Wall clock time and date at job start Tue Mar 31 2020 16:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47472 * 2 1 4 4 C 1.53001 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47164 * 54.99286 * 4 3 2 6 6 N 1.46502 * 109.46866 * 294.99963 * 4 3 2 7 7 C 1.34779 * 120.00004 * 154.99745 * 6 4 3 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 4 9 9 C 1.46255 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.35018 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.46960 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.10267 * 180.02562 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31515 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47198 * 89.99794 * 20 18 16 22 22 H 1.48504 * 109.46987 * 209.99932 * 20 18 16 23 23 H 1.48498 * 109.46817 * 329.99488 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 C 1.50692 * 109.47520 * 174.99799 * 4 3 2 27 27 N 1.34782 * 120.00180 * 299.99989 * 26 4 3 28 28 O 1.21279 * 120.00116 * 119.99257 * 26 4 3 29 29 H 1.08996 * 109.46647 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47158 * 300.00612 * 1 2 3 32 32 H 1.08998 * 109.47158 * 239.99388 * 2 1 3 33 33 H 1.09010 * 109.46807 * 120.00049 * 2 1 3 34 34 H 1.08998 * 109.47429 * 59.99554 * 3 2 1 35 35 H 1.08995 * 109.46679 * 299.99650 * 3 2 1 36 36 H 0.97004 * 120.00347 * 335.00113 * 6 4 3 37 37 H 1.08003 * 120.00046 * 0.02562 * 9 7 6 38 38 H 1.08003 * 119.99920 * 0.02562 * 10 9 7 39 39 H 1.08002 * 120.05214 * 359.95709 * 12 11 10 40 40 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 41 41 H 0.96993 * 119.99812 * 180.02562 * 19 18 16 42 42 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 43 43 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 44 44 H 0.97007 * 119.99356 * 0.02562 * 27 26 4 45 45 H 0.96991 * 120.00497 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2798 0.2923 1.3012 8 8 5.9782 0.2658 0.3047 9 6 5.7669 -0.2898 2.5514 10 6 6.9908 -0.8579 2.5998 11 6 7.4801 -1.4433 3.8558 12 6 8.7493 -2.0325 3.9085 13 6 9.2034 -2.5788 5.0868 14 6 8.4011 -2.5515 6.2238 15 8 8.8503 -3.0963 7.3811 16 6 10.0293 -3.7478 7.3337 17 1 10.6099 -3.7479 6.4230 18 6 10.4969 -4.4182 8.4544 19 7 9.7901 -4.4177 9.5635 20 14 12.1312 -5.3205 8.3888 21 1 13.2227 -4.3977 8.7917 22 1 12.0946 -6.4791 9.3171 23 1 12.3755 -5.8021 7.0055 24 6 7.1413 -1.9618 6.1777 25 6 6.6788 -1.4130 5.0037 26 6 4.0726 2.8577 -0.1232 27 7 3.7475 3.5962 -1.2028 28 8 4.7694 3.3323 0.7486 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 3.5014 0.8803 2.0470 37 1 5.1473 -0.2659 3.4357 38 1 7.6102 -0.8821 1.7154 39 1 9.3707 -2.0583 3.0255 40 1 10.1823 -3.0331 5.1286 41 1 10.1172 -4.8861 10.3472 42 1 6.5239 -1.9389 7.0636 43 1 5.6994 -0.9593 4.9678 44 1 3.1897 3.2167 -1.8999 45 1 4.0706 4.5073 -1.2824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286204270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:52 Heat of formation + Delta-G solvation = -76.986881 kcal Electronic energy + Delta-G solvation = -26644.051167 eV Core-core repulsion = 22626.996420 eV Total energy + Delta-G solvation = -4017.054746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.50041 -39.20656 -38.75817 -36.89231 -36.34546 -33.99209 -33.51806 -33.16225 -32.26560 -30.40368 -29.83641 -28.00800 -25.69903 -25.16909 -23.33432 -22.15227 -21.73765 -21.04923 -20.48549 -19.32425 -18.16985 -17.92527 -17.29544 -17.04864 -16.99586 -15.96240 -15.28457 -15.10560 -14.76211 -14.73698 -14.65362 -14.36656 -13.99521 -13.84971 -13.76421 -13.68032 -13.35114 -13.01004 -12.90325 -12.55613 -12.32080 -11.90675 -11.74154 -11.70056 -11.66666 -11.60602 -11.15421 -11.11075 -11.04059 -10.65562 -10.51857 -10.40313 -9.97754 -9.80268 -9.56901 -9.46647 -9.15547 -8.82638 -8.34922 -7.08104 -6.62817 -4.17662 1.11198 2.16746 2.37673 2.56863 2.94105 3.05702 3.06642 3.11216 3.33970 3.69003 3.84288 4.20094 4.40007 4.49525 4.54376 4.75422 4.89533 4.95020 5.01074 5.03364 5.07689 5.20996 5.30857 5.33857 5.39076 5.56697 5.64612 5.67196 5.70669 5.72825 5.86221 6.04332 6.15250 6.21982 6.46903 6.50021 6.52073 6.64368 6.82515 6.94695 7.00008 7.16130 7.26764 7.31119 7.52380 7.67098 7.82702 7.98886 8.35015 8.82050 9.49393 10.53910 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.001815 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.395083 B =15423.212968 C =15977.720961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C 0.130 3.870 5 H 0.115 0.885 6 N -0.711 5.711 7 C 0.565 3.435 8 O -0.558 6.558 9 C -0.278 4.278 10 C 0.038 3.962 11 C -0.197 4.197 12 C -0.035 4.035 13 C -0.242 4.242 14 C 0.167 3.833 15 O -0.163 6.163 16 C -0.393 4.393 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.853 5.853 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.200 4.200 25 C -0.043 4.043 26 C 0.503 3.497 27 N -0.857 5.857 28 O -0.527 6.527 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.404 0.596 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.274 0.726 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.399 0.601 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 9.809 -19.494 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.160 4.160 4 C 0.020 3.980 5 H 0.132 0.868 6 N -0.363 5.363 7 C 0.358 3.642 8 O -0.438 6.438 9 C -0.299 4.299 10 C 0.018 3.982 11 C -0.198 4.198 12 C -0.054 4.054 13 C -0.261 4.261 14 C 0.111 3.889 15 O -0.064 6.064 16 C -0.468 4.468 17 H 0.114 0.886 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.219 4.219 25 C -0.061 4.061 26 C 0.286 3.714 27 N -0.422 5.422 28 O -0.401 6.401 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.239 0.761 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.228 0.772 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.994 9.788 -18.999 26.694 hybrid contribution 0.419 -0.087 -0.056 0.432 sum -15.574 9.701 -19.054 26.453 Atomic orbital electron populations 1.21771 0.95387 1.02035 1.01822 1.21543 0.96045 0.95471 1.03202 1.21883 0.91495 0.98912 1.03738 1.20813 0.94933 0.91385 0.90856 0.86763 1.45486 1.18692 1.59876 1.12203 1.18385 0.80178 0.76578 0.89101 1.90759 1.56044 1.59796 1.37177 1.22364 0.99914 1.10687 0.96965 1.22271 0.93294 0.86900 0.95686 1.18462 0.97030 1.10845 0.93501 1.20988 0.93887 0.93698 0.96781 1.21098 1.02316 1.09405 0.93321 1.19615 0.92111 0.91045 0.86171 1.83905 1.36700 1.58950 1.26849 1.21470 0.94846 1.30211 1.00297 0.88559 1.25393 0.99925 0.96838 0.94349 1.70016 1.37495 1.39285 1.01750 0.85647 0.79755 0.78798 0.78924 1.19655 1.20067 1.18959 1.20148 0.95467 1.07376 0.98885 1.20885 0.97950 0.95825 0.91421 1.21270 0.79885 0.88632 0.81614 1.43870 1.56357 1.18059 1.23898 1.90778 1.36622 1.72533 1.40146 0.92747 0.92419 0.92599 0.91490 0.91121 0.90577 0.90034 0.76082 0.85825 0.85973 0.86822 0.85130 0.91632 0.86130 0.86383 0.77227 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.64 5.82 -26.73 -0.16 -0.80 16 3 C -0.12 -0.60 4.70 -26.73 -0.13 -0.73 16 4 C 0.13 1.12 2.38 -69.09 -0.16 0.96 16 5 H 0.11 1.04 7.58 -51.93 -0.39 0.65 16 6 N -0.71 -7.64 4.06 -56.38 -0.23 -7.87 16 7 C 0.56 8.32 7.57 -13.04 -0.10 8.22 16 8 O -0.56 -10.02 15.89 5.17 0.08 -9.94 16 9 C -0.28 -4.02 9.41 -37.51 -0.35 -4.37 16 10 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 11 C -0.20 -3.48 5.87 -105.03 -0.62 -4.09 16 12 C -0.04 -0.64 9.78 -39.15 -0.38 -1.03 16 13 C -0.24 -5.11 9.14 -39.47 -0.36 -5.47 16 14 C 0.17 3.90 6.66 -38.89 -0.26 3.64 16 15 O -0.16 -4.47 9.74 0.71 0.01 -4.47 16 16 C -0.39 -10.54 9.48 30.91 0.29 -10.25 16 17 H 0.10 2.38 5.18 -52.48 -0.27 2.11 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 19 N -0.85 -24.06 13.67 55.48 0.76 -23.30 16 20 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.20 -4.07 9.97 -39.47 -0.39 -4.46 16 25 C -0.04 -0.75 9.40 -39.15 -0.37 -1.11 16 26 C 0.50 5.33 7.46 -10.99 -0.08 5.24 16 27 N -0.86 -5.08 8.74 31.22 0.27 -4.80 16 28 O -0.53 -8.35 17.16 5.56 0.10 -8.25 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.43 7.75 -51.92 -0.40 0.03 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.23 7.43 -51.93 -0.39 -0.16 16 36 H 0.40 3.43 8.58 -40.82 -0.35 3.08 16 37 H 0.12 1.53 6.07 -52.48 -0.32 1.21 16 38 H 0.12 1.94 7.52 -52.48 -0.39 1.55 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 2.72 5.62 -52.49 -0.29 2.43 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 43 H 0.12 1.70 6.16 -52.49 -0.32 1.37 16 44 H 0.40 0.99 8.19 -40.82 -0.33 0.66 16 45 H 0.40 2.14 8.93 -40.82 -0.36 1.77 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -35.43 386.76 -7.28 -42.71 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.93 Total: 8.68 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.15 Total: -13.30 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.80 Total: -35.97 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.65 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.43 -7.28 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286204270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.276 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds