Wall clock time and date at job start Tue Mar 31 2020 17:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.09000 * 109.47242 * 54.99966 * 3 2 1 5 5 C 1.50700 * 109.47305 * 174.99862 * 3 2 1 6 6 H 1.08001 * 119.99889 * 119.99633 * 5 3 2 7 7 C 1.37873 * 119.99879 * 300.00046 * 5 3 2 8 8 N 1.31510 * 120.00385 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00075 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47313 * 89.99852 * 9 7 5 11 11 H 1.48498 * 109.47414 * 209.99807 * 9 7 5 12 12 H 1.48506 * 109.46976 * 330.00135 * 9 7 5 13 13 N 1.46497 * 109.47038 * 294.99766 * 3 2 1 14 14 C 1.34776 * 120.00298 * 84.99814 * 13 3 2 15 15 O 1.21365 * 119.99595 * 0.02562 * 14 13 3 16 16 C 1.49330 * 120.00701 * 179.97438 * 14 13 3 17 17 O 1.21396 * 119.99792 * 6.18371 * 16 14 13 18 18 N 1.34779 * 120.00695 * 186.18110 * 16 14 13 19 19 C 1.47293 * 121.14198 * 359.21708 * 18 16 14 20 20 C 1.53536 * 107.59011 * 137.97797 * 19 18 16 21 21 H 1.08992 * 109.58208 * 298.34267 * 20 19 18 22 22 C 1.53002 * 109.57975 * 177.93565 * 20 19 18 23 23 O 1.42963 * 108.80785 * 58.14032 * 20 19 18 24 24 C 1.35878 * 117.75546 * 310.59885 * 23 20 19 25 25 C 1.38701 * 119.67145 * 200.18529 * 24 23 20 26 26 C 1.38204 * 120.05474 * 180.19774 * 25 24 23 27 27 C 1.38304 * 120.31229 * 0.06250 * 26 25 24 28 28 C 1.38231 * 120.06963 * 359.93889 * 27 26 25 29 29 C 1.38650 * 119.87078 * 0.21587 * 28 27 26 30 30 H 1.09001 * 109.47335 * 60.00409 * 1 2 3 31 31 H 1.09003 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47104 * 300.00141 * 1 2 3 33 33 H 1.09000 * 109.47104 * 239.99859 * 2 1 3 34 34 H 1.09001 * 109.47335 * 119.99591 * 2 1 3 35 35 H 0.96993 * 120.00620 * 180.02562 * 8 7 5 36 36 H 0.96999 * 120.00484 * 265.00477 * 13 3 2 37 37 H 1.08995 * 109.83732 * 18.45491 * 19 18 16 38 38 H 1.09003 * 109.88930 * 257.52651 * 19 18 16 39 39 H 1.08994 * 109.47396 * 300.67825 * 22 20 19 40 40 H 1.09000 * 109.47093 * 60.68177 * 22 20 19 41 41 H 1.09001 * 109.47013 * 180.68054 * 22 20 19 42 42 H 1.08001 * 119.97260 * 0.22306 * 25 24 23 43 43 H 1.08001 * 119.84707 * 180.08169 * 26 25 24 44 44 H 1.07996 * 119.96749 * 179.91172 * 27 26 25 45 45 H 1.07996 * 120.06018 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0838 11 1 6.4390 -0.3109 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3398 2.6326 -0.4336 16 6 0.0403 3.3324 -2.6429 17 8 0.7683 3.2684 -3.6122 18 7 -1.1244 4.0065 -2.7183 19 6 -2.0348 4.0858 -1.5632 20 6 -2.5609 5.5261 -1.4851 21 1 -1.7280 6.2112 -1.3275 22 6 -3.5541 5.6472 -0.3276 23 8 -3.2170 5.8445 -2.7147 24 6 -2.5574 5.5760 -3.8719 25 6 -2.9307 6.2224 -5.0409 26 6 -2.2679 5.9523 -6.2232 27 6 -1.2314 5.0370 -6.2490 28 6 -0.8519 4.3876 -5.0893 29 6 -1.5154 4.6521 -3.9009 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8292 -0.0611 2.9498 36 1 2.2719 2.1231 -1.9978 37 1 -1.4949 3.8392 -0.6490 38 1 -2.8670 3.3950 -1.6988 39 1 -4.3823 4.9565 -0.4857 40 1 -3.0521 5.4042 0.6089 41 1 -3.9355 6.6672 -0.2813 42 1 -3.7398 6.9377 -5.0271 43 1 -2.5605 6.4586 -7.1312 44 1 -0.7183 4.8292 -7.1762 45 1 -0.0428 3.6726 -5.1097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275762858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:11 Heat of formation + Delta-G solvation = -70.628985 kcal Electronic energy + Delta-G solvation = -29307.861694 eV Core-core repulsion = 25291.082646 eV Total energy + Delta-G solvation = -4016.779047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.80714 -41.18553 -39.81681 -38.62765 -37.50500 -36.50046 -34.37081 -33.63967 -32.87106 -31.57665 -30.23456 -29.20554 -27.85529 -26.28150 -25.00730 -24.04222 -23.78445 -22.06091 -21.38776 -21.20370 -19.59119 -19.13888 -18.64846 -17.99838 -17.71625 -17.15017 -17.11719 -16.98774 -16.29117 -16.10519 -15.82618 -15.45088 -15.13759 -14.87085 -14.83505 -14.62498 -14.40486 -14.07153 -13.87770 -13.54070 -13.45706 -13.21999 -13.15066 -12.93274 -12.83685 -12.71592 -12.70361 -12.33458 -12.21867 -12.11056 -12.00166 -11.72712 -11.59687 -11.26947 -11.11954 -10.58288 -10.23646 -9.87378 -9.55805 -8.96580 -8.20191 -6.37012 -0.16051 0.34815 0.60180 1.02271 1.44320 1.46031 1.55737 2.01059 2.06215 2.30750 2.44819 2.77878 3.09801 3.25093 3.35989 3.68185 3.80385 3.89227 4.10859 4.28194 4.30049 4.36351 4.46743 4.47391 4.52838 4.55963 4.67081 4.74036 4.85014 4.94821 4.99544 5.01706 5.18654 5.21123 5.26112 5.33885 5.36199 5.41564 5.52777 5.55123 5.66021 5.74727 5.80111 5.84292 6.09540 6.24023 6.37267 6.63036 6.69672 7.02419 7.34492 8.84780 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.003180 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.554037 B = 8802.839887 C = 9596.022802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.266 1.266 13 N -0.665 5.665 14 C 0.501 3.499 15 O -0.530 6.530 16 C 0.509 3.491 17 O -0.515 6.515 18 N -0.526 5.526 19 C 0.034 3.966 20 C 0.075 3.925 21 H 0.071 0.929 22 C -0.136 4.136 23 O -0.316 6.316 24 C 0.086 3.914 25 C -0.132 4.132 26 C -0.093 4.093 27 C -0.132 4.132 28 C -0.137 4.137 29 C 0.044 3.956 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 10.623 -11.582 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.039 0.961 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.791 3.209 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.190 1.190 13 N -0.313 5.313 14 C 0.281 3.719 15 O -0.410 6.410 16 C 0.294 3.706 17 O -0.392 6.392 18 N -0.251 5.251 19 C -0.087 4.087 20 C 0.018 3.982 21 H 0.089 0.911 22 C -0.193 4.193 23 O -0.231 6.231 24 C 0.039 3.961 25 C -0.150 4.150 26 C -0.112 4.112 27 C -0.150 4.150 28 C -0.157 4.157 29 C -0.049 4.049 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.175 0.825 43 H 0.185 0.815 44 H 0.169 0.831 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.484 10.479 -11.129 20.383 hybrid contribution 1.500 -0.430 0.177 1.570 sum -11.984 10.049 -10.952 19.093 Atomic orbital electron populations 1.21706 0.96482 0.99695 1.00443 1.21826 0.94191 0.98530 1.01693 1.18686 0.94098 0.89581 0.80086 0.96068 1.21502 0.91233 1.39666 1.06921 0.91498 1.25631 1.03010 0.94126 0.94911 1.69988 1.36961 1.37841 1.09725 0.85429 0.79404 0.77603 0.78431 1.20280 1.20700 1.19044 1.46278 1.13953 1.52572 1.18540 1.19781 0.83785 0.80819 0.87474 1.90444 1.50531 1.59385 1.40646 1.20460 0.81026 0.79942 0.89177 1.90541 1.51789 1.59557 1.37289 1.45505 1.18717 1.48116 1.12721 1.23999 0.94835 0.98420 0.91412 1.23022 0.96969 0.94207 0.83970 0.91056 1.21760 0.98429 1.04547 0.94542 1.86005 1.43917 1.80852 1.12299 1.18914 0.94019 0.94927 0.88217 1.20805 1.03133 1.01346 0.89760 1.21407 0.94432 0.97177 0.98148 1.21401 0.98338 0.97403 0.97906 1.22005 1.01118 1.01616 0.90964 1.18403 1.00855 0.98678 0.87004 0.94431 0.93382 0.94031 0.94396 0.90130 0.92319 0.75642 0.82775 0.89263 0.90659 0.88714 0.89673 0.82509 0.81521 0.83110 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.51 71.98 0.61 -4.58 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.47 2.24 44.25 0.10 13.57 16 4 H 0.02 1.18 7.58 -2.39 -0.02 1.16 16 5 C -0.56 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -49.19 11.29 21.45 0.24 -48.95 16 9 Si 0.97 41.10 29.54 68.60 2.03 43.13 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.66 -27.69 5.01 -447.56 -2.24 -29.93 16 14 C 0.50 19.47 6.36 87.23 0.56 20.03 16 15 O -0.53 -21.19 10.23 -3.29 -0.03 -21.23 16 16 C 0.51 18.22 7.70 87.23 0.67 18.89 16 17 O -0.52 -19.20 13.23 -3.39 -0.04 -19.24 16 18 N -0.53 -16.86 3.00 -629.43 -1.89 -18.75 16 19 C 0.03 0.93 5.45 86.41 0.47 1.40 16 20 C 0.07 1.74 3.59 30.77 0.11 1.85 16 21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 22 C -0.14 -2.24 9.58 71.98 0.69 -1.55 16 23 O -0.32 -7.97 9.97 -92.17 -0.92 -8.89 16 24 C 0.09 2.27 6.52 22.63 0.15 2.42 16 25 C -0.13 -2.65 9.97 22.37 0.22 -2.42 16 26 C -0.09 -1.60 10.03 22.28 0.22 -1.37 16 27 C -0.13 -2.77 10.05 22.28 0.22 -2.55 16 28 C -0.14 -3.94 8.99 22.37 0.20 -3.74 16 29 C 0.04 1.33 6.34 38.14 0.24 1.57 16 30 H 0.04 1.50 5.65 -2.39 -0.01 1.49 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.78 7.85 -2.39 -0.02 1.76 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.41 16.05 8.02 -92.71 -0.74 15.31 16 37 H 0.16 4.70 4.48 -42.29 -0.19 4.51 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.15 4.85 4.98 -14.92 -0.07 4.78 16 Total: -1.00 -60.47 360.10 2.49 -57.98 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.05 Total: 34.59 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.31 Total: 11.29 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -3.89 Total: -97.63 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.00 Total: -49.36 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -60.47 2.49 -57.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.653 kcal (2) G-P(sol) polarization free energy of solvation -60.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds