Wall clock time and date at job start Tue Mar 31 2020 17:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46987 * 2 1 4 4 H 1.09001 * 109.46893 * 304.99493 * 3 2 1 5 5 C 1.53000 * 109.46645 * 185.00059 * 3 2 1 6 6 N 1.46498 * 109.47555 * 65.00122 * 3 2 1 7 7 C 1.47317 * 126.68554 * 240.00070 * 6 3 2 8 8 C 1.51589 * 103.58852 * 179.97438 * 7 6 3 9 9 O 1.21230 * 127.15496 * 179.97438 * 8 7 6 10 10 N 1.34769 * 105.68223 * 359.74727 * 8 7 6 11 11 C 1.46503 * 124.17213 * 180.27485 * 10 8 7 12 12 C 1.50698 * 109.47020 * 270.17342 * 11 10 8 13 13 C 1.38302 * 119.92975 * 269.72808 * 12 11 10 14 14 C 1.38099 * 120.06827 * 179.72109 * 13 12 11 15 15 C 1.38882 * 119.93086 * 0.57675 * 14 13 12 16 16 O 1.35755 * 120.07198 * 179.67962 * 15 14 13 17 17 C 1.34831 * 117.00016 * 174.48355 * 16 15 14 18 18 H 1.08001 * 119.99926 * 5.05577 * 17 16 15 19 19 C 1.38654 * 119.99784 * 185.05539 * 17 16 15 20 20 N 1.31555 * 119.99661 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99845 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46964 * 90.00337 * 21 19 17 23 23 H 1.48501 * 109.46989 * 209.99725 * 21 19 17 24 24 H 1.48498 * 109.47530 * 329.99975 * 21 19 17 25 25 C 1.38879 * 119.85816 * 359.69787 * 15 14 13 26 26 C 1.38092 * 119.93481 * 0.02562 * 25 15 14 27 27 C 1.33781 * 111.64792 * 0.42963 * 10 8 7 28 28 O 1.21540 * 123.77432 * 179.80631 * 27 10 8 29 29 H 1.09003 * 109.46597 * 60.00125 * 1 2 3 30 30 H 1.08995 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46940 * 300.00670 * 1 2 3 32 32 H 1.08993 * 109.46809 * 239.99600 * 2 1 3 33 33 H 1.09003 * 109.46597 * 119.99875 * 2 1 3 34 34 H 1.09003 * 109.47043 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47013 * 299.99360 * 5 3 2 36 36 H 1.08995 * 109.47409 * 59.99771 * 5 3 2 37 37 H 1.08995 * 110.59702 * 298.50103 * 7 6 3 38 38 H 1.09000 * 110.59984 * 61.44854 * 7 6 3 39 39 H 1.08994 * 109.47349 * 30.17210 * 11 10 8 40 40 H 1.09003 * 109.47052 * 150.17424 * 11 10 8 41 41 H 1.08001 * 119.96944 * 359.97438 * 13 12 11 42 42 H 1.08001 * 120.03718 * 180.27081 * 14 13 12 43 43 H 0.97003 * 119.99623 * 179.97438 * 20 19 17 44 44 H 1.08004 * 120.03044 * 179.97438 * 25 15 14 45 45 H 1.07996 * 119.97016 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 0.8096 3.2974 1.3929 8 6 0.7473 3.5146 2.8919 9 8 0.1584 4.3959 3.4802 10 7 1.4787 2.5212 3.4346 11 6 1.6841 2.3425 4.8741 12 6 2.9116 3.1034 5.3046 13 6 4.1479 2.4835 5.2907 14 6 5.2754 3.1799 5.6791 15 6 5.1653 4.5003 6.0954 16 8 6.2710 5.1855 6.4840 17 6 6.1122 6.4943 6.7664 18 1 5.1252 6.9326 6.7583 19 6 7.2161 7.2774 7.0673 20 7 7.0611 8.5543 7.3434 21 14 8.9233 6.5193 7.0806 22 1 9.5246 6.6300 5.7274 23 1 9.7762 7.2376 8.0614 24 1 8.8264 5.0879 7.4638 25 6 3.9217 5.1181 6.1135 26 6 2.7987 4.4182 5.7185 27 6 1.9966 1.7204 2.4964 28 8 2.6955 0.7567 2.7413 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9282 2.4719 -0.1262 35 1 3.9994 0.9053 0.7161 36 1 3.8532 0.9569 -1.0570 37 1 1.2734 4.1520 0.9005 38 1 -0.1868 3.1157 0.9901 39 1 0.8155 2.7185 5.4146 40 1 1.8178 1.2832 5.0933 41 1 4.2322 1.4551 4.9720 42 1 6.2412 2.6966 5.6640 43 1 7.8334 9.1021 7.5543 44 1 3.8328 6.1447 6.4371 45 1 1.8314 4.8982 5.7320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288184084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:58 Heat of formation + Delta-G solvation = -61.998943 kcal Electronic energy + Delta-G solvation = -28731.024988 eV Core-core repulsion = 24714.620168 eV Total energy + Delta-G solvation = -4016.404820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32644 -40.97433 -39.76178 -38.75514 -37.63947 -36.87173 -34.73505 -34.31991 -31.98333 -31.76584 -30.82771 -28.46499 -27.94603 -26.56855 -24.86267 -23.94983 -23.43680 -23.05348 -22.02200 -20.29956 -19.87959 -19.22459 -18.43475 -18.19982 -17.43445 -16.78248 -16.71297 -16.41032 -16.24516 -15.85445 -15.73732 -15.50589 -15.30231 -15.11181 -14.87180 -14.48110 -14.47604 -14.39808 -14.24254 -14.14597 -13.89044 -13.23890 -13.13351 -13.12390 -12.85330 -12.77645 -12.61900 -12.48034 -12.29845 -12.00475 -11.97425 -11.90136 -11.49054 -11.35781 -11.05383 -10.94998 -10.80414 -9.91989 -9.88047 -9.17217 -8.54587 -6.28167 0.35218 0.46823 0.69251 1.24458 1.29054 1.34130 1.49683 2.01530 2.08709 2.24719 2.70792 2.96107 3.07334 3.12845 3.63434 3.84768 3.86664 4.03968 4.05771 4.12472 4.21546 4.32074 4.33980 4.38814 4.46519 4.52032 4.57665 4.65826 4.68618 4.69422 4.76901 4.86693 4.93196 5.06698 5.13855 5.18825 5.26705 5.30241 5.35533 5.46771 5.49044 5.62608 5.64928 5.71773 5.82356 6.12474 6.22325 6.41471 6.78969 7.13260 7.50432 8.56860 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.002881 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.232130 B = 9717.936746 C =10225.859701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.178 3.822 4 H 0.134 0.866 5 C -0.170 4.170 6 N -0.615 5.615 7 C 0.070 3.930 8 C 0.514 3.486 9 O -0.502 6.502 10 N -0.576 5.576 11 C 0.176 3.824 12 C -0.186 4.186 13 C -0.042 4.042 14 C -0.194 4.194 15 C 0.134 3.866 16 O -0.240 6.240 17 C -0.403 4.403 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.238 4.238 26 C -0.048 4.048 27 C 0.695 3.305 28 O -0.568 6.568 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.286 0.714 44 H 0.111 0.889 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 -17.016 -18.839 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.078 3.922 4 H 0.152 0.848 5 C -0.228 4.228 6 N -0.354 5.354 7 C -0.055 4.055 8 C 0.303 3.697 9 O -0.375 6.375 10 N -0.321 5.321 11 C 0.056 3.944 12 C -0.188 4.188 13 C -0.060 4.060 14 C -0.213 4.213 15 C 0.084 3.916 16 O -0.147 6.147 17 C -0.479 4.479 18 H 0.099 0.901 19 C -0.186 4.186 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.190 1.190 24 H -0.187 1.187 25 C -0.257 4.257 26 C -0.066 4.066 27 C 0.397 3.603 28 O -0.444 6.444 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.400 -17.003 -18.366 28.875 hybrid contribution 0.815 0.608 0.780 1.281 sum -13.585 -16.395 -17.586 27.616 Atomic orbital electron populations 1.21709 0.94667 1.01921 1.01946 1.21958 0.97034 0.95600 1.03165 1.21264 0.95017 0.93543 0.82328 0.84815 1.22209 0.95201 1.02282 1.03063 1.47990 1.52670 1.29720 1.04973 1.22733 1.00381 0.90606 0.91748 1.21521 0.76542 0.79753 0.91889 1.90804 1.43097 1.32966 1.70583 1.46723 1.47832 1.28496 1.09056 1.20371 0.95877 1.01632 0.76532 1.19820 0.95582 0.94989 1.08366 1.20890 0.90599 0.99514 0.95005 1.20480 1.00540 0.92071 1.08239 1.19648 0.86553 0.92517 0.92886 1.83524 1.31733 1.22945 1.76457 1.20720 0.96825 0.81645 1.48721 0.90126 1.25291 1.03189 0.94895 0.95256 1.69727 1.33593 1.06153 1.46546 0.85221 0.77410 0.79086 0.79028 1.18983 1.18957 1.18730 1.21248 0.93026 1.01431 1.10035 1.20889 0.97285 0.93625 0.94849 1.16076 0.80022 0.82298 0.81870 1.90907 1.41191 1.29161 1.83184 0.90613 0.92766 0.94168 0.88696 0.93242 0.92736 0.93956 0.88864 0.83996 0.82527 0.87369 0.87174 0.83971 0.85237 0.90410 0.87141 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.80 71.98 0.71 -0.63 16 2 C -0.14 -1.60 5.39 30.60 0.16 -1.44 16 3 C 0.18 1.98 2.97 44.99 0.13 2.11 16 4 H 0.13 0.53 8.12 -2.39 -0.02 0.51 16 5 C -0.17 -2.44 9.23 71.98 0.66 -1.78 16 6 N -0.61 -9.65 2.34 -817.74 -1.91 -11.56 16 7 C 0.07 0.83 7.65 85.76 0.66 1.48 16 8 C 0.51 11.22 8.32 87.94 0.73 11.95 16 9 O -0.50 -14.09 17.76 -2.87 -0.05 -14.14 16 10 N -0.58 -13.79 2.59 -777.23 -2.01 -15.80 16 11 C 0.18 4.42 5.82 85.63 0.50 4.92 16 12 C -0.19 -6.04 5.47 -19.83 -0.11 -6.15 16 13 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 14 C -0.19 -7.85 9.99 22.39 0.22 -7.63 16 15 C 0.13 6.46 6.65 22.58 0.15 6.61 16 16 O -0.24 -13.28 8.59 -22.81 -0.20 -13.48 16 17 C -0.40 -24.12 9.95 67.92 0.68 -23.44 16 18 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 19 C 0.01 0.74 5.49 84.83 0.47 1.20 16 20 N -0.92 -55.35 13.96 21.61 0.30 -55.05 16 21 Si 0.97 45.81 28.62 68.60 1.96 47.77 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.24 -10.91 9.17 22.39 0.21 -10.71 16 26 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 27 C 0.69 16.46 7.77 179.44 1.39 17.85 16 28 O -0.57 -16.69 14.83 -3.84 -0.06 -16.74 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.47 7.75 -2.38 -0.02 0.45 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.92 6.81 -2.39 -0.02 0.91 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.91 6.96 -2.39 -0.02 0.89 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 2.45 7.95 -2.39 -0.02 2.43 16 40 H 0.11 2.50 7.80 -2.39 -0.02 2.48 16 41 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.11 5.54 5.64 -2.91 -0.02 5.53 16 45 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.53 378.98 6.03 -69.50 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 6.99 Total: -8.41 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -3.62 Total: -82.41 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.30 Total: -44.36 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.96 Total: 47.77 kcal Total: -75.53 6.03 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288184084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.499 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds