Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46497 * 109.47148 * 119.99925 * 2 1 3 5 5 C 1.34776 * 120.00133 * 84.99982 * 4 2 1 6 6 O 1.21510 * 119.99715 * 0.02562 * 5 4 2 7 7 O 1.34637 * 120.00268 * 179.97438 * 5 4 2 8 8 C 1.45197 * 117.00175 * 179.97438 * 7 5 4 9 9 C 1.53499 * 114.20538 * 150.00132 * 8 7 5 10 10 N 1.47065 * 87.98500 * 139.65530 * 9 8 7 11 11 C 1.34776 * 136.05885 * 152.83898 * 10 9 8 12 12 O 1.21584 * 119.99876 * 2.86710 * 11 10 9 13 13 C 1.47645 * 120.00123 * 182.86067 * 11 10 9 14 14 C 1.40011 * 119.89470 * 352.37847 * 13 11 10 15 15 C 1.36316 * 120.10277 * 180.27578 * 14 13 11 16 16 C 1.40885 * 119.89569 * 359.97365 * 15 14 13 17 17 C 1.41105 * 120.10328 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00275 * 154.96319 * 17 16 15 19 19 C 1.40230 * 120.00084 * 334.95839 * 17 16 15 20 20 N 1.30646 * 119.99847 * 338.04920 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 158.04912 * 19 17 16 22 22 H 1.48502 * 109.47144 * 84.92025 * 21 19 17 23 23 H 1.48495 * 109.47179 * 204.92123 * 21 19 17 24 24 H 1.48503 * 109.47000 * 324.91821 * 21 19 17 25 25 C 1.40886 * 119.79387 * 0.02562 * 16 15 14 26 26 C 1.36318 * 119.88951 * 359.97438 * 25 16 15 27 27 C 1.47068 * 87.88601 * 333.10324 * 10 9 8 28 28 H 1.08997 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46612 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.47025 * 60.00078 * 1 2 3 31 31 H 1.09001 * 109.47334 * 239.99775 * 2 1 3 32 32 H 1.08998 * 109.47494 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47036 * 299.99914 * 3 2 1 34 34 H 1.09001 * 109.47129 * 59.99650 * 3 2 1 35 35 H 0.97006 * 120.00303 * 264.99662 * 4 2 1 36 36 H 1.09001 * 113.27988 * 16.93708 * 8 7 5 37 37 H 1.09001 * 113.46394 * 24.87819 * 9 8 7 38 38 H 1.08997 * 113.52430 * 254.44388 * 9 8 7 39 39 H 1.08000 * 119.94807 * 0.24742 * 14 13 11 40 40 H 1.08002 * 120.04972 * 179.97438 * 15 14 13 41 41 H 0.96994 * 119.99692 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.05684 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.94761 * 179.97438 * 26 25 16 44 44 H 1.09005 * 113.46702 * 141.67591 * 27 10 9 45 45 H 1.08996 * 113.46594 * 272.11517 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1944 6 8 1.8585 -2.6689 0.2005 7 8 2.5963 -2.6668 2.2935 8 6 2.7092 -4.1125 2.2201 9 6 3.8215 -4.7024 3.0982 10 7 2.9001 -5.7965 3.4400 11 6 3.0208 -7.0852 3.8156 12 8 4.1235 -7.5677 3.9873 13 6 1.8139 -7.9111 4.0186 14 6 0.5468 -7.3170 3.9776 15 6 -0.5701 -8.0745 4.1700 16 6 -0.4478 -9.4574 4.4099 17 6 -1.6010 -10.2458 4.6092 18 1 -1.5758 -11.3039 4.3936 19 6 -2.7799 -9.6556 5.0871 20 7 -2.7260 -8.5267 5.7425 21 14 -4.4272 -10.4836 4.7867 22 1 -4.6722 -11.4967 5.8445 23 1 -5.5065 -9.4642 4.8181 24 1 -4.4124 -11.1480 3.4587 25 6 0.8294 -10.0507 4.4502 26 6 1.9405 -9.2851 4.2566 27 6 1.7889 -4.8674 3.1853 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2491 -0.1823 1.9895 36 1 2.6958 -4.4944 1.1993 37 1 4.0826 -4.0730 3.9490 38 1 4.6940 -5.0302 2.5332 39 1 0.4541 -6.2568 3.7936 40 1 -1.5471 -7.6153 4.1386 41 1 -3.5414 -8.1184 6.0728 42 1 0.9280 -11.1103 4.6342 43 1 2.9200 -9.7388 4.2878 44 1 0.9362 -5.3351 2.6932 45 1 1.5031 -4.2825 4.0595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288227379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = -73.258197 kcal Electronic energy + Delta-G solvation = -27506.117548 eV Core-core repulsion = 23489.224489 eV Total energy + Delta-G solvation = -4016.893058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.07154 -41.09881 -39.56343 -38.64323 -37.66281 -36.60538 -35.70766 -32.66550 -32.28975 -31.39218 -30.23060 -28.08515 -27.76534 -27.09833 -24.74355 -23.40800 -22.81751 -22.21530 -21.75633 -20.46043 -19.99316 -19.37371 -18.39076 -17.90304 -17.75038 -17.22029 -16.86232 -16.71056 -15.94276 -15.77791 -15.40790 -15.21147 -15.03993 -14.78962 -14.66979 -14.42711 -14.06436 -13.89402 -13.76492 -13.65072 -13.26036 -13.18706 -13.10329 -13.04043 -12.89714 -12.76230 -12.63317 -12.36083 -12.31502 -11.94311 -11.84270 -11.81271 -11.56660 -11.20179 -11.06810 -10.78286 -10.29923 -9.92831 -9.61059 -9.45307 -8.85870 -6.50023 0.38340 0.90740 1.11839 1.36398 1.41320 1.53411 1.66160 1.85690 2.04761 2.15744 2.70575 3.01168 3.09900 3.58689 3.63797 3.83351 3.92041 3.98240 4.12820 4.17824 4.31591 4.38298 4.39452 4.43712 4.51405 4.54544 4.73043 4.77571 4.77899 4.90964 4.95602 5.00725 5.01430 5.14096 5.25435 5.26008 5.34651 5.37488 5.47254 5.56239 5.78753 5.91536 5.97123 6.18288 6.36919 6.49689 6.58962 6.72974 6.85385 7.23044 7.25746 8.11242 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002593 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.592897 B =10796.882801 C =12782.354649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.152 4.152 4 N -0.689 5.689 5 C 0.642 3.358 6 O -0.604 6.604 7 O -0.343 6.343 8 C 0.083 3.917 9 C 0.112 3.888 10 N -0.650 5.650 11 C 0.607 3.393 12 O -0.600 6.600 13 C -0.295 4.295 14 C -0.066 4.066 15 C -0.201 4.201 16 C 0.103 3.897 17 C -0.472 4.472 18 H 0.088 0.912 19 C 0.041 3.959 20 N -0.792 5.792 21 Si 0.985 3.015 22 H -0.258 1.258 23 H -0.261 1.261 24 H -0.258 1.258 25 C -0.252 4.252 26 C -0.030 4.030 27 C 0.084 3.916 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.299 0.701 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 21.526 -7.541 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C -0.210 4.210 4 N -0.350 5.350 5 C 0.394 3.606 6 O -0.495 6.495 7 O -0.255 6.255 8 C 0.025 3.975 9 C -0.010 4.010 10 N -0.387 5.387 11 C 0.405 3.595 12 O -0.484 6.484 13 C -0.300 4.300 14 C -0.085 4.085 15 C -0.220 4.220 16 C 0.099 3.901 17 C -0.498 4.498 18 H 0.106 0.894 19 C -0.180 4.180 20 N -0.415 5.415 21 Si 0.805 3.195 22 H -0.183 1.183 23 H -0.185 1.185 24 H -0.181 1.181 25 C -0.271 4.271 26 C -0.050 4.050 27 C -0.038 4.038 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.258 0.742 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.516 20.899 -7.697 22.413 hybrid contribution -0.513 -0.588 0.454 0.903 sum 2.003 20.311 -7.243 21.656 Atomic orbital electron populations 1.22227 0.94808 1.01551 1.03780 1.21150 0.94434 0.93914 0.85944 1.22054 1.02058 0.92243 1.04622 1.44899 1.68807 1.02094 1.19161 1.18451 0.76514 0.84285 0.81316 1.90995 1.56576 1.66801 1.35110 1.86278 1.78950 1.22224 1.38087 1.24343 0.97434 0.75116 1.00588 1.23227 0.94066 0.85356 0.98372 1.48821 1.12085 1.08305 1.69449 1.17905 0.88643 0.78914 0.74034 1.90629 1.29442 1.72448 1.55840 1.19017 0.91900 0.94175 1.24863 1.21282 0.91482 0.99623 0.96093 1.20910 0.97517 0.94765 1.08797 1.18145 0.92705 0.93127 0.86090 1.20106 0.95273 0.97211 1.37253 0.89421 1.26951 1.04939 0.95027 0.91058 1.69775 1.33172 1.16948 1.21606 0.85159 0.75051 0.79050 0.80261 1.18288 1.18534 1.18132 1.20847 0.92322 0.99324 1.14646 1.20513 0.97509 0.92782 0.94148 1.23706 0.92385 0.88498 0.99250 0.94742 0.91075 0.89622 0.90884 0.91484 0.89136 0.90388 0.74229 0.86132 0.86847 0.89126 0.84957 0.87345 0.88989 0.87513 0.87769 0.88988 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.48 71.98 0.68 -1.39 16 2 C 0.15 1.82 3.18 44.99 0.14 1.96 16 3 C -0.15 -0.80 9.38 71.98 0.68 -0.12 16 4 N -0.69 -10.00 5.08 -570.13 -2.90 -12.90 16 5 C 0.64 14.64 8.71 129.79 1.13 15.77 16 6 O -0.60 -18.33 15.21 19.81 0.30 -18.02 16 7 O -0.34 -7.44 10.33 -55.46 -0.57 -8.01 16 8 C 0.08 2.04 4.61 30.84 0.14 2.18 16 9 C 0.11 2.88 8.47 83.18 0.70 3.58 16 10 N -0.65 -22.48 3.68 -863.02 -3.18 -25.66 16 11 C 0.61 27.07 8.00 86.73 0.69 27.76 16 12 O -0.60 -29.90 17.12 -3.98 -0.07 -29.97 16 13 C -0.30 -14.09 5.89 -19.93 -0.12 -14.21 16 14 C -0.07 -3.04 9.12 22.25 0.20 -2.84 16 15 C -0.20 -10.13 8.65 22.47 0.19 -9.93 16 16 C 0.10 5.41 5.56 -21.28 -0.12 5.29 16 17 C -0.47 -23.96 9.02 23.46 0.21 -23.74 16 18 H 0.09 4.25 7.94 -2.91 -0.02 4.23 16 19 C 0.04 1.89 5.03 85.35 0.43 2.31 16 20 N -0.79 -38.01 11.24 21.87 0.25 -37.77 16 21 Si 0.99 34.72 29.61 68.60 2.03 36.75 16 22 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 24 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 25 C -0.25 -12.73 9.73 22.47 0.22 -12.52 16 26 C -0.03 -1.50 9.52 22.25 0.21 -1.29 16 27 C 0.08 2.33 6.32 83.09 0.52 2.86 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.20 7.58 -2.39 -0.02 1.18 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.42 3.71 8.71 -92.70 -0.81 2.90 16 36 H 0.12 3.30 7.06 -2.39 -0.02 3.28 16 37 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.13 5.11 3.81 -2.91 -0.01 5.10 16 40 H 0.11 5.50 6.34 -2.91 -0.02 5.49 16 41 H 0.30 12.67 8.29 -92.71 -0.77 11.90 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 43 H 0.10 4.97 7.65 -2.91 -0.02 4.95 16 44 H 0.09 2.70 6.15 -2.38 -0.01 2.69 16 45 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -69.24 379.15 2.01 -67.23 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.22 Total: 32.67 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.93 Total: -4.32 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -5.83 Total: -76.33 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.34 Total: -56.00 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Total: -69.24 2.01 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288227379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.029 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds