Wall clock time and date at job start Tue Mar 31 2020 17:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99899 * 2 1 4 4 C 1.53002 * 109.46980 * 125.00314 * 3 2 1 5 5 H 1.09005 * 109.46936 * 304.99811 * 4 3 2 6 6 C 1.52996 * 109.47216 * 185.00252 * 4 3 2 7 7 C 1.53004 * 109.47176 * 174.99803 * 6 4 3 8 8 N 1.46501 * 109.47146 * 65.00174 * 4 3 2 9 9 C 1.34774 * 119.99744 * 205.00310 * 8 4 3 10 10 O 1.21360 * 120.00613 * 359.97438 * 9 8 4 11 11 C 1.49357 * 119.99746 * 179.97438 * 9 8 4 12 12 O 1.21370 * 119.99936 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99746 * 179.97438 * 11 9 8 14 14 C 1.39728 * 119.99770 * 175.49576 * 13 11 9 15 15 C 1.39024 * 120.03935 * 214.86180 * 14 13 11 16 16 C 1.38139 * 120.05786 * 179.74440 * 15 14 13 17 17 C 1.38183 * 120.14639 * 0.54975 * 16 15 14 18 18 C 1.38923 * 120.07882 * 359.70588 * 17 16 15 19 19 O 1.35750 * 120.02543 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00430 * 5.36578 * 19 18 17 21 21 H 1.08001 * 120.00089 * 354.96153 * 20 19 18 22 22 C 1.38653 * 120.00145 * 174.96628 * 20 19 18 23 23 N 1.31557 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00240 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46758 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47088 * 119.99554 * 24 22 20 27 27 H 1.48500 * 109.47083 * 240.00000 * 24 22 20 28 28 C 1.38752 * 119.93909 * 0.02562 * 18 17 16 29 29 H 1.07996 * 119.99605 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00265 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47252 * 5.00794 * 3 2 1 33 33 H 1.08996 * 109.47187 * 245.00339 * 3 2 1 34 34 H 1.08997 * 109.47302 * 54.99789 * 6 4 3 35 35 H 1.08997 * 109.47028 * 294.99746 * 6 4 3 36 36 H 1.08997 * 109.46763 * 60.00299 * 7 6 4 37 37 H 1.08997 * 109.47096 * 299.99902 * 7 6 4 38 38 H 1.08998 * 109.46877 * 179.97438 * 7 6 4 39 39 H 0.96994 * 119.99756 * 24.99491 * 8 4 3 40 40 H 0.96992 * 120.00282 * 355.49335 * 13 11 9 41 41 H 1.07998 * 119.96851 * 359.97438 * 15 14 13 42 42 H 1.08005 * 119.93049 * 180.27450 * 16 15 14 43 43 H 1.07995 * 119.96018 * 179.72237 * 17 16 15 44 44 H 0.97001 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.08009 * 120.07124 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7092 2.7045 1.2553 7 6 4.5857 2.7754 2.5074 8 7 4.0548 0.2969 1.0000 9 6 4.6913 -0.2171 2.0710 10 8 4.4202 0.1786 3.1858 11 6 5.7304 -1.2739 1.8860 12 8 6.0012 -1.6700 0.7711 13 7 6.3673 -1.7875 2.9569 14 6 7.2706 -2.8410 2.7936 15 6 7.3795 -3.8224 3.7723 16 6 8.2686 -4.8669 3.6088 17 6 9.0602 -4.9339 2.4782 18 6 8.9600 -3.9536 1.4990 19 8 9.7387 -4.0202 0.3890 20 6 10.5066 -5.1190 0.2449 21 1 10.5457 -5.8575 1.0320 22 6 11.2461 -5.3009 -0.9138 23 7 11.1981 -4.4016 -1.8728 24 14 12.3106 -6.8230 -1.1132 25 1 12.1905 -7.6732 0.0985 26 1 11.8597 -7.5900 -2.3021 27 1 13.7272 -6.4160 -1.2946 28 6 8.0642 -2.9059 1.6571 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 2.9468 3.4821 1.3011 35 1 4.3275 2.8535 0.3701 36 1 5.3482 1.9978 2.4615 37 1 3.9675 2.6264 3.3926 38 1 5.0663 3.7523 2.5596 39 1 4.2716 -0.0192 0.1091 40 1 6.1987 -1.4259 3.8410 41 1 6.7658 -3.7700 4.6595 42 1 8.3483 -5.6306 4.3684 43 1 9.7575 -5.7494 2.3556 44 1 11.7152 -4.5290 -2.6835 45 1 7.9842 -2.1428 0.8969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281387094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:45 Heat of formation + Delta-G solvation = -50.519872 kcal Electronic energy + Delta-G solvation = -27688.578630 eV Core-core repulsion = 23672.671580 eV Total energy + Delta-G solvation = -4015.907051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.01083 -39.56135 -38.49285 -37.12662 -36.61133 -34.43042 -33.94550 -32.54699 -32.26532 -29.68322 -29.13545 -28.62257 -25.56087 -25.03248 -24.02020 -22.28817 -21.46516 -20.98349 -20.29906 -20.04024 -18.72109 -18.08579 -17.08034 -17.05399 -16.30253 -15.79375 -15.57674 -15.25926 -15.10252 -14.85778 -14.37985 -14.23936 -14.05854 -13.86862 -13.60448 -13.57130 -13.29190 -12.90460 -12.78360 -12.55820 -12.05848 -11.93136 -11.81144 -11.68379 -11.61384 -11.53542 -11.23662 -11.12976 -11.05930 -11.01880 -10.77636 -10.44561 -9.85916 -9.72287 -9.64363 -9.33412 -9.19767 -8.84153 -7.79640 -7.23347 -6.44274 -4.03393 1.27402 1.94468 2.09424 2.30153 2.37066 3.12417 3.14151 3.19955 3.24695 3.58481 3.97277 4.27672 4.40960 4.53798 4.56840 4.68050 4.86623 4.94201 5.08752 5.10003 5.24958 5.28538 5.34937 5.49506 5.59022 5.59532 5.67544 5.76025 5.79183 5.87477 6.03523 6.09326 6.13449 6.20811 6.30833 6.30849 6.41440 6.55693 6.68767 6.95784 7.00417 7.05397 7.31517 7.42033 7.47739 7.67181 7.77575 8.00217 8.07827 9.00762 9.70957 10.73566 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.002455 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.266154 B =11404.340214 C =12070.846650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C -0.103 4.103 4 C 0.148 3.852 5 H 0.094 0.906 6 C -0.136 4.136 7 C -0.148 4.148 8 N -0.694 5.694 9 C 0.514 3.486 10 O -0.516 6.516 11 C 0.496 3.504 12 O -0.490 6.490 13 N -0.637 5.637 14 C 0.168 3.832 15 C -0.229 4.229 16 C -0.058 4.058 17 C -0.241 4.241 18 C 0.166 3.834 19 O -0.173 6.173 20 C -0.392 4.392 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.185 4.185 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.414 0.586 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.270 0.730 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 10.964 6.804 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.174 4.174 3 C -0.140 4.140 4 C 0.044 3.956 5 H 0.112 0.888 6 C -0.174 4.174 7 C -0.205 4.205 8 N -0.348 5.348 9 C 0.295 3.705 10 O -0.392 6.392 11 C 0.277 3.723 12 O -0.363 6.363 13 N -0.283 5.283 14 C 0.075 3.925 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.261 4.261 18 C 0.111 3.889 19 O -0.076 6.076 20 C -0.468 4.468 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.206 4.206 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.250 0.750 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.080 0.920 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.974 11.193 6.353 21.301 hybrid contribution 0.530 -0.841 -0.080 0.997 sum -16.445 10.351 6.272 20.418 Atomic orbital electron populations 1.23862 0.95871 1.01917 1.01155 1.22943 0.96124 0.98471 0.99829 1.21098 0.98037 0.96497 0.98385 1.21173 0.87815 0.86948 0.99713 0.88757 1.21998 0.99870 0.95945 0.99636 1.21821 1.00070 1.01154 0.97445 1.45829 1.39158 1.39727 1.10116 1.20020 0.82573 0.82599 0.85311 1.90760 1.64328 1.60184 1.23943 1.20185 0.82942 0.83635 0.85508 1.90862 1.63212 1.58630 1.23590 1.42999 1.40703 1.33802 1.10829 1.17179 0.90814 0.88306 0.96228 1.20306 1.06489 0.97296 1.00936 1.20521 0.94436 0.96299 0.96427 1.21223 1.05746 1.02917 0.96227 1.19103 0.89423 0.92749 0.87628 1.83986 1.48029 1.40678 1.34865 1.21400 1.23033 0.98477 1.03867 0.88887 1.25310 0.97837 0.98972 0.94430 1.70061 1.39127 1.33758 1.06488 0.85637 0.79076 0.79820 0.78816 1.19063 1.20138 1.20147 1.20149 0.98585 1.01801 1.00049 0.88427 0.88573 0.87103 0.89571 0.89935 0.90793 0.91413 0.92591 0.92019 0.93266 0.74955 0.74560 0.87088 0.86828 0.85308 0.92043 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 14.32 29.01 0.42 -0.92 16 2 C -0.16 -1.19 9.25 -36.03 -0.33 -1.52 16 3 C -0.10 -0.65 5.20 -27.88 -0.15 -0.80 16 4 C 0.15 1.20 2.24 -67.93 -0.15 1.05 16 5 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 6 C -0.14 -1.04 5.61 -26.73 -0.15 -1.19 16 7 C -0.15 -1.43 8.51 37.16 0.32 -1.11 16 8 N -0.69 -7.05 4.72 -54.27 -0.26 -7.30 16 9 C 0.51 6.56 6.46 -11.63 -0.08 6.48 16 10 O -0.52 -6.97 13.62 5.49 0.07 -6.90 16 11 C 0.50 7.74 7.73 -11.63 -0.09 7.65 16 12 O -0.49 -9.19 13.91 5.48 0.08 -9.11 16 13 N -0.64 -9.78 5.32 -10.31 -0.05 -9.84 16 14 C 0.17 3.13 6.29 -83.77 -0.53 2.60 16 15 C -0.23 -3.92 9.97 -39.33 -0.39 -4.32 16 16 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 17 C -0.24 -5.23 9.17 -39.35 -0.36 -5.59 16 18 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 19 O -0.17 -5.02 9.75 0.06 0.00 -5.02 16 20 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 21 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16 24 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 C -0.18 -4.17 8.64 -39.19 -0.34 -4.50 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 31 H 0.11 0.96 8.03 -52.49 -0.42 0.54 16 32 H 0.09 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 5.64 -51.93 -0.29 0.36 16 37 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.41 4.04 8.07 -40.82 -0.33 3.71 16 40 H 0.42 5.26 8.30 -40.82 -0.34 4.92 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 3.18 6.23 -52.48 -0.33 2.86 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -32.68 380.11 -6.98 -39.66 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.99 Total: 11.44 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.29 Total: -9.50 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.45 Total: -41.83 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.15 Total: -21.03 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.68 -6.98 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281387094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.860 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds