Wall clock time and date at job start Tue Mar 31 2020 17:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46904 * 2 1 4 4 H 1.09006 * 109.46996 * 305.00345 * 3 2 1 5 5 C 1.50696 * 109.46957 * 185.00659 * 3 2 1 6 6 H 1.08002 * 119.99788 * 239.99975 * 5 3 2 7 7 C 1.37870 * 120.00547 * 59.99714 * 5 3 2 8 8 N 1.31515 * 120.00010 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00381 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46930 * 59.99993 * 9 7 5 11 11 H 1.48500 * 109.47093 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47028 * 300.00111 * 9 7 5 13 13 N 1.46504 * 109.46869 * 65.00227 * 3 2 1 14 14 C 1.34774 * 120.00038 * 274.99600 * 13 3 2 15 15 O 1.21363 * 120.00232 * 0.02562 * 14 13 3 16 16 C 1.49326 * 119.99962 * 180.28054 * 14 13 3 17 17 O 1.21396 * 119.99925 * 353.54909 * 16 14 13 18 18 N 1.34778 * 120.00375 * 173.55572 * 16 14 13 19 19 C 1.47296 * 121.14237 * 0.48581 * 18 16 14 20 20 C 1.53143 * 107.80273 * 221.88057 * 19 18 16 21 21 H 1.09008 * 109.40681 * 61.88099 * 20 19 18 22 22 C 1.52993 * 109.75226 * 182.15357 * 20 19 18 23 23 O 1.42954 * 108.91473 * 302.12171 * 20 19 18 24 24 C 1.35888 * 117.74568 * 49.30245 * 23 20 19 25 25 C 1.38704 * 119.66564 * 159.92739 * 24 23 20 26 26 C 1.38207 * 120.05148 * 179.68910 * 25 24 23 27 27 C 1.38302 * 120.31156 * 359.97438 * 26 25 24 28 28 C 1.38227 * 120.07006 * 0.02562 * 27 26 25 29 29 C 1.38650 * 119.87403 * 0.09401 * 28 27 26 30 30 H 1.09005 * 109.46608 * 299.99713 * 1 2 3 31 31 H 1.08995 * 109.47707 * 59.99864 * 1 2 3 32 32 H 1.08995 * 109.47144 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46400 * 240.00367 * 2 1 3 34 34 H 1.08995 * 109.47330 * 119.99747 * 2 1 3 35 35 H 0.97001 * 120.00842 * 179.97438 * 8 7 5 36 36 H 0.96992 * 119.99768 * 95.00346 * 13 3 2 37 37 H 1.08995 * 109.83390 * 341.50315 * 19 18 16 38 38 H 1.08997 * 109.83180 * 102.45300 * 19 18 16 39 39 H 1.09001 * 109.47374 * 179.55934 * 22 20 19 40 40 H 1.09005 * 109.47174 * 299.55638 * 22 20 19 41 41 H 1.09003 * 109.47441 * 59.55702 * 22 20 19 42 42 H 1.07996 * 119.97398 * 359.65860 * 25 24 23 43 43 H 1.07997 * 119.84223 * 179.97438 * 26 25 24 44 44 H 1.07995 * 119.96098 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.06332 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1240 6 1 4.1472 1.8890 0.6521 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8802 -1.3814 10 1 6.5966 0.1454 -0.2346 11 1 6.3976 0.2169 -2.6507 12 1 6.5003 2.2801 -1.3811 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3671 15 8 -0.3402 2.6320 0.4339 16 6 0.0425 3.3374 2.6409 17 8 0.7701 3.2733 3.6106 18 7 -1.1198 4.0158 2.7143 19 6 -2.0267 4.1007 1.5567 20 6 -2.5514 5.5372 1.4773 21 1 -1.7163 6.2197 1.3192 22 6 -3.5424 5.6624 0.3184 23 8 -3.2076 5.8594 2.7058 24 6 -2.5490 5.5917 3.8639 25 6 -2.9231 6.2396 5.0319 26 6 -2.2630 5.9686 6.2155 27 6 -1.2280 5.0516 6.2434 28 6 -0.8478 4.4008 5.0847 29 6 -1.5048 4.6705 3.8939 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8290 -0.0602 -2.9504 36 1 2.2719 2.1232 1.9977 37 1 -1.4848 3.8543 0.6436 38 1 -2.8613 3.4123 1.6895 39 1 -3.9188 6.6842 0.2710 40 1 -3.0403 5.4164 -0.6173 41 1 -4.3742 4.9757 0.4758 42 1 -3.7305 6.9566 5.0163 43 1 -2.5567 6.4753 7.1229 44 1 -0.7163 4.8439 7.1715 45 1 -0.0399 3.6845 5.1067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275762862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:16 Heat of formation + Delta-G solvation = -54.598659 kcal Electronic energy + Delta-G solvation = -29306.755268 eV Core-core repulsion = 25290.671348 eV Total energy + Delta-G solvation = -4016.083920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62042 -39.86843 -38.44926 -37.61878 -36.02290 -35.03113 -32.73723 -32.53623 -31.11495 -30.56665 -29.21444 -27.43229 -26.75596 -24.90423 -23.46398 -22.90629 -22.58397 -20.73256 -19.96494 -19.67043 -18.44306 -17.76817 -17.47665 -16.45051 -16.28587 -15.99961 -15.72596 -15.39990 -15.16613 -14.62161 -14.35632 -14.19443 -14.02317 -13.79788 -13.49614 -13.24606 -13.08197 -12.81689 -12.63463 -12.28216 -12.19096 -11.93710 -11.78768 -11.70460 -11.39442 -11.31554 -11.07774 -10.99063 -10.91350 -10.59380 -10.41758 -10.32163 -10.15951 -9.76420 -9.23729 -8.83720 -8.64670 -8.54915 -8.17215 -7.88976 -6.24352 -4.34655 1.01975 1.32304 1.84228 2.31080 3.05252 3.20802 3.26050 3.27878 3.44379 3.67044 3.79000 4.25210 4.35092 4.63593 4.75121 4.81118 4.87581 4.99940 5.07917 5.16896 5.25742 5.36594 5.41505 5.47535 5.54005 5.76419 5.90092 5.91137 6.00906 6.18838 6.23976 6.28689 6.36206 6.47188 6.48070 6.77111 6.85925 6.93748 6.99841 7.06181 7.18024 7.28088 7.36878 7.54234 7.67773 7.76728 7.99641 8.30423 8.49524 8.75147 9.32516 10.80879 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.003180 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.182235 B = 8802.260155 C = 9592.722753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.499 3.501 15 O -0.523 6.523 16 C 0.509 3.491 17 O -0.502 6.502 18 N -0.530 5.530 19 C 0.035 3.965 20 C 0.073 3.927 21 H 0.076 0.924 22 C -0.141 4.141 23 O -0.314 6.314 24 C 0.100 3.900 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.133 4.133 28 C -0.118 4.118 29 C 0.075 3.925 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.267 0.733 36 H 0.403 0.597 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 9.287 9.814 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.308 5.308 14 C 0.279 3.721 15 O -0.404 6.404 16 C 0.294 3.706 17 O -0.378 6.378 18 N -0.254 5.254 19 C -0.086 4.086 20 C 0.016 3.984 21 H 0.094 0.906 22 C -0.198 4.198 23 O -0.228 6.228 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.127 4.127 27 C -0.152 4.152 28 C -0.137 4.137 29 C -0.019 4.019 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.184 0.816 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.424 9.116 9.338 18.018 hybrid contribution 1.299 -0.084 0.293 1.335 sum -11.125 9.033 9.631 17.265 Atomic orbital electron populations 1.21858 0.98257 0.98552 1.00972 1.21972 0.92672 0.99281 1.02890 1.19069 0.94899 0.89460 0.79850 0.92574 1.21151 0.90212 1.39766 1.06688 0.91792 1.24858 0.98888 0.94483 0.95186 1.69862 1.35437 1.37223 1.09304 0.86458 0.84405 0.78460 0.77553 1.20006 1.21047 1.20076 1.46515 1.13055 1.51887 1.19354 1.19508 0.84435 0.81360 0.86842 1.90434 1.50397 1.59508 1.40026 1.20911 0.80142 0.79407 0.90125 1.90534 1.51000 1.58960 1.37268 1.45501 1.19684 1.48417 1.11835 1.23893 0.95400 0.96796 0.92465 1.22846 0.96245 0.95902 0.83408 0.90615 1.21735 0.99017 1.03478 0.95611 1.86008 1.43879 1.80804 1.12130 1.18589 0.94013 0.94859 0.87210 1.20375 1.02842 1.01617 0.90354 1.20944 0.96106 0.98572 0.97114 1.21075 0.98066 0.97906 0.98105 1.22027 1.01056 1.00873 0.89773 1.18139 0.99362 0.97139 0.87236 0.94687 0.92862 0.95397 0.87743 0.94601 0.92306 0.76225 0.81569 0.89674 0.91082 0.89479 0.91179 0.84989 0.85495 0.85524 0.81337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.29 2.24 -69.08 -0.15 6.14 16 4 H 0.06 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.40 11.29 55.43 0.63 -22.77 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.66 -13.33 5.01 -55.40 -0.28 -13.61 16 14 C 0.50 9.41 6.36 -11.64 -0.07 9.33 16 15 O -0.52 -10.14 10.23 5.49 0.06 -10.09 16 16 C 0.51 8.85 7.70 -11.64 -0.09 8.76 16 17 O -0.50 -9.09 13.23 5.46 0.07 -9.02 16 18 N -0.53 -8.35 3.01 -113.12 -0.34 -8.69 16 19 C 0.04 0.48 5.42 -3.53 -0.02 0.46 16 20 C 0.07 0.87 3.56 -26.66 -0.10 0.77 16 21 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 22 C -0.14 -1.26 9.59 37.15 0.36 -0.91 16 23 O -0.31 -4.17 9.97 -19.39 -0.19 -4.37 16 24 C 0.10 1.39 6.52 -39.02 -0.25 1.14 16 25 C -0.13 -1.54 9.97 -39.42 -0.39 -1.93 16 26 C -0.11 -1.13 10.03 -39.57 -0.40 -1.53 16 27 C -0.13 -1.55 10.05 -39.56 -0.40 -1.95 16 28 C -0.12 -1.71 9.00 -39.43 -0.35 -2.07 16 29 C 0.08 1.15 6.34 -83.44 -0.53 0.62 16 30 H 0.03 0.69 5.64 -51.93 -0.29 0.40 16 31 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.40 7.69 8.02 -40.82 -0.33 7.36 16 37 H 0.17 2.47 4.50 -54.36 -0.24 2.22 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.17 2.67 4.98 -53.25 -0.27 2.40 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -27.56 360.09 -8.29 -35.85 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.01 Total: 11.35 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.63 Total: 0.99 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.01 Total: -45.07 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.56 -8.29 -35.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275762862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.748 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds