Wall clock time and date at job start Tue Mar 31 2020 16:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47472 * 2 1 4 4 C 1.53001 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47164 * 54.99286 * 4 3 2 6 6 N 1.46502 * 109.46866 * 294.99963 * 4 3 2 7 7 C 1.34779 * 120.00004 * 154.99745 * 6 4 3 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 4 9 9 C 1.46255 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.35018 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.46960 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.10267 * 180.02562 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31515 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47198 * 89.99794 * 20 18 16 22 22 H 1.48504 * 109.46987 * 209.99932 * 20 18 16 23 23 H 1.48498 * 109.46817 * 329.99488 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 C 1.50692 * 109.47520 * 174.99799 * 4 3 2 27 27 N 1.34782 * 120.00180 * 299.99989 * 26 4 3 28 28 O 1.21279 * 120.00116 * 119.99257 * 26 4 3 29 29 H 1.08996 * 109.46647 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47158 * 300.00612 * 1 2 3 32 32 H 1.08998 * 109.47158 * 239.99388 * 2 1 3 33 33 H 1.09010 * 109.46807 * 120.00049 * 2 1 3 34 34 H 1.08998 * 109.47429 * 59.99554 * 3 2 1 35 35 H 1.08995 * 109.46679 * 299.99650 * 3 2 1 36 36 H 0.97004 * 120.00347 * 335.00113 * 6 4 3 37 37 H 1.08003 * 120.00046 * 0.02562 * 9 7 6 38 38 H 1.08003 * 119.99920 * 0.02562 * 10 9 7 39 39 H 1.08002 * 120.05214 * 359.95709 * 12 11 10 40 40 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 41 41 H 0.96993 * 119.99812 * 180.02562 * 19 18 16 42 42 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 43 43 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 44 44 H 0.97007 * 119.99356 * 0.02562 * 27 26 4 45 45 H 0.96991 * 120.00497 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2798 0.2923 1.3012 8 8 5.9782 0.2658 0.3047 9 6 5.7669 -0.2898 2.5514 10 6 6.9908 -0.8579 2.5998 11 6 7.4801 -1.4433 3.8558 12 6 8.7493 -2.0325 3.9085 13 6 9.2034 -2.5788 5.0868 14 6 8.4011 -2.5515 6.2238 15 8 8.8503 -3.0963 7.3811 16 6 10.0293 -3.7478 7.3337 17 1 10.6099 -3.7479 6.4230 18 6 10.4969 -4.4182 8.4544 19 7 9.7901 -4.4177 9.5635 20 14 12.1312 -5.3205 8.3888 21 1 13.2227 -4.3977 8.7917 22 1 12.0946 -6.4791 9.3171 23 1 12.3755 -5.8021 7.0055 24 6 7.1413 -1.9618 6.1777 25 6 6.6788 -1.4130 5.0037 26 6 4.0726 2.8577 -0.1232 27 7 3.7475 3.5962 -1.2028 28 8 4.7694 3.3323 0.7486 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9562 -0.8900 36 1 3.5014 0.8803 2.0470 37 1 5.1473 -0.2659 3.4357 38 1 7.6102 -0.8821 1.7154 39 1 9.3707 -2.0583 3.0255 40 1 10.1823 -3.0331 5.1286 41 1 10.1172 -4.8861 10.3472 42 1 6.5239 -1.9389 7.0636 43 1 5.6994 -0.9593 4.9678 44 1 3.1897 3.2167 -1.8999 45 1 4.0706 4.5073 -1.2824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286204270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:51 Heat of formation + Delta-G solvation = -103.342793 kcal Electronic energy + Delta-G solvation = -26645.194045 eV Core-core repulsion = 22626.996420 eV Total energy + Delta-G solvation = -4018.197624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.42469 -40.83491 -39.87062 -38.49367 -37.08940 -34.78501 -34.72927 -34.24199 -33.96278 -31.97355 -30.68261 -29.33462 -27.50178 -25.83390 -24.64222 -23.71207 -22.38123 -22.15558 -21.33271 -20.69566 -19.75724 -18.88418 -18.57994 -18.38440 -17.88072 -16.84749 -16.51528 -16.34674 -16.07351 -15.74369 -15.69016 -15.64484 -15.59312 -15.27924 -14.79483 -14.65493 -14.60146 -14.18978 -14.10532 -13.60210 -13.38102 -13.31950 -13.15435 -12.78668 -12.70760 -12.57819 -12.23061 -12.21510 -12.12786 -12.00385 -11.54482 -11.29942 -11.21761 -11.11455 -11.01305 -10.66903 -10.57995 -10.07951 -9.89608 -8.68453 -8.52188 -6.18295 -0.25122 0.58211 1.12590 1.35674 1.45716 1.52941 1.58280 2.06240 2.15380 2.36886 2.71170 2.87065 3.17748 3.41920 3.63055 3.83139 3.90040 3.94143 4.03593 4.08366 4.23914 4.30978 4.35231 4.41843 4.48484 4.63977 4.65908 4.78328 4.92107 4.94120 5.01159 5.02795 5.19060 5.26528 5.28300 5.31852 5.33813 5.41668 5.51455 5.58135 5.63325 5.80944 5.88336 5.97303 6.09998 6.42649 6.53995 6.92064 7.24148 7.33299 7.69117 8.69894 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.001815 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.395083 B =15423.212968 C =15977.720961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.128 3.872 5 H 0.113 0.887 6 N -0.696 5.696 7 C 0.557 3.443 8 O -0.592 6.592 9 C -0.246 4.246 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.040 4.040 13 C -0.249 4.249 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.417 4.417 17 H 0.105 0.895 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.206 4.206 25 C -0.038 4.038 26 C 0.498 3.502 27 N -0.833 5.833 28 O -0.587 6.587 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.417 0.583 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.275 0.725 42 H 0.123 0.877 43 H 0.159 0.841 44 H 0.419 0.581 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 11.208 -22.908 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.149 4.149 4 C 0.019 3.981 5 H 0.131 0.869 6 N -0.347 5.347 7 C 0.348 3.652 8 O -0.475 6.475 9 C -0.266 4.266 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.058 4.058 13 C -0.268 4.268 14 C 0.078 3.922 15 O -0.124 6.124 16 C -0.492 4.492 17 H 0.123 0.877 18 C -0.218 4.218 19 N -0.550 5.550 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.226 4.226 25 C -0.055 4.055 26 C 0.282 3.718 27 N -0.398 5.398 28 O -0.466 6.466 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.254 0.746 37 H 0.169 0.831 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.176 0.824 44 H 0.251 0.749 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.260 11.236 -22.521 31.095 hybrid contribution 0.680 -0.177 0.487 0.855 sum -17.580 11.060 -22.034 30.280 Atomic orbital electron populations 1.21753 0.94630 1.02028 1.02459 1.21526 0.96639 0.95347 1.02680 1.21892 0.88335 0.99249 1.05436 1.21050 0.97276 0.90101 0.89654 0.86923 1.45421 1.17429 1.58172 1.13703 1.18500 0.81114 0.76922 0.88625 1.90752 1.57258 1.61193 1.38260 1.22746 0.99148 1.06962 0.97761 1.22161 0.94425 0.88952 0.94936 1.18775 0.96252 1.07994 0.94114 1.21311 0.94749 0.93057 0.96731 1.21198 1.02071 1.09727 0.93771 1.20181 0.93727 0.91975 0.86324 1.83887 1.37703 1.61922 1.28906 1.21899 0.95372 1.30946 1.01032 0.87726 1.26623 1.03893 0.97571 0.93708 1.70150 1.40110 1.41981 1.02790 0.84578 0.74711 0.77440 0.79470 1.18821 1.19498 1.17591 1.20415 0.94637 1.07212 1.00297 1.21278 0.99456 0.94796 0.90019 1.21582 0.79168 0.89339 0.81744 1.43684 1.55204 1.17970 1.22929 1.90756 1.39545 1.73845 1.42495 0.91661 0.92822 0.92431 0.91590 0.92177 0.90049 0.87183 0.74594 0.83142 0.85838 0.83834 0.85682 0.91590 0.85854 0.82357 0.74923 0.76199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.13 16 2 C -0.12 -0.88 5.82 30.59 0.18 -0.70 16 3 C -0.11 -0.67 4.70 30.59 0.14 -0.53 16 4 C 0.13 1.84 2.38 44.24 0.11 1.95 16 5 H 0.11 1.74 7.58 -2.39 -0.02 1.72 16 6 N -0.70 -12.90 4.06 -450.49 -1.83 -14.73 16 7 C 0.56 14.84 7.57 86.33 0.65 15.50 16 8 O -0.59 -20.10 15.89 -4.41 -0.07 -20.17 16 9 C -0.25 -6.19 9.41 23.61 0.22 -5.97 16 10 C 0.02 0.44 9.45 23.82 0.23 0.66 16 11 C -0.17 -5.58 5.87 -20.13 -0.12 -5.70 16 12 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 13 C -0.25 -10.68 9.14 22.34 0.20 -10.48 16 14 C 0.13 6.32 6.66 22.72 0.15 6.47 16 15 O -0.22 -12.85 9.74 -20.36 -0.20 -13.05 16 16 C -0.42 -23.72 9.48 67.93 0.64 -23.07 16 17 H 0.11 5.45 5.18 -2.91 -0.02 5.44 16 18 C -0.02 -1.07 5.49 84.85 0.47 -0.60 16 19 N -0.91 -54.82 13.67 21.62 0.30 -54.52 16 20 Si 1.02 41.96 29.55 68.60 2.03 43.99 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 24 C -0.21 -8.45 9.97 22.34 0.22 -8.23 16 25 C -0.04 -1.23 9.40 22.55 0.21 -1.02 16 26 C 0.50 9.33 7.46 87.65 0.65 9.99 16 27 N -0.83 -7.37 8.74 -173.54 -1.52 -8.88 16 28 O -0.59 -17.76 17.16 -3.03 -0.05 -17.81 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.55 7.75 -2.38 -0.02 0.54 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.08 7.43 -2.39 -0.02 0.06 16 36 H 0.42 5.60 8.58 -92.71 -0.80 4.80 16 37 H 0.15 2.95 6.07 -2.91 -0.02 2.93 16 38 H 0.12 3.62 7.52 -2.91 -0.02 3.60 16 39 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.13 5.41 5.62 -2.91 -0.02 5.40 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 43 H 0.16 3.83 6.16 -2.91 -0.02 3.81 16 44 H 0.42 0.46 8.19 -92.70 -0.76 -0.30 16 45 H 0.41 3.26 8.93 -92.71 -0.83 2.43 16 Total: -1.00 -83.57 386.76 2.24 -81.33 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -1.32 Total: 26.91 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 4.90 Total: -23.07 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.05 Total: -78.13 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.32 Total: -51.03 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -83.57 2.24 -81.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286204270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.010 kcal (2) G-P(sol) polarization free energy of solvation -83.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds