Wall clock time and date at job start Tue Mar 31 2020 17:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00026 * 2 1 4 4 C 1.50706 * 109.47036 * 270.00117 * 3 2 1 5 5 H 1.07995 * 119.99772 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99772 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99872 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00145 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46797 * 90.00014 * 8 6 4 10 10 H 1.48498 * 109.47122 * 209.99942 * 8 6 4 11 11 H 1.48495 * 109.46976 * 330.00181 * 8 6 4 12 12 C 1.34771 * 120.00265 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00452 * 184.48253 * 12 2 1 14 14 C 1.50707 * 119.99881 * 4.48441 * 12 2 1 15 15 C 1.52995 * 109.46946 * 285.10775 * 14 12 2 16 16 O 1.42899 * 109.47035 * 45.10848 * 14 12 2 17 17 C 1.52998 * 109.47184 * 165.10599 * 14 12 2 18 18 N 1.46498 * 109.47400 * 179.97438 * 17 14 12 19 19 C 1.46736 * 125.62295 * 89.99760 * 18 17 14 20 20 C 1.50823 * 106.30403 * 179.97438 * 19 18 17 21 21 C 1.37575 * 133.23709 * 179.97438 * 20 19 18 22 22 C 1.38478 * 119.95641 * 180.02562 * 21 20 19 23 23 C 1.38391 * 120.18408 * 359.97438 * 22 21 20 24 24 C 1.37939 * 120.32162 * 0.03206 * 23 22 21 25 25 C 1.39620 * 119.82837 * 359.97052 * 24 23 22 26 26 C 1.34542 * 125.69496 * 269.93262 * 18 17 14 27 27 O 1.21550 * 124.83978 * 0.02562 * 26 18 17 28 28 H 1.09005 * 109.47271 * 275.44920 * 1 2 3 29 29 H 1.09005 * 109.47438 * 35.45576 * 1 2 3 30 30 H 1.08999 * 109.47008 * 155.45124 * 1 2 3 31 31 H 1.09002 * 109.46924 * 29.99743 * 3 2 1 32 32 H 1.09000 * 109.47162 * 150.00127 * 3 2 1 33 33 H 0.96996 * 120.00257 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47179 * 299.99881 * 15 14 12 35 35 H 1.08996 * 109.47287 * 59.99929 * 15 14 12 36 36 H 1.09004 * 109.46913 * 180.02562 * 15 14 12 37 37 H 0.96704 * 113.99803 * 59.99833 * 16 14 12 38 38 H 1.09001 * 109.47016 * 60.00072 * 17 14 12 39 39 H 1.08998 * 109.47230 * 300.00274 * 17 14 12 40 40 H 1.09003 * 110.09416 * 60.76678 * 19 18 17 41 41 H 1.08996 * 110.09935 * 299.22695 * 19 18 17 42 42 H 1.08000 * 120.02553 * 0.02927 * 21 20 19 43 43 H 1.07997 * 119.90786 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.83320 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.08306 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3447 3.2580 -2.9127 8 14 3.7317 3.9300 -0.2529 9 1 5.1051 3.5093 0.1240 10 1 3.7465 5.3566 -0.6650 11 1 2.8250 3.7603 0.9108 12 6 2.1388 -1.1671 -0.0005 13 8 3.3489 -1.1688 0.0816 14 6 1.3888 -2.4703 -0.1032 15 6 0.7156 -2.7780 1.2358 16 8 0.3942 -2.3682 -1.1241 17 6 2.3655 -3.5947 -0.4533 18 7 1.6366 -4.8615 -0.5525 19 6 1.0238 -5.4018 -1.7714 20 6 0.3946 -6.7161 -1.3822 21 6 -0.3128 -7.6662 -2.0820 22 6 -0.7758 -8.7995 -1.4348 23 6 -0.5286 -8.9799 -0.0852 24 6 0.1794 -8.0334 0.6258 25 6 0.6495 -6.8881 -0.0198 26 6 1.4188 -5.7231 0.4577 27 8 1.8012 -5.5642 1.6005 28 1 -0.3634 0.0976 1.0231 29 1 -0.3634 0.8371 -0.5961 30 1 -0.3633 -0.9348 -0.4270 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8208 4.0842 -3.0900 34 1 1.4743 -2.8558 2.0146 35 1 0.0198 -1.9770 1.4853 36 1 0.1735 -3.7208 1.1617 37 1 0.7501 -2.1739 -2.0020 38 1 3.1242 -3.6725 0.3254 39 1 2.8451 -3.3754 -1.4072 40 1 1.7859 -5.5629 -2.5339 41 1 0.2618 -4.7168 -2.1429 42 1 -0.5068 -7.5283 -3.1355 43 1 -1.3313 -9.5446 -1.9848 44 1 -0.8927 -9.8657 0.4140 45 1 0.3698 -8.1779 1.6790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277057813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:53 Heat of formation + Delta-G solvation = -55.009469 kcal Electronic energy + Delta-G solvation = -29082.172433 eV Core-core repulsion = 25066.070699 eV Total energy + Delta-G solvation = -4016.101734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44791 -39.93331 -38.31464 -36.90167 -35.96231 -35.03922 -32.65164 -32.53397 -31.41910 -30.62218 -28.47088 -27.16728 -26.88109 -26.02043 -24.06578 -22.93567 -21.96558 -21.27102 -20.01482 -19.14128 -17.59846 -17.16213 -16.98989 -16.72562 -16.57719 -15.88623 -15.52410 -15.21913 -14.88817 -14.74866 -14.46247 -14.32801 -14.03790 -13.67720 -13.58746 -13.42916 -13.30446 -12.76322 -12.42314 -12.40912 -12.32961 -12.23045 -12.05464 -11.99955 -11.78567 -11.59668 -11.44582 -11.35076 -11.08132 -10.56925 -10.38152 -10.12973 -10.00057 -9.58650 -9.44059 -9.27171 -9.07321 -8.63245 -8.55213 -7.72532 -6.13820 -4.12819 0.49209 0.94290 2.53808 2.62947 3.07905 3.27139 3.33186 3.35540 3.51707 3.76662 3.80636 4.13927 4.18599 4.36287 4.53344 4.62389 4.66089 4.84314 4.89872 4.94781 5.04920 5.12737 5.18690 5.20615 5.37500 5.48840 5.58739 5.67697 5.77483 5.82454 5.86644 5.94036 5.96260 5.98518 6.03018 6.21644 6.37520 6.45774 6.46516 6.65860 6.85309 6.89897 7.26379 7.43598 7.56053 8.00613 8.17547 8.40477 8.79092 8.88439 9.46722 10.99288 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.002719 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.758527 B =10294.255701 C =10600.870901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.580 5.580 3 C 0.211 3.789 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.487 3.513 13 O -0.539 6.539 14 C 0.105 3.895 15 C -0.133 4.133 16 O -0.539 6.539 17 C 0.128 3.872 18 N -0.602 5.602 19 C 0.137 3.863 20 C -0.078 4.078 21 C -0.104 4.104 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.048 4.048 25 C -0.155 4.155 26 C 0.557 3.443 27 O -0.522 6.522 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.383 0.617 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -23.414 1.692 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.310 5.310 3 C 0.090 3.910 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.271 3.729 13 O -0.417 6.417 14 C 0.060 3.940 15 C -0.190 4.190 16 O -0.346 6.346 17 C 0.006 3.994 18 N -0.334 5.334 19 C 0.015 3.985 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.067 4.067 25 C -0.158 4.158 26 C 0.345 3.655 27 O -0.399 6.399 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.373 -23.143 2.740 25.509 hybrid contribution 0.626 0.956 0.011 1.143 sum -9.746 -22.188 2.751 24.389 Atomic orbital electron populations 1.22406 0.80275 1.05836 1.00698 1.47766 1.06845 1.06560 1.69864 1.19734 0.92592 0.80198 0.98464 1.21276 1.37081 1.07286 0.91066 0.90790 1.24849 0.95190 0.97324 0.95607 1.69885 1.41440 1.23580 1.18640 0.86845 0.80146 0.79770 0.82933 1.19860 1.21016 1.19063 1.20771 0.87975 0.85631 0.78483 1.90694 1.13820 1.87090 1.50142 1.21875 0.88943 0.92293 0.90916 1.21786 1.01473 1.02608 0.93155 1.86419 1.34814 1.93187 1.20221 1.21822 0.93001 0.79567 1.05013 1.47771 1.55229 1.20425 1.09995 1.20568 0.98027 0.91919 0.88021 1.20518 0.97087 0.95740 0.94572 1.20321 0.98414 0.93265 1.00251 1.21326 0.97962 0.96866 0.94683 1.21129 0.99656 0.99475 0.94578 1.20881 0.94310 0.91217 1.00265 1.20468 1.02966 0.96933 0.95473 1.18287 0.79518 0.82862 0.84793 1.90793 1.52828 1.77810 1.18441 0.94357 0.91365 0.87255 0.95166 0.94497 0.92508 0.90383 0.91170 0.91469 0.76811 0.87439 0.88696 0.88669 0.87678 0.85061 0.85057 0.85101 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 9.02 59.84 0.54 1.37 16 2 N -0.58 -11.89 2.86 -182.95 -0.52 -12.41 16 3 C 0.21 5.17 4.29 -5.19 -0.02 5.15 16 4 C -0.53 -14.90 9.94 -34.44 -0.34 -15.25 16 5 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 8 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.49 9.60 6.63 -10.98 -0.07 9.53 16 13 O -0.54 -12.69 15.55 5.55 0.09 -12.61 16 14 C 0.10 1.54 0.72 -91.77 -0.07 1.48 16 15 C -0.13 -1.93 7.66 37.16 0.28 -1.65 16 16 O -0.54 -6.71 8.88 -35.23 -0.31 -7.02 16 17 C 0.13 1.76 4.63 -4.04 -0.02 1.74 16 18 N -0.60 -7.28 2.59 -176.10 -0.46 -7.74 16 19 C 0.14 1.20 7.22 -5.01 -0.04 1.16 16 20 C -0.08 -0.70 6.37 -104.27 -0.66 -1.37 16 21 C -0.10 -0.71 10.03 -39.73 -0.40 -1.11 16 22 C -0.09 -0.55 10.05 -39.44 -0.40 -0.95 16 23 C -0.13 -0.90 10.02 -39.63 -0.40 -1.30 16 24 C -0.05 -0.45 10.10 -39.18 -0.40 -0.84 16 25 C -0.16 -1.75 6.26 -105.05 -0.66 -2.41 16 26 C 0.56 7.75 6.41 -12.57 -0.08 7.67 16 27 O -0.52 -8.93 16.78 5.32 0.09 -8.84 16 28 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 29 H 0.07 1.16 8.11 -51.93 -0.42 0.73 16 30 H 0.11 1.58 4.10 -45.54 -0.19 1.40 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.97 6.22 -51.93 -0.32 0.65 16 36 H 0.07 0.97 6.20 -51.93 -0.32 0.65 16 37 H 0.38 4.02 9.04 52.41 0.47 4.50 16 38 H 0.11 1.70 7.81 -51.93 -0.41 1.29 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.81 7.51 -51.93 -0.39 0.42 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -35.87 367.37 -7.55 -43.42 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.25 Total: 4.01 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.82 Total: 5.23 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.21 Total: -46.61 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.14 Total: -28.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.87 -7.55 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277057813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.588 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds