Wall clock time and date at job start Tue Mar 31 2020 17:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00026 * 2 1 4 4 C 1.50706 * 109.47036 * 270.00117 * 3 2 1 5 5 H 1.07995 * 119.99772 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99772 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99872 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00145 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46797 * 90.00014 * 8 6 4 10 10 H 1.48498 * 109.47122 * 209.99942 * 8 6 4 11 11 H 1.48495 * 109.46976 * 330.00181 * 8 6 4 12 12 C 1.34771 * 120.00265 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00452 * 184.48253 * 12 2 1 14 14 C 1.50707 * 119.99881 * 4.48441 * 12 2 1 15 15 C 1.52995 * 109.46946 * 285.10775 * 14 12 2 16 16 O 1.42899 * 109.47035 * 45.10848 * 14 12 2 17 17 C 1.52998 * 109.47184 * 165.10599 * 14 12 2 18 18 N 1.46498 * 109.47400 * 179.97438 * 17 14 12 19 19 C 1.46736 * 125.62295 * 89.99760 * 18 17 14 20 20 C 1.50823 * 106.30403 * 179.97438 * 19 18 17 21 21 C 1.37575 * 133.23709 * 179.97438 * 20 19 18 22 22 C 1.38478 * 119.95641 * 180.02562 * 21 20 19 23 23 C 1.38391 * 120.18408 * 359.97438 * 22 21 20 24 24 C 1.37939 * 120.32162 * 0.03206 * 23 22 21 25 25 C 1.39620 * 119.82837 * 359.97052 * 24 23 22 26 26 C 1.34542 * 125.69496 * 269.93262 * 18 17 14 27 27 O 1.21550 * 124.83978 * 0.02562 * 26 18 17 28 28 H 1.09005 * 109.47271 * 275.44920 * 1 2 3 29 29 H 1.09005 * 109.47438 * 35.45576 * 1 2 3 30 30 H 1.08999 * 109.47008 * 155.45124 * 1 2 3 31 31 H 1.09002 * 109.46924 * 29.99743 * 3 2 1 32 32 H 1.09000 * 109.47162 * 150.00127 * 3 2 1 33 33 H 0.96996 * 120.00257 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47179 * 299.99881 * 15 14 12 35 35 H 1.08996 * 109.47287 * 59.99929 * 15 14 12 36 36 H 1.09004 * 109.46913 * 180.02562 * 15 14 12 37 37 H 0.96704 * 113.99803 * 59.99833 * 16 14 12 38 38 H 1.09001 * 109.47016 * 60.00072 * 17 14 12 39 39 H 1.08998 * 109.47230 * 300.00274 * 17 14 12 40 40 H 1.09003 * 110.09416 * 60.76678 * 19 18 17 41 41 H 1.08996 * 110.09935 * 299.22695 * 19 18 17 42 42 H 1.08000 * 120.02553 * 0.02927 * 21 20 19 43 43 H 1.07997 * 119.90786 * 179.97438 * 22 21 20 44 44 H 1.07998 * 119.83320 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.08306 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3447 3.2580 -2.9127 8 14 3.7317 3.9300 -0.2529 9 1 5.1051 3.5093 0.1240 10 1 3.7465 5.3566 -0.6650 11 1 2.8250 3.7603 0.9108 12 6 2.1388 -1.1671 -0.0005 13 8 3.3489 -1.1688 0.0816 14 6 1.3888 -2.4703 -0.1032 15 6 0.7156 -2.7780 1.2358 16 8 0.3942 -2.3682 -1.1241 17 6 2.3655 -3.5947 -0.4533 18 7 1.6366 -4.8615 -0.5525 19 6 1.0238 -5.4018 -1.7714 20 6 0.3946 -6.7161 -1.3822 21 6 -0.3128 -7.6662 -2.0820 22 6 -0.7758 -8.7995 -1.4348 23 6 -0.5286 -8.9799 -0.0852 24 6 0.1794 -8.0334 0.6258 25 6 0.6495 -6.8881 -0.0198 26 6 1.4188 -5.7231 0.4577 27 8 1.8012 -5.5642 1.6005 28 1 -0.3634 0.0976 1.0231 29 1 -0.3634 0.8371 -0.5961 30 1 -0.3633 -0.9348 -0.4270 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.8208 4.0842 -3.0900 34 1 1.4743 -2.8558 2.0146 35 1 0.0198 -1.9770 1.4853 36 1 0.1735 -3.7208 1.1617 37 1 0.7501 -2.1739 -2.0020 38 1 3.1242 -3.6725 0.3254 39 1 2.8451 -3.3754 -1.4072 40 1 1.7859 -5.5629 -2.5339 41 1 0.2618 -4.7168 -2.1429 42 1 -0.5068 -7.5283 -3.1355 43 1 -1.3313 -9.5446 -1.9848 44 1 -0.8927 -9.8657 0.4140 45 1 0.3698 -8.1779 1.6790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277057813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:52 Heat of formation + Delta-G solvation = -81.022411 kcal Electronic energy + Delta-G solvation = -29083.300439 eV Core-core repulsion = 25066.070699 eV Total energy + Delta-G solvation = -4017.229740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36115 -41.28969 -39.17912 -38.19842 -37.04082 -36.64418 -34.65193 -33.65440 -32.03263 -31.69124 -30.30584 -28.22995 -27.67391 -27.45457 -25.54616 -24.15621 -22.64660 -22.54300 -20.94892 -20.56951 -19.16082 -18.90490 -17.95429 -17.79779 -17.52423 -17.12182 -16.75066 -16.50294 -16.20728 -16.03748 -15.64012 -15.40509 -15.14206 -14.97066 -14.57290 -14.47668 -14.37069 -14.01349 -13.82997 -13.71954 -13.62073 -13.41848 -13.27101 -13.22481 -13.08140 -13.02759 -12.71042 -12.62842 -12.47883 -12.08187 -11.98420 -11.77362 -11.61268 -11.00780 -10.84714 -10.60028 -10.06883 -9.86656 -9.57652 -9.43313 -8.35939 -6.40301 -0.19197 0.37743 1.31327 1.34581 1.42692 1.48724 1.57495 1.76612 2.26785 2.29142 2.84445 2.95733 2.98423 3.10975 3.38011 3.43736 3.57405 3.69463 3.95431 4.21022 4.27487 4.38692 4.43004 4.50284 4.51547 4.55734 4.58723 4.62489 4.65266 4.68216 4.76859 4.82088 4.90881 5.00033 5.02610 5.14509 5.17164 5.41127 5.42281 5.48433 5.54625 5.56773 5.89051 5.95928 6.19146 6.35516 6.59570 6.62320 6.99993 7.14275 7.28088 8.80163 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.002719 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.758527 B =10294.255701 C =10600.870901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.587 5.587 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.016 3.984 7 N -0.940 5.940 8 Si 0.941 3.059 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.244 1.244 12 C 0.481 3.519 13 O -0.584 6.584 14 C 0.127 3.873 15 C -0.125 4.125 16 O -0.527 6.527 17 C 0.133 3.867 18 N -0.600 5.600 19 C 0.134 3.866 20 C -0.079 4.079 21 C -0.102 4.102 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.064 4.064 25 C -0.190 4.190 26 C 0.545 3.455 27 O -0.571 6.571 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.045 0.955 32 H 0.018 0.982 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 -24.985 1.054 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.317 5.317 3 C 0.095 3.905 4 C -0.571 4.571 5 H 0.057 0.943 6 C -0.183 4.183 7 N -0.580 5.580 8 Si 0.764 3.236 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.167 1.167 12 C 0.267 3.733 13 O -0.465 6.465 14 C 0.082 3.918 15 C -0.182 4.182 16 O -0.336 6.336 17 C 0.010 3.990 18 N -0.330 5.330 19 C 0.013 3.987 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.083 4.083 25 C -0.194 4.194 26 C 0.336 3.664 27 O -0.452 6.452 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.175 0.825 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.723 -24.737 2.065 27.894 hybrid contribution 1.275 1.317 0.093 1.836 sum -11.448 -23.420 2.159 26.158 Atomic orbital electron populations 1.22631 0.77567 1.06724 1.02224 1.47862 1.08495 1.05549 1.69794 1.19424 0.92683 0.82479 0.95905 1.21473 1.36679 1.06868 0.92039 0.94273 1.25740 0.95375 0.98859 0.98307 1.70015 1.42637 1.24456 1.20918 0.85818 0.79539 0.78115 0.80142 1.20218 1.19907 1.16732 1.21658 0.87728 0.86899 0.76988 1.90664 1.16047 1.87893 1.51889 1.21517 0.88894 0.89589 0.91844 1.21696 1.01036 1.03049 0.92442 1.86383 1.33779 1.92867 1.20562 1.21588 0.92473 0.80290 1.04618 1.47785 1.54699 1.19401 1.11130 1.20829 0.98894 0.92243 0.86768 1.20655 0.97530 0.96195 0.93603 1.20726 0.97126 0.92558 1.01620 1.21813 0.96587 0.96985 0.94328 1.21463 0.98536 0.99454 0.95194 1.21045 0.95227 0.91600 1.00435 1.20393 1.04937 0.97099 0.96937 1.18891 0.79279 0.83882 0.84391 1.90746 1.55011 1.79040 1.20390 0.92146 0.92012 0.85237 0.93658 0.96352 0.92219 0.92094 0.90062 0.91213 0.75378 0.90165 0.87613 0.86552 0.86116 0.82059 0.81535 0.82527 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.54 9.02 127.77 1.15 2.69 16 2 N -0.59 -23.90 2.86 -851.12 -2.43 -26.33 16 3 C 0.22 10.65 4.29 85.63 0.37 11.01 16 4 C -0.53 -30.53 9.94 25.60 0.25 -30.27 16 5 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 6 C 0.02 0.92 5.47 84.66 0.46 1.38 16 7 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 8 Si 0.94 44.41 27.47 68.60 1.88 46.29 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 12 C 0.48 19.17 6.63 87.66 0.58 19.75 16 13 O -0.58 -28.44 15.55 -3.04 -0.05 -28.49 16 14 C 0.13 3.71 0.72 -11.54 -0.01 3.70 16 15 C -0.12 -3.61 7.66 71.98 0.55 -3.06 16 16 O -0.53 -12.16 8.88 -148.98 -1.32 -13.48 16 17 C 0.13 3.75 4.63 86.38 0.40 4.15 16 18 N -0.60 -14.43 2.59 -829.48 -2.15 -16.58 16 19 C 0.13 2.08 7.22 85.63 0.62 2.70 16 20 C -0.08 -1.25 6.37 -19.64 -0.13 -1.38 16 21 C -0.10 -1.00 10.03 22.17 0.22 -0.78 16 22 C -0.08 -0.64 10.05 22.36 0.22 -0.41 16 23 C -0.13 -1.43 10.02 22.24 0.22 -1.20 16 24 C -0.06 -1.17 10.10 22.53 0.23 -0.94 16 25 C -0.19 -4.23 6.26 -20.14 -0.13 -4.36 16 26 C 0.54 15.67 6.41 86.74 0.56 16.23 16 27 O -0.57 -20.87 16.78 -3.87 -0.06 -20.94 16 28 H 0.06 1.62 7.75 -2.38 -0.02 1.60 16 29 H 0.06 2.00 8.11 -2.38 -0.02 1.98 16 30 H 0.13 3.45 4.10 1.66 0.01 3.46 16 31 H 0.05 2.08 7.13 -2.39 -0.02 2.07 16 32 H 0.02 0.97 6.79 -2.39 -0.02 0.96 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.13 6.22 -2.39 -0.01 2.12 16 36 H 0.07 2.01 6.20 -2.38 -0.01 1.99 16 37 H 0.39 7.52 9.04 -62.80 -0.57 6.95 16 38 H 0.08 2.72 7.81 -2.39 -0.02 2.70 16 39 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.51 7.51 -2.39 -0.02 1.49 16 42 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 43 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 44 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -82.09 367.37 2.17 -79.92 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.42 Total: 18.24 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 5.58 Total: 19.20 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.28 Total: -100.75 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -1.44 Total: -62.91 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -82.09 2.17 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277057813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.098 kcal (2) G-P(sol) polarization free energy of solvation -82.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds