Wall clock time and date at job start Tue Mar 31 2020 17:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47511 * 2 1 4 4 C 1.53009 * 109.46796 * 240.00263 * 2 1 3 5 5 N 1.46493 * 109.47095 * 59.99798 * 4 2 1 6 6 C 1.46741 * 125.62205 * 90.00425 * 5 4 2 7 7 C 1.50823 * 106.30502 * 179.97438 * 6 5 4 8 8 C 1.37573 * 133.23981 * 179.97438 * 7 6 5 9 9 C 1.38476 * 119.95480 * 180.02562 * 8 7 6 10 10 C 1.38379 * 120.19188 * 359.97438 * 9 8 7 11 11 C 1.37944 * 120.31890 * 0.02803 * 10 9 8 12 12 C 1.39618 * 119.82786 * 359.97319 * 11 10 9 13 13 C 1.34546 * 125.70089 * 269.92955 * 5 4 2 14 14 O 1.21552 * 124.83354 * 0.02620 * 13 5 4 15 15 C 1.50691 * 109.47314 * 120.00383 * 2 1 3 16 16 O 1.21288 * 120.00497 * 94.99562 * 15 2 1 17 17 N 1.34781 * 119.99837 * 274.99707 * 15 2 1 18 18 C 1.46501 * 120.00068 * 179.97438 * 17 15 2 19 19 C 1.52992 * 109.47200 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.47240 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99908 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00214 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00103 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99819 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46956 * 90.00411 * 24 22 20 26 26 H 1.48499 * 109.46879 * 210.00278 * 24 22 20 27 27 H 1.48495 * 109.46793 * 330.00426 * 24 22 20 28 28 H 1.08993 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46447 * 299.99917 * 1 2 3 30 30 H 1.09002 * 109.46773 * 59.99350 * 1 2 3 31 31 H 0.96696 * 114.00306 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46787 * 299.99731 * 4 2 1 33 33 H 1.09000 * 109.46857 * 180.02562 * 4 2 1 34 34 H 1.09002 * 110.10027 * 60.75858 * 6 5 4 35 35 H 1.08996 * 110.09496 * 299.21489 * 6 5 4 36 36 H 1.07995 * 120.02534 * 0.02856 * 8 7 6 37 37 H 1.08003 * 119.90031 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.84106 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.08714 * 180.02562 * 11 10 9 40 40 H 0.96998 * 119.99922 * 359.97438 * 17 15 2 41 41 H 1.09004 * 109.47190 * 300.00241 * 18 17 15 42 42 H 1.09002 * 109.46861 * 59.99672 * 18 17 15 43 43 H 1.09004 * 109.47095 * 300.00115 * 19 18 17 44 44 H 1.09002 * 109.47631 * 59.99960 * 19 18 17 45 45 H 0.97008 * 120.00376 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.5516 -0.0306 -2.4454 6 6 2.2407 1.0609 -3.1433 7 6 1.3591 1.4435 -4.3057 8 6 1.4696 2.3852 -5.3025 9 6 0.4716 2.5043 -6.2550 10 6 -0.6375 1.6781 -6.2080 11 6 -0.7582 0.7306 -5.2127 12 6 0.2438 0.6044 -4.2487 13 6 0.3984 -0.2922 -3.0872 14 8 -0.4019 -1.1455 -2.7570 15 6 2.0324 -0.7104 1.2303 16 8 2.3208 -1.8873 1.1759 17 7 2.1612 -0.0381 2.3913 18 6 2.6491 -0.7289 3.5876 19 6 2.7001 0.2540 4.7589 20 6 3.2025 -0.4564 5.9894 21 1 3.4593 -1.5043 5.9409 22 6 3.3334 0.2312 7.1773 23 7 3.7713 -0.3889 8.2511 24 14 2.8885 2.0435 7.2614 25 1 1.4556 2.1851 7.6246 26 1 3.7278 2.7121 8.2880 27 1 3.1286 2.6739 5.9385 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 1.6767 -1.7489 -1.2493 33 1 3.1300 -0.7217 -1.2492 34 1 3.2108 0.7206 -3.5054 35 1 2.3684 1.9116 -2.4740 36 1 2.3342 3.0311 -5.3422 37 1 0.5591 3.2442 -7.0369 38 1 -1.4123 1.7755 -6.9540 39 1 -1.6252 0.0874 -5.1798 40 1 1.9309 0.9031 2.4348 41 1 1.9761 -1.5507 3.8325 42 1 3.6481 -1.1215 3.3984 43 1 3.3728 1.0761 4.5143 44 1 1.7008 0.6463 4.9480 45 1 3.8638 0.0949 9.0869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277009879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:44 Heat of formation + Delta-G solvation = -80.472441 kcal Electronic energy + Delta-G solvation = -28071.666374 eV Core-core repulsion = 24054.460483 eV Total energy + Delta-G solvation = -4017.205891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59663 -40.08973 -38.47526 -37.20576 -36.10554 -35.15490 -32.91038 -32.75357 -31.53479 -30.89318 -30.01549 -27.41185 -27.03402 -25.46370 -23.90299 -22.35148 -22.08702 -20.85621 -20.30479 -20.01728 -18.25199 -17.31106 -17.03730 -16.87310 -16.82990 -16.14117 -15.65693 -15.35117 -15.25823 -14.90366 -14.58451 -14.36301 -14.19348 -13.93660 -13.74905 -13.64870 -13.55904 -13.14425 -12.85386 -12.63688 -12.52039 -12.39081 -12.22511 -12.10779 -11.88691 -11.54542 -11.51080 -11.26983 -11.19753 -10.44569 -10.31312 -10.15954 -9.98994 -9.64845 -9.46313 -9.37707 -9.29200 -8.85536 -8.70257 -8.60910 -6.13816 -4.14363 0.37227 0.83211 2.33949 2.48277 2.65205 3.23704 3.31422 3.32294 3.35105 3.47535 3.66484 3.86446 4.03346 4.35270 4.40979 4.41781 4.52313 4.58615 4.79403 4.82240 4.89996 5.00170 5.02427 5.18989 5.20554 5.29323 5.42901 5.47417 5.61489 5.66878 5.72211 5.82943 5.92831 6.02600 6.04584 6.13127 6.20112 6.35114 6.49722 6.63661 6.66701 7.04138 7.16454 7.18240 7.62641 7.77966 7.84757 8.34868 8.42825 8.90024 9.46066 10.99045 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002220 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.860325 B =12607.870277 C =13083.744712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.102 3.898 3 O -0.545 6.545 4 C 0.126 3.874 5 N -0.604 5.604 6 C 0.139 3.861 7 C -0.079 4.079 8 C -0.104 4.104 9 C -0.089 4.089 10 C -0.129 4.129 11 C -0.047 4.047 12 C -0.156 4.156 13 C 0.557 3.443 14 O -0.519 6.519 15 C 0.485 3.515 16 O -0.540 6.540 17 N -0.712 5.712 18 C 0.128 3.872 19 C -0.022 4.022 20 C -0.524 4.524 21 H 0.076 0.924 22 C 0.069 3.931 23 N -0.897 5.897 24 Si 0.882 3.118 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.266 1.266 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.379 0.621 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.402 0.598 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 9.199 -31.535 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 O -0.351 6.351 4 C 0.004 3.996 5 N -0.337 5.337 6 C 0.016 3.984 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.107 4.107 10 C -0.147 4.147 11 C -0.066 4.066 12 C -0.159 4.159 13 C 0.346 3.654 14 O -0.395 6.395 15 C 0.268 3.732 16 O -0.418 6.418 17 N -0.363 5.363 18 C 0.006 3.994 19 C -0.059 4.059 20 C -0.562 4.562 21 H 0.094 0.906 22 C -0.133 4.133 23 N -0.535 5.535 24 Si 0.709 3.291 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.191 1.191 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.237 0.763 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.361 7.971 -31.055 32.507 hybrid contribution 0.345 1.356 0.331 1.438 sum -5.016 9.327 -30.724 32.498 Atomic orbital electron populations 1.21694 0.89846 1.03842 1.03355 1.21951 0.97574 0.82621 0.92130 1.86605 1.27015 1.24623 1.96843 1.21826 0.99735 0.97128 0.80883 1.47723 1.21765 1.36451 1.27729 1.20554 0.95144 0.90999 0.91717 1.20492 0.95822 0.95848 0.95894 1.20316 0.99980 0.97995 0.93948 1.21340 0.93240 0.98267 0.97883 1.21148 0.98709 0.96061 0.98797 1.20897 0.97216 0.96617 0.91832 1.20438 0.97400 0.99834 0.98244 1.18301 0.81327 0.83018 0.82736 1.90808 1.44859 1.34126 1.69721 1.21012 0.78938 0.87778 0.85460 1.90730 1.50004 1.15680 1.85380 1.46329 1.65276 1.14528 1.10119 1.21581 0.98893 0.96243 0.82730 1.19791 0.97051 0.95413 0.93672 1.20902 1.44567 0.98570 0.92192 0.90624 1.25004 0.94461 0.98326 0.95500 1.69900 1.46148 1.36747 1.00747 0.86749 0.78697 0.85506 0.78109 1.20203 1.21248 1.19067 0.89944 0.91292 0.91212 0.77300 0.87166 0.88995 0.88727 0.87782 0.85057 0.84983 0.85001 0.85009 0.76328 0.91808 0.91772 0.95967 0.96401 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 7.86 37.16 0.29 -1.39 16 2 C 0.10 1.22 1.08 -91.77 -0.10 1.12 16 3 O -0.55 -5.26 11.38 -35.23 -0.40 -5.66 16 4 C 0.13 1.38 4.75 -4.04 -0.02 1.36 16 5 N -0.60 -6.11 2.59 -176.10 -0.46 -6.56 16 6 C 0.14 0.95 7.22 -5.00 -0.04 0.92 16 7 C -0.08 -0.61 6.38 -104.27 -0.66 -1.27 16 8 C -0.10 -0.59 10.03 -39.74 -0.40 -0.99 16 9 C -0.09 -0.46 10.05 -39.44 -0.40 -0.85 16 10 C -0.13 -0.77 10.02 -39.64 -0.40 -1.17 16 11 C -0.05 -0.39 10.10 -39.17 -0.40 -0.79 16 12 C -0.16 -1.56 6.26 -105.05 -0.66 -2.22 16 13 C 0.56 6.93 6.41 -12.57 -0.08 6.85 16 14 O -0.52 -8.18 16.78 5.32 0.09 -8.09 16 15 C 0.49 7.47 6.69 -10.99 -0.07 7.40 16 16 O -0.54 -10.22 16.10 5.55 0.09 -10.13 16 17 N -0.71 -11.35 5.47 -60.30 -0.33 -11.68 16 18 C 0.13 2.54 5.61 -4.05 -0.02 2.52 16 19 C -0.02 -0.49 4.16 -27.89 -0.12 -0.60 16 20 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 21 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 24 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.92 6.20 -51.93 -0.32 0.60 16 31 H 0.38 2.42 9.04 45.56 0.41 2.83 16 32 H 0.11 1.45 7.74 -51.93 -0.40 1.04 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.61 7.51 -51.93 -0.39 0.22 16 36 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.13 0.34 8.06 -52.48 -0.42 -0.09 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.40 5.66 7.91 -40.82 -0.32 5.34 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 44 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -35.23 376.80 -8.33 -43.56 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.61 Total: 5.12 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -3.50 Total: -2.12 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.01 Total: -44.62 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.22 Total: -23.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.23 -8.33 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277009879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.916 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds