Wall clock time and date at job start Tue Mar 31 2020 17:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99899 * 2 1 4 4 C 1.53002 * 109.46980 * 125.00314 * 3 2 1 5 5 H 1.09005 * 109.46936 * 304.99811 * 4 3 2 6 6 C 1.52996 * 109.47216 * 185.00252 * 4 3 2 7 7 C 1.53004 * 109.47176 * 174.99803 * 6 4 3 8 8 N 1.46501 * 109.47146 * 65.00174 * 4 3 2 9 9 C 1.34774 * 119.99744 * 205.00310 * 8 4 3 10 10 O 1.21360 * 120.00613 * 359.97438 * 9 8 4 11 11 C 1.49357 * 119.99746 * 179.97438 * 9 8 4 12 12 O 1.21370 * 119.99936 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99746 * 179.97438 * 11 9 8 14 14 C 1.39728 * 119.99770 * 175.49576 * 13 11 9 15 15 C 1.39024 * 120.03935 * 214.86180 * 14 13 11 16 16 C 1.38139 * 120.05786 * 179.74440 * 15 14 13 17 17 C 1.38183 * 120.14639 * 0.54975 * 16 15 14 18 18 C 1.38923 * 120.07882 * 359.70588 * 17 16 15 19 19 O 1.35750 * 120.02543 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00430 * 5.36578 * 19 18 17 21 21 H 1.08001 * 120.00089 * 354.96153 * 20 19 18 22 22 C 1.38653 * 120.00145 * 174.96628 * 20 19 18 23 23 N 1.31557 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00240 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46758 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47088 * 119.99554 * 24 22 20 27 27 H 1.48500 * 109.47083 * 240.00000 * 24 22 20 28 28 C 1.38752 * 119.93909 * 0.02562 * 18 17 16 29 29 H 1.07996 * 119.99605 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00265 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47252 * 5.00794 * 3 2 1 33 33 H 1.08996 * 109.47187 * 245.00339 * 3 2 1 34 34 H 1.08997 * 109.47302 * 54.99789 * 6 4 3 35 35 H 1.08997 * 109.47028 * 294.99746 * 6 4 3 36 36 H 1.08997 * 109.46763 * 60.00299 * 7 6 4 37 37 H 1.08997 * 109.47096 * 299.99902 * 7 6 4 38 38 H 1.08998 * 109.46877 * 179.97438 * 7 6 4 39 39 H 0.96994 * 119.99756 * 24.99491 * 8 4 3 40 40 H 0.96992 * 120.00282 * 355.49335 * 13 11 9 41 41 H 1.07998 * 119.96851 * 359.97438 * 15 14 13 42 42 H 1.08005 * 119.93049 * 180.27450 * 16 15 14 43 43 H 1.07995 * 119.96018 * 179.72237 * 17 16 15 44 44 H 0.97001 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.08009 * 120.07124 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7092 2.7045 1.2553 7 6 4.5857 2.7754 2.5074 8 7 4.0548 0.2969 1.0000 9 6 4.6913 -0.2171 2.0710 10 8 4.4202 0.1786 3.1858 11 6 5.7304 -1.2739 1.8860 12 8 6.0012 -1.6700 0.7711 13 7 6.3673 -1.7875 2.9569 14 6 7.2706 -2.8410 2.7936 15 6 7.3795 -3.8224 3.7723 16 6 8.2686 -4.8669 3.6088 17 6 9.0602 -4.9339 2.4782 18 6 8.9600 -3.9536 1.4990 19 8 9.7387 -4.0202 0.3890 20 6 10.5066 -5.1190 0.2449 21 1 10.5457 -5.8575 1.0320 22 6 11.2461 -5.3009 -0.9138 23 7 11.1981 -4.4016 -1.8728 24 14 12.3106 -6.8230 -1.1132 25 1 12.1905 -7.6732 0.0985 26 1 11.8597 -7.5900 -2.3021 27 1 13.7272 -6.4160 -1.2946 28 6 8.0642 -2.9059 1.6571 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 2.9468 3.4821 1.3011 35 1 4.3275 2.8535 0.3701 36 1 5.3482 1.9978 2.4615 37 1 3.9675 2.6264 3.3926 38 1 5.0663 3.7523 2.5596 39 1 4.2716 -0.0192 0.1091 40 1 6.1987 -1.4259 3.8410 41 1 6.7658 -3.7700 4.6595 42 1 8.3483 -5.6306 4.3684 43 1 9.7575 -5.7494 2.3556 44 1 11.7152 -4.5290 -2.6835 45 1 7.9842 -2.1428 0.8969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281387094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:44 Heat of formation + Delta-G solvation = -73.139252 kcal Electronic energy + Delta-G solvation = -27689.559480 eV Core-core repulsion = 23672.671580 eV Total energy + Delta-G solvation = -4016.887901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.21947 -40.93284 -40.02756 -38.27857 -37.96203 -35.75590 -34.75008 -34.26311 -33.38256 -31.32001 -30.29676 -29.76617 -27.40946 -26.34402 -24.77726 -23.74324 -23.03618 -21.87387 -21.50202 -20.61119 -20.16873 -19.65903 -18.82949 -18.11448 -17.36891 -17.08659 -16.81948 -16.75344 -16.14279 -16.08531 -15.87259 -15.77903 -15.48087 -15.13714 -14.68850 -14.57320 -14.33746 -14.29867 -14.07892 -13.61771 -13.45834 -13.25365 -13.15799 -12.74223 -12.73120 -12.68680 -12.44307 -12.34556 -12.31517 -12.08413 -11.85835 -11.72987 -11.41741 -11.29607 -10.78874 -10.66839 -10.36131 -10.10011 -9.43129 -8.94749 -8.46725 -6.16027 -0.01239 0.60988 0.68968 1.19153 1.35795 1.39045 1.44660 1.54914 2.03707 2.17377 2.50458 2.80647 3.14993 3.24840 3.55199 3.69298 3.92178 4.08129 4.10746 4.24813 4.33022 4.33539 4.36777 4.49263 4.58275 4.59909 4.68909 4.77286 4.88998 4.95219 5.00046 5.02423 5.09565 5.10651 5.15882 5.24849 5.33937 5.35494 5.44174 5.60150 5.70394 5.75114 5.81650 5.90454 6.02650 6.12336 6.26424 6.67343 6.85121 6.97235 7.78215 8.76999 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.002455 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.266154 B =11404.340214 C =12070.846650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C -0.094 4.094 4 C 0.148 3.852 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.148 4.148 8 N -0.683 5.683 9 C 0.523 3.477 10 O -0.522 6.522 11 C 0.494 3.506 12 O -0.526 6.526 13 N -0.627 5.627 14 C 0.174 3.826 15 C -0.200 4.200 16 C -0.047 4.047 17 C -0.249 4.249 18 C 0.128 3.872 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.107 0.893 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.247 1.247 26 H -0.270 1.270 27 H -0.268 1.268 28 C -0.207 4.207 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.415 0.585 40 H 0.434 0.566 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.126 0.874 44 H 0.272 0.728 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.081 10.769 9.434 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.191 4.191 3 C -0.132 4.132 4 C 0.045 3.955 5 H 0.105 0.895 6 C -0.170 4.170 7 C -0.205 4.205 8 N -0.336 5.336 9 C 0.303 3.697 10 O -0.399 6.399 11 C 0.276 3.724 12 O -0.401 6.401 13 N -0.275 5.275 14 C 0.080 3.920 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.269 4.269 18 C 0.076 3.924 19 O -0.138 6.138 20 C -0.489 4.489 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.170 1.170 26 H -0.195 1.195 27 H -0.193 1.193 28 C -0.229 4.229 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.274 0.726 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.144 0.856 44 H 0.081 0.919 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.054 11.035 9.051 23.807 hybrid contribution 0.870 -0.640 -0.652 1.262 sum -18.184 10.394 8.399 22.567 Atomic orbital electron populations 1.24035 0.95692 1.02763 0.99861 1.22971 0.96548 0.98497 1.01073 1.21081 0.97832 0.96572 0.97673 1.21356 0.87392 0.86432 1.00349 0.89490 1.22001 1.00238 0.96159 0.98647 1.21802 0.99709 1.00713 0.98266 1.45924 1.38702 1.39476 1.09483 1.19440 0.82247 0.82176 0.85885 1.90762 1.64586 1.60402 1.24148 1.20828 0.83041 0.83651 0.84851 1.90862 1.64352 1.59863 1.25068 1.42944 1.39745 1.33063 1.11778 1.17309 0.90089 0.89435 0.95152 1.20909 1.04950 0.94982 1.01166 1.21042 0.92573 0.97287 0.95644 1.21385 1.06585 1.02002 0.96883 1.19621 0.90246 0.94669 0.87823 1.83955 1.50370 1.41998 1.37497 1.21948 1.23325 0.98874 1.04735 0.87530 1.26680 0.99250 1.02679 0.93694 1.70220 1.41510 1.36748 1.07590 0.84482 0.76753 0.75219 0.79422 1.17012 1.19521 1.19350 1.20159 0.99973 1.01337 1.01405 0.88510 0.86874 0.88805 0.87256 0.89304 0.88173 0.91148 0.95020 0.92622 0.92465 0.74760 0.72586 0.82088 0.82036 0.85588 0.91874 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 14.32 67.77 0.97 -1.31 16 2 C -0.17 -2.43 9.25 25.64 0.24 -2.20 16 3 C -0.09 -1.00 5.20 29.85 0.16 -0.85 16 4 C 0.15 2.16 2.24 44.99 0.10 2.26 16 5 H 0.09 1.47 7.58 -2.38 -0.02 1.45 16 6 C -0.13 -1.75 5.61 30.59 0.17 -1.58 16 7 C -0.15 -2.68 8.51 71.98 0.61 -2.07 16 8 N -0.68 -13.57 4.72 -443.96 -2.09 -15.67 16 9 C 0.52 13.13 6.46 87.24 0.56 13.69 16 10 O -0.52 -13.52 13.62 -3.28 -0.04 -13.56 16 11 C 0.49 15.54 7.73 87.24 0.67 16.22 16 12 O -0.53 -20.71 13.91 -3.31 -0.05 -20.76 16 13 N -0.63 -18.56 5.32 -304.89 -1.62 -20.18 16 14 C 0.17 6.32 6.29 38.20 0.24 6.56 16 15 C -0.20 -6.03 9.97 22.44 0.22 -5.80 16 16 C -0.05 -1.52 10.03 22.23 0.22 -1.30 16 17 C -0.25 -10.73 9.17 22.42 0.21 -10.52 16 18 C 0.13 6.64 6.64 22.56 0.15 6.79 16 19 O -0.23 -14.51 9.75 -22.72 -0.22 -14.73 16 20 C -0.41 -24.44 9.49 67.92 0.64 -23.80 16 21 H 0.11 5.69 5.20 -2.91 -0.02 5.68 16 22 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 23 N -0.92 -58.10 13.67 21.61 0.30 -57.81 16 24 Si 1.02 43.31 29.55 68.60 2.03 45.34 16 25 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 C -0.21 -9.78 8.64 22.52 0.19 -9.59 16 29 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.11 0.99 7.84 -2.91 -0.02 0.96 16 31 H 0.09 1.62 8.03 -2.91 -0.02 1.60 16 32 H 0.11 0.71 7.79 -2.39 -0.02 0.69 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.03 0.72 5.64 -2.39 -0.01 0.70 16 37 H 0.05 1.06 7.85 -2.39 -0.02 1.04 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 8.18 8.07 -92.71 -0.75 7.44 16 40 H 0.43 9.91 8.30 -92.71 -0.77 9.14 16 41 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 43 H 0.13 5.42 5.63 -2.91 -0.02 5.40 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.11 5.55 6.23 -2.91 -0.02 5.53 16 Total: -1.00 -78.62 380.11 3.65 -74.98 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.48 Total: 36.93 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.83 Total: -14.54 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.42 Total: -93.65 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.31 Total: -49.05 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -78.62 3.65 -74.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281387094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.837 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds