Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46497 * 109.47148 * 119.99925 * 2 1 3 5 5 C 1.34776 * 120.00133 * 84.99982 * 4 2 1 6 6 O 1.21510 * 119.99715 * 0.02562 * 5 4 2 7 7 O 1.34637 * 120.00268 * 179.97438 * 5 4 2 8 8 C 1.45197 * 117.00175 * 179.97438 * 7 5 4 9 9 C 1.53499 * 114.20538 * 150.00132 * 8 7 5 10 10 N 1.47065 * 87.98500 * 139.65530 * 9 8 7 11 11 C 1.34776 * 136.05885 * 152.83898 * 10 9 8 12 12 O 1.21584 * 119.99876 * 2.86710 * 11 10 9 13 13 C 1.47645 * 120.00123 * 182.86067 * 11 10 9 14 14 C 1.40011 * 119.89470 * 352.37847 * 13 11 10 15 15 C 1.36316 * 120.10277 * 180.27578 * 14 13 11 16 16 C 1.40885 * 119.89569 * 359.97365 * 15 14 13 17 17 C 1.41105 * 120.10328 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00275 * 154.96319 * 17 16 15 19 19 C 1.40230 * 120.00084 * 334.95839 * 17 16 15 20 20 N 1.30646 * 119.99847 * 338.04920 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 158.04912 * 19 17 16 22 22 H 1.48502 * 109.47144 * 84.92025 * 21 19 17 23 23 H 1.48495 * 109.47179 * 204.92123 * 21 19 17 24 24 H 1.48503 * 109.47000 * 324.91821 * 21 19 17 25 25 C 1.40886 * 119.79387 * 0.02562 * 16 15 14 26 26 C 1.36318 * 119.88951 * 359.97438 * 25 16 15 27 27 C 1.47068 * 87.88601 * 333.10324 * 10 9 8 28 28 H 1.08997 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46612 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.47025 * 60.00078 * 1 2 3 31 31 H 1.09001 * 109.47334 * 239.99775 * 2 1 3 32 32 H 1.08998 * 109.47494 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47036 * 299.99914 * 3 2 1 34 34 H 1.09001 * 109.47129 * 59.99650 * 3 2 1 35 35 H 0.97006 * 120.00303 * 264.99662 * 4 2 1 36 36 H 1.09001 * 113.27988 * 16.93708 * 8 7 5 37 37 H 1.09001 * 113.46394 * 24.87819 * 9 8 7 38 38 H 1.08997 * 113.52430 * 254.44388 * 9 8 7 39 39 H 1.08000 * 119.94807 * 0.24742 * 14 13 11 40 40 H 1.08002 * 120.04972 * 179.97438 * 15 14 13 41 41 H 0.96994 * 119.99692 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.05684 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.94761 * 179.97438 * 26 25 16 44 44 H 1.09005 * 113.46702 * 141.67591 * 27 10 9 45 45 H 1.08996 * 113.46594 * 272.11517 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1944 6 8 1.8585 -2.6689 0.2005 7 8 2.5963 -2.6668 2.2935 8 6 2.7092 -4.1125 2.2201 9 6 3.8215 -4.7024 3.0982 10 7 2.9001 -5.7965 3.4400 11 6 3.0208 -7.0852 3.8156 12 8 4.1235 -7.5677 3.9873 13 6 1.8139 -7.9111 4.0186 14 6 0.5468 -7.3170 3.9776 15 6 -0.5701 -8.0745 4.1700 16 6 -0.4478 -9.4574 4.4099 17 6 -1.6010 -10.2458 4.6092 18 1 -1.5758 -11.3039 4.3936 19 6 -2.7799 -9.6556 5.0871 20 7 -2.7260 -8.5267 5.7425 21 14 -4.4272 -10.4836 4.7867 22 1 -4.6722 -11.4967 5.8445 23 1 -5.5065 -9.4642 4.8181 24 1 -4.4124 -11.1480 3.4587 25 6 0.8294 -10.0507 4.4502 26 6 1.9405 -9.2851 4.2566 27 6 1.7889 -4.8674 3.1853 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2491 -0.1823 1.9895 36 1 2.6958 -4.4944 1.1993 37 1 4.0826 -4.0730 3.9490 38 1 4.6940 -5.0302 2.5332 39 1 0.4541 -6.2568 3.7936 40 1 -1.5471 -7.6153 4.1386 41 1 -3.5414 -8.1184 6.0728 42 1 0.9280 -11.1103 4.6342 43 1 2.9200 -9.7388 4.2878 44 1 0.9362 -5.3351 2.6932 45 1 1.5031 -4.2825 4.0595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288227379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = -53.522125 kcal Electronic energy + Delta-G solvation = -27505.261727 eV Core-core repulsion = 23489.224489 eV Total energy + Delta-G solvation = -4016.037238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.95028 -39.83485 -38.04503 -37.11411 -36.52266 -35.60007 -33.89933 -31.84550 -30.63599 -29.52335 -28.73958 -27.63916 -26.29873 -25.57916 -23.59295 -22.06636 -21.08731 -20.99055 -20.75036 -19.28076 -18.75918 -17.54608 -17.25189 -16.49574 -16.45918 -16.00280 -15.65002 -15.21095 -14.78140 -14.66244 -14.22170 -13.78453 -13.60693 -13.38324 -13.28442 -13.09489 -12.81700 -12.75610 -12.65501 -12.57394 -12.21819 -11.99430 -11.87762 -11.79140 -11.62969 -11.38492 -11.33331 -11.27072 -11.00594 -10.79050 -10.65780 -10.29879 -10.05722 -9.56702 -9.48794 -9.30325 -9.05794 -8.46093 -7.73519 -7.58530 -7.09498 -4.61259 1.85299 2.19762 2.62322 2.88201 2.93326 2.99815 3.02074 3.19682 3.70694 3.74716 3.98269 4.18523 4.40638 4.50637 4.61540 4.77664 4.81925 5.02424 5.15372 5.24592 5.28593 5.36884 5.44239 5.47671 5.51160 5.57356 5.58923 5.65283 5.76030 5.89460 6.08792 6.09944 6.28783 6.32467 6.39641 6.76087 6.80416 7.01114 7.10182 7.13186 7.42298 7.64354 7.77675 7.84690 8.03696 8.12205 8.18075 8.36898 8.60185 8.73284 8.93184 9.84095 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002593 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.592897 B =10796.882801 C =12782.354649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.153 3.847 3 C -0.161 4.161 4 N -0.707 5.707 5 C 0.648 3.352 6 O -0.567 6.567 7 O -0.354 6.354 8 C 0.065 3.935 9 C 0.109 3.891 10 N -0.644 5.644 11 C 0.608 3.392 12 O -0.566 6.566 13 C -0.282 4.282 14 C -0.074 4.074 15 C -0.181 4.181 16 C 0.130 3.870 17 C -0.443 4.443 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.766 5.766 21 Si 0.910 3.090 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.020 4.020 27 C 0.088 3.912 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.288 0.712 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 19.030 -7.458 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 C -0.219 4.219 4 N -0.367 5.367 5 C 0.400 3.600 6 O -0.456 6.456 7 O -0.266 6.266 8 C 0.008 3.992 9 C -0.014 4.014 10 N -0.383 5.383 11 C 0.408 3.592 12 O -0.447 6.447 13 C -0.287 4.287 14 C -0.092 4.092 15 C -0.200 4.200 16 C 0.127 3.873 17 C -0.470 4.470 18 H 0.104 0.896 19 C -0.145 4.145 20 N -0.388 5.388 21 Si 0.733 3.267 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.258 4.258 26 C -0.039 4.039 27 C -0.035 4.035 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.320 18.313 -7.622 20.111 hybrid contribution -0.805 0.031 0.449 0.923 sum 2.515 18.344 -7.172 19.856 Atomic orbital electron populations 1.22249 0.94895 1.03178 1.02346 1.20974 0.94359 0.92462 0.87218 1.22096 1.01935 0.94575 1.03272 1.44823 1.70265 1.03513 1.18130 1.18177 0.76626 0.83310 0.81868 1.91009 1.54854 1.65810 1.33886 1.86284 1.78924 1.23269 1.38151 1.24806 0.98574 0.74276 1.01578 1.23005 0.94301 0.86748 0.97374 1.48969 1.09275 1.08726 1.71324 1.18212 0.89728 0.77503 0.73766 1.90661 1.28747 1.71181 1.54150 1.18718 0.90783 0.93924 1.25232 1.21017 0.92371 0.98257 0.97576 1.20875 0.97174 0.94682 1.07313 1.17787 0.91953 0.92273 0.85281 1.19826 0.94218 0.96861 1.36107 0.89594 1.26107 1.01825 0.94510 0.92082 1.69762 1.31510 1.15917 1.21614 0.86279 0.79863 0.79963 0.80555 1.19020 1.19805 1.18059 1.20697 0.92300 0.98749 1.14029 1.20355 0.97493 0.92086 0.93968 1.23509 0.93054 0.88974 0.97997 0.91685 0.92227 0.91275 0.89018 0.91742 0.90461 0.91780 0.75925 0.85241 0.89307 0.89704 0.87860 0.86763 0.90116 0.88268 0.88080 0.88320 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.15 1.07 3.18 -67.93 -0.22 0.85 16 3 C -0.16 -0.65 9.38 37.16 0.35 -0.31 16 4 N -0.71 -5.82 5.08 -58.73 -0.30 -6.12 16 5 C 0.65 7.81 8.71 54.06 0.47 8.28 16 6 O -0.57 -8.67 15.21 -19.28 -0.29 -8.97 16 7 O -0.35 -4.20 10.33 -40.32 -0.42 -4.62 16 8 C 0.06 0.85 4.61 -26.35 -0.12 0.72 16 9 C 0.11 1.51 8.47 -8.50 -0.07 1.44 16 10 N -0.64 -11.48 3.68 -186.60 -0.69 -12.17 16 11 C 0.61 13.55 8.00 -12.42 -0.10 13.45 16 12 O -0.57 -14.00 17.12 5.29 0.09 -13.91 16 13 C -0.28 -6.64 5.89 -104.73 -0.62 -7.25 16 14 C -0.07 -1.67 9.12 -39.61 -0.36 -2.03 16 15 C -0.18 -4.48 8.65 -39.27 -0.34 -4.82 16 16 C 0.13 3.34 5.56 -106.81 -0.59 2.75 16 17 C -0.44 -11.03 9.02 -37.75 -0.34 -11.37 16 18 H 0.09 2.04 7.94 -52.48 -0.42 1.62 16 19 C 0.08 1.80 5.03 -17.31 -0.09 1.71 16 20 N -0.77 -18.36 11.24 55.56 0.62 -17.74 16 21 Si 0.91 17.21 29.61 -169.99 -5.03 12.17 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 26 C -0.02 -0.48 9.52 -39.61 -0.38 -0.85 16 27 C 0.09 1.29 6.32 -8.64 -0.05 1.24 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.78 7.58 -51.93 -0.39 0.39 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.41 2.36 8.71 -40.82 -0.36 2.01 16 36 H 0.13 1.81 7.06 -51.93 -0.37 1.45 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 2.03 3.81 -52.49 -0.20 1.83 16 40 H 0.11 2.84 6.34 -52.49 -0.33 2.51 16 41 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.10 2.33 7.65 -52.49 -0.40 1.93 16 44 H 0.10 1.50 6.15 -51.93 -0.32 1.18 16 45 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -31.23 379.15 -8.94 -40.17 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.15 Total: 8.68 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.49 Total: -3.22 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.36 Total: -36.02 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.62 Total: -27.50 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.23 -8.94 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288227379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.349 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds