 6.23813 6.28512 6.36242 6.47152 6.48043 6.77199 6.85802 6.93775 6.99877 7.06267 7.17940 7.28189 7.36761 7.54341 7.67661 7.76705 7.99546 8.30286 8.49540 8.75216 9.32449 10.80658 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.003180 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.554037 B = 8802.839887 C = 9596.022802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.057 0.943 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.660 5.660 14 C 0.499 3.501 15 O -0.523 6.523 16 C 0.509 3.491 17 O -0.502 6.502 18 N -0.530 5.530 19 C 0.034 3.966 20 C 0.073 3.927 21 H 0.077 0.923 22 C -0.141 4.141 23 O -0.314 6.314 24 C 0.101 3.899 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.075 3.925 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.105 0.895 35 H 0.266 0.734 36 H 0.403 0.597 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 9.250 -9.842 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.308 5.308 14 C 0.279 3.721 15 O -0.404 6.404 16 C 0.294 3.706 17 O -0.378 6.378 18 N -0.254 5.254 19 C -0.086 4.086 20 C 0.016 3.984 21 H 0.094 0.906 22 C -0.199 4.199 23 O -0.228 6.228 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.127 4.127 27 C -0.152 4.152 28 C -0.137 4.137 29 C -0.019 4.019 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.185 0.815 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.437 9.082 -9.371 18.027 hybrid contribution 1.290 -0.087 -0.280 1.323 sum -11.147 8.995 -9.651 17.272 Atomic orbital electron populations 1.21858 0.98258 0.98554 1.00967 1.21970 0.92671 0.99277 1.02898 1.19072 0.94926 0.89463 0.79855 0.92572 1.21189 0.90209 1.39667 1.06673 0.91740 1.24860 0.98894 0.94478 0.95210 1.69867 1.35354 1.37275 1.09316 0.86403 0.84409 0.77725 0.78360 1.20466 1.20975 1.19698 1.46516 1.13068 1.51854 1.19360 1.19511 0.84436 0.81342 0.86849 1.90428 1.50415 1.59471 1.40052 1.20910 0.80207 0.79327 0.90144 1.90535 1.51135 1.58729 1.37362 1.45504 1.19348 1.48867 1.11731 1.23992 0.95305 0.96754 0.92584 1.22928 0.96219 0.95890 0.83348 0.90553 1.21737 0.99002 1.03472 0.95652 1.86004 1.43798 1.80896 1.12143 1.18586 0.94135 0.94716 0.87221 1.20375 1.02805 1.01662 0.90349 1.20944 0.96083 0.98576 0.97132 1.21077 0.98059 0.97936 0.98081 1.22028 1.00977 1.00899 0.89831 1.18149 0.99335 0.97189 0.87200 0.94695 0.95393 0.92861 0.94598 0.87731 0.92366 0.76217 0.81519 0.89671 0.91183 0.89482 0.91098 0.84991 0.85496 0.85526 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.28 2.24 -69.08 -0.15 6.13 16 4 H 0.06 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.38 11.29 55.43 0.63 -22.75 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.66 -13.32 5.01 -55.41 -0.28 -13.60 16 14 C 0.50 9.40 6.36 -11.64 -0.07 9.33 16 15 O -0.52 -10.14 10.23 5.48 0.06 -10.08 16 16 C 0.51 8.85 7.70 -11.64 -0.09 8.76 16 17 O -0.50 -9.09 13.23 5.46 0.07 -9.02 16 18 N -0.53 -8.35 3.00 -112.89 -0.34 -8.69 16 19 C 0.03 0.47 5.45 -3.33 -0.02 0.45 16 20 C 0.07 0.87 3.59 -26.45 -0.09 0.78 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 22 C -0.14 -1.26 9.58 37.16 0.36 -0.91 16 23 O -0.31 -4.17 9.97 -19.36 -0.19 -4.37 16 24 C 0.10 1.40 6.52 -39.02 -0.25 1.14 16 25 C -0.13 -1.54 9.97 -39.42 -0.39 -1.93 16 26 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.55 10.05 -39.56 -0.40 -1.95 16 28 C -0.12 -1.71 8.99 -39.43 -0.35 -2.07 16 29 C 0.08 1.15 6.34 -83.44 -0.53 0.62 16 30 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.40 7.69 8.02 -40.82 -0.33 7.36 16 37 H 0.17 2.48 4.48 -54.45 -0.24 2.23 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.17 2.66 4.98 -53.25 -0.27 2.40 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -27.56 360.10 -8.28 -35.84 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.01 Total: 11.34 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.62 Total: 0.98 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.01 Total: -45.04 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.56 -8.28 -35.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.662 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds