Wall clock time and date at job start Tue Mar 31 2020 17:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47511 * 2 1 4 4 C 1.53009 * 109.46796 * 240.00263 * 2 1 3 5 5 N 1.46493 * 109.47095 * 59.99798 * 4 2 1 6 6 C 1.46741 * 125.62205 * 90.00425 * 5 4 2 7 7 C 1.50823 * 106.30502 * 179.97438 * 6 5 4 8 8 C 1.37573 * 133.23981 * 179.97438 * 7 6 5 9 9 C 1.38476 * 119.95480 * 180.02562 * 8 7 6 10 10 C 1.38379 * 120.19188 * 359.97438 * 9 8 7 11 11 C 1.37944 * 120.31890 * 0.02803 * 10 9 8 12 12 C 1.39618 * 119.82786 * 359.97319 * 11 10 9 13 13 C 1.34546 * 125.70089 * 269.92955 * 5 4 2 14 14 O 1.21552 * 124.83354 * 0.02620 * 13 5 4 15 15 C 1.50691 * 109.47314 * 120.00383 * 2 1 3 16 16 O 1.21288 * 120.00497 * 94.99562 * 15 2 1 17 17 N 1.34781 * 119.99837 * 274.99707 * 15 2 1 18 18 C 1.46501 * 120.00068 * 179.97438 * 17 15 2 19 19 C 1.52992 * 109.47200 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.47240 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99908 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00214 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00103 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99819 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46956 * 90.00411 * 24 22 20 26 26 H 1.48499 * 109.46879 * 210.00278 * 24 22 20 27 27 H 1.48495 * 109.46793 * 330.00426 * 24 22 20 28 28 H 1.08993 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46447 * 299.99917 * 1 2 3 30 30 H 1.09002 * 109.46773 * 59.99350 * 1 2 3 31 31 H 0.96696 * 114.00306 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46787 * 299.99731 * 4 2 1 33 33 H 1.09000 * 109.46857 * 180.02562 * 4 2 1 34 34 H 1.09002 * 110.10027 * 60.75858 * 6 5 4 35 35 H 1.08996 * 110.09496 * 299.21489 * 6 5 4 36 36 H 1.07995 * 120.02534 * 0.02856 * 8 7 6 37 37 H 1.08003 * 119.90031 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.84106 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.08714 * 180.02562 * 11 10 9 40 40 H 0.96998 * 119.99922 * 359.97438 * 17 15 2 41 41 H 1.09004 * 109.47190 * 300.00241 * 18 17 15 42 42 H 1.09002 * 109.46861 * 59.99672 * 18 17 15 43 43 H 1.09004 * 109.47095 * 300.00115 * 19 18 17 44 44 H 1.09002 * 109.47631 * 59.99960 * 19 18 17 45 45 H 0.97008 * 120.00376 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.5516 -0.0306 -2.4454 6 6 2.2407 1.0609 -3.1433 7 6 1.3591 1.4435 -4.3057 8 6 1.4696 2.3852 -5.3025 9 6 0.4716 2.5043 -6.2550 10 6 -0.6375 1.6781 -6.2080 11 6 -0.7582 0.7306 -5.2127 12 6 0.2438 0.6044 -4.2487 13 6 0.3984 -0.2922 -3.0872 14 8 -0.4019 -1.1455 -2.7570 15 6 2.0324 -0.7104 1.2303 16 8 2.3208 -1.8873 1.1759 17 7 2.1612 -0.0381 2.3913 18 6 2.6491 -0.7289 3.5876 19 6 2.7001 0.2540 4.7589 20 6 3.2025 -0.4564 5.9894 21 1 3.4593 -1.5043 5.9409 22 6 3.3334 0.2312 7.1773 23 7 3.7713 -0.3889 8.2511 24 14 2.8885 2.0435 7.2614 25 1 1.4556 2.1851 7.6246 26 1 3.7278 2.7121 8.2880 27 1 3.1286 2.6739 5.9385 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 1.6767 -1.7489 -1.2493 33 1 3.1300 -0.7217 -1.2492 34 1 3.2108 0.7206 -3.5054 35 1 2.3684 1.9116 -2.4740 36 1 2.3342 3.0311 -5.3422 37 1 0.5591 3.2442 -7.0369 38 1 -1.4123 1.7755 -6.9540 39 1 -1.6252 0.0874 -5.1798 40 1 1.9309 0.9031 2.4348 41 1 1.9761 -1.5507 3.8325 42 1 3.6481 -1.1215 3.3984 43 1 3.3728 1.0761 4.5143 44 1 1.7008 0.6463 4.9480 45 1 3.8638 0.0949 9.0869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277009879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:43 Heat of formation + Delta-G solvation = -107.487083 kcal Electronic energy + Delta-G solvation = -28072.837817 eV Core-core repulsion = 24054.460483 eV Total energy + Delta-G solvation = -4018.377334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34508 -41.22712 -39.20774 -38.23952 -36.92125 -36.72129 -34.80369 -33.63804 -32.19612 -32.03484 -31.35767 -28.23688 -27.66866 -27.18432 -24.91260 -23.35558 -22.61302 -22.55886 -21.31025 -20.93051 -19.39673 -18.96492 -17.96853 -17.83901 -17.55670 -16.97852 -16.82153 -16.59003 -16.23491 -16.10054 -15.74845 -15.47279 -15.26507 -15.01788 -14.66763 -14.54243 -14.52985 -14.45029 -14.02655 -13.60432 -13.44676 -13.36746 -13.33600 -13.14953 -13.05789 -12.82379 -12.72196 -12.21942 -12.18788 -12.14277 -11.98086 -11.77074 -11.52237 -11.03957 -10.80042 -10.77900 -10.15047 -10.10679 -9.88448 -9.59045 -8.30848 -6.38263 -0.20534 0.36533 1.36644 1.39113 1.40924 1.51731 1.52417 1.75597 2.20377 2.35928 2.83248 2.96120 3.04186 3.10720 3.42378 3.44009 3.59370 3.69175 3.94381 4.19704 4.26329 4.31464 4.37811 4.39826 4.42600 4.49852 4.54509 4.56890 4.59223 4.68780 4.72700 4.81410 4.97378 5.01546 5.09629 5.13851 5.36904 5.38281 5.39736 5.47533 5.54278 5.61120 5.86898 5.94470 6.20302 6.34319 6.61851 6.70003 6.99172 7.11040 7.26345 8.85701 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002220 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.860325 B =12607.870277 C =13083.744712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.125 3.875 3 O -0.537 6.537 4 C 0.128 3.872 5 N -0.600 5.600 6 C 0.136 3.864 7 C -0.079 4.079 8 C -0.102 4.102 9 C -0.080 4.080 10 C -0.130 4.130 11 C -0.066 4.066 12 C -0.193 4.193 13 C 0.543 3.457 14 O -0.572 6.572 15 C 0.488 3.512 16 O -0.577 6.577 17 N -0.702 5.702 18 C 0.142 3.858 19 C -0.013 4.013 20 C -0.539 4.539 21 H 0.029 0.971 22 C 0.004 3.996 23 N -0.949 5.949 24 Si 0.958 3.042 25 H -0.269 1.269 26 H -0.286 1.286 27 H -0.235 1.235 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.416 0.584 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 13.688 -34.236 37.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 O -0.345 6.345 4 C 0.006 3.994 5 N -0.331 5.331 6 C 0.015 3.985 7 C -0.080 4.080 8 C -0.120 4.120 9 C -0.098 4.098 10 C -0.148 4.148 11 C -0.085 4.085 12 C -0.196 4.196 13 C 0.334 3.666 14 O -0.453 6.453 15 C 0.273 3.727 16 O -0.457 6.457 17 N -0.353 5.353 18 C 0.019 3.981 19 C -0.050 4.050 20 C -0.577 4.577 21 H 0.048 0.952 22 C -0.194 4.194 23 N -0.589 5.589 24 Si 0.781 3.219 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.157 1.157 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.253 0.747 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.612 12.508 -33.801 36.335 hybrid contribution 0.154 -0.096 1.105 1.119 sum -4.458 12.412 -32.697 35.256 Atomic orbital electron populations 1.21611 0.90770 1.02601 1.03413 1.21545 0.96618 0.83436 0.90450 1.86592 1.28967 1.22370 1.96583 1.21717 1.01075 0.95668 0.80968 1.47782 1.21343 1.36877 1.27089 1.20851 0.95595 0.90426 0.91656 1.20701 0.94862 0.95840 0.96632 1.20731 1.01020 0.97362 0.92851 1.21815 0.92121 0.97841 0.98047 1.21451 0.99848 0.95218 0.98286 1.21042 0.96999 0.97712 0.92760 1.20416 0.99581 1.01075 0.98549 1.18896 0.81328 0.82794 0.83562 1.90759 1.46712 1.36490 1.71340 1.21636 0.77707 0.87310 0.86036 1.90723 1.51398 1.17579 1.85968 1.46061 1.65183 1.15035 1.09054 1.21104 0.97967 0.95365 0.83705 1.19648 0.97610 0.95683 0.92093 1.21241 1.44574 0.97123 0.94788 0.95244 1.26082 0.94210 1.04286 0.94790 1.70072 1.47910 1.39273 1.01677 0.85550 0.78498 0.78336 0.79561 1.19378 1.21173 1.15742 0.92008 0.90777 0.91429 0.75052 0.90134 0.86285 0.85996 0.85897 0.81849 0.81633 0.82759 0.86045 0.74675 0.94005 0.92933 0.94108 0.95062 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 7.86 71.98 0.57 -2.71 16 2 C 0.13 2.82 1.08 -11.54 -0.01 2.81 16 3 O -0.54 -8.53 11.38 -148.98 -1.69 -10.22 16 4 C 0.13 2.72 4.75 86.38 0.41 3.13 16 5 N -0.60 -11.62 2.59 -829.46 -2.15 -13.77 16 6 C 0.14 1.46 7.22 85.63 0.62 2.07 16 7 C -0.08 -1.01 6.38 -19.63 -0.13 -1.14 16 8 C -0.10 -0.73 10.03 22.17 0.22 -0.51 16 9 C -0.08 -0.51 10.05 22.36 0.22 -0.28 16 10 C -0.13 -1.28 10.02 22.23 0.22 -1.05 16 11 C -0.07 -1.11 10.10 22.53 0.23 -0.88 16 12 C -0.19 -3.84 6.26 -20.14 -0.13 -3.96 16 13 C 0.54 14.03 6.41 86.73 0.56 14.58 16 14 O -0.57 -19.61 16.78 -3.88 -0.07 -19.68 16 15 C 0.49 14.69 6.69 87.65 0.59 15.27 16 16 O -0.58 -22.19 16.10 -3.06 -0.05 -22.24 16 17 N -0.70 -21.28 5.47 -463.06 -2.53 -23.81 16 18 C 0.14 5.65 5.61 86.38 0.48 6.14 16 19 C -0.01 -0.55 4.16 29.85 0.12 -0.43 16 20 C -0.54 -30.48 9.66 25.60 0.25 -30.23 16 21 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 22 C 0.00 0.20 5.47 84.66 0.46 0.67 16 23 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 24 Si 0.96 42.03 27.47 68.60 1.88 43.92 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.23 -9.04 6.54 99.48 0.65 -8.39 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.80 6.20 -2.39 -0.01 1.79 16 31 H 0.40 3.29 9.04 -74.06 -0.67 2.62 16 32 H 0.08 2.23 7.74 -2.39 -0.02 2.21 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.90 7.51 -2.39 -0.02 0.88 16 36 H 0.16 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.17 -0.05 8.06 -2.91 -0.02 -0.08 16 38 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 39 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.42 10.42 7.91 -92.71 -0.73 9.68 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 44 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 45 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -82.23 376.80 -0.05 -82.27 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.43 Total: 18.67 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.69 Total: 3.48 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.38 Total: -96.21 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.81 Total: -52.13 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Total: -82.23 -0.05 -82.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277009879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.212 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds