Wall clock time and date at job start Tue Mar 31 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 N 1.46499 * 109.46969 * 120.00359 * 2 1 3 5 5 C 1.34774 * 120.00418 * 155.00320 * 4 2 1 6 6 O 1.21519 * 119.99296 * 359.97438 * 5 4 2 7 7 O 1.34634 * 120.00379 * 179.97438 * 5 4 2 8 8 C 1.45203 * 117.00123 * 179.97438 * 7 5 4 9 9 C 1.53488 * 114.21033 * 149.99643 * 8 7 5 10 10 N 1.47061 * 87.98852 * 139.65158 * 9 8 7 11 11 C 1.34775 * 136.05685 * 152.84103 * 10 9 8 12 12 O 1.21549 * 120.00290 * 359.78486 * 11 10 9 13 13 C 1.47892 * 119.99885 * 179.78902 * 11 10 9 14 14 C 1.39919 * 120.02531 * 353.00297 * 13 11 10 15 15 C 1.38329 * 120.35421 * 180.28138 * 14 13 11 16 16 C 1.37753 * 120.41617 * 359.72166 * 15 14 13 17 17 C 1.40744 * 120.03727 * 359.97438 * 16 15 14 18 18 C 1.41437 * 120.17982 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00129 * 155.33400 * 18 17 16 20 20 C 1.39939 * 119.99760 * 335.33729 * 18 17 16 21 21 N 1.30826 * 119.99928 * 160.02641 * 20 18 17 22 22 Si 1.86803 * 120.00154 * 340.03146 * 20 18 17 23 23 H 1.48497 * 109.47124 * 95.34680 * 22 20 18 24 24 H 1.48494 * 109.47081 * 215.35078 * 22 20 18 25 25 H 1.48504 * 109.46987 * 335.34834 * 22 20 18 26 26 C 1.38994 * 120.02158 * 172.72652 * 13 11 10 27 27 C 1.47063 * 87.88341 * 333.10396 * 10 9 8 28 28 H 1.09001 * 109.47463 * 300.00238 * 1 2 3 29 29 H 1.08997 * 109.47422 * 60.00009 * 1 2 3 30 30 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46808 * 239.99390 * 2 1 3 32 32 H 1.09003 * 109.47151 * 299.99988 * 3 2 1 33 33 H 1.09001 * 109.47083 * 59.99529 * 3 2 1 34 34 H 1.08991 * 109.47261 * 180.02562 * 3 2 1 35 35 H 0.97005 * 119.99797 * 334.99533 * 4 2 1 36 36 H 1.09005 * 113.40919 * 16.79553 * 8 7 5 37 37 H 1.09003 * 113.46458 * 24.87222 * 9 8 7 38 38 H 1.09003 * 113.52231 * 254.44837 * 9 8 7 39 39 H 1.07997 * 119.82270 * 0.02562 * 14 13 11 40 40 H 1.08003 * 119.78831 * 179.69871 * 15 14 13 41 41 H 1.07995 * 119.98057 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99626 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.20595 * 359.97438 * 26 13 11 44 44 H 1.09009 * 113.46908 * 141.67924 * 27 10 9 45 45 H 1.08994 * 113.46900 * 272.11150 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2592 1.1944 6 8 3.9368 -1.1993 0.2005 7 8 3.6892 -1.8935 2.2939 8 6 5.0142 -2.4829 2.2201 9 6 5.7578 -2.5299 3.5620 10 7 6.2376 -3.8693 3.1901 11 6 7.3107 -4.6311 3.4811 12 8 8.1711 -4.2089 4.2286 13 6 7.4412 -5.9808 2.8908 14 6 6.3869 -6.5259 2.1499 15 6 6.4995 -7.7901 1.5996 16 6 7.6524 -8.5246 1.7697 17 6 8.7259 -7.9902 2.5065 18 6 9.9113 -8.7415 2.6825 19 1 10.8464 -8.2373 2.8764 20 6 9.8723 -10.1382 2.6055 21 7 10.9702 -10.8116 2.3759 22 14 8.2525 -11.0413 2.8302 23 1 7.6483 -11.3122 1.5010 24 1 8.4955 -12.3257 3.5347 25 1 7.3261 -10.2036 3.6336 26 6 8.6136 -6.7064 3.0669 27 6 5.0346 -4.0090 2.3558 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4424 -0.0005 35 1 1.4621 -0.7387 1.9894 36 1 5.6115 -2.1031 1.3912 37 1 5.0937 -2.5312 4.4264 38 1 6.5545 -1.7905 3.6440 39 1 5.4788 -5.9583 2.0103 40 1 5.6782 -8.2039 1.0334 41 1 7.7326 -9.5110 1.3374 42 1 10.9432 -11.7798 2.3228 43 1 9.4318 -6.2876 3.6340 44 1 5.2176 -4.5248 1.4131 45 1 4.1761 -4.4084 2.8955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288322977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:58 Heat of formation + Delta-G solvation = -47.520692 kcal Electronic energy + Delta-G solvation = -27420.901263 eV Core-core repulsion = 23405.124266 eV Total energy + Delta-G solvation = -4015.776996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10723 -40.05267 -38.28973 -37.28710 -36.74160 -35.72658 -33.75243 -31.95041 -31.03411 -30.11069 -28.84387 -27.72257 -26.52596 -25.02524 -24.03627 -22.65220 -21.32982 -21.02245 -20.70964 -19.46812 -19.08764 -17.78776 -17.23183 -16.73499 -16.22631 -16.05673 -15.98035 -15.25190 -14.91945 -14.82216 -14.56855 -14.04272 -13.81084 -13.55545 -13.46090 -13.34210 -12.93594 -12.82534 -12.75148 -12.74344 -12.66008 -12.14851 -12.05165 -11.91089 -11.77015 -11.59407 -11.44922 -11.07836 -10.90362 -10.83387 -10.59806 -10.37501 -9.92265 -9.70528 -9.63959 -9.50685 -9.15745 -8.71324 -7.88351 -7.81940 -7.06589 -4.57687 1.71661 1.87876 2.51066 2.51410 2.92871 3.02505 3.15829 3.23466 3.49821 3.83715 3.89486 4.01575 4.32650 4.43156 4.53541 4.58452 4.74023 4.83245 5.00452 5.07375 5.15956 5.28020 5.28593 5.31103 5.36589 5.38756 5.46840 5.48672 5.64792 5.78373 5.78770 5.95674 5.99265 6.08631 6.25054 6.36614 6.65563 6.67750 6.95301 7.03144 7.19195 7.39732 7.49403 7.71143 7.77488 7.94993 8.02205 8.23721 8.49787 8.54968 8.67484 9.94899 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.002177 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.718333 B =12857.957862 C =13536.145994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.707 5.707 5 C 0.648 3.352 6 O -0.567 6.567 7 O -0.353 6.353 8 C 0.065 3.935 9 C 0.109 3.891 10 N -0.640 5.640 11 C 0.601 3.399 12 O -0.539 6.539 13 C -0.101 4.101 14 C -0.233 4.233 15 C -0.080 4.080 16 C -0.228 4.228 17 C 0.082 3.918 18 C -0.436 4.436 19 H 0.094 0.906 20 C 0.082 3.918 21 N -0.797 5.797 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.243 1.243 26 C -0.139 4.139 27 C 0.089 3.911 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.288 0.712 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 17.720 -3.028 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 C -0.226 4.226 4 N -0.367 5.367 5 C 0.400 3.600 6 O -0.455 6.455 7 O -0.266 6.266 8 C 0.008 3.992 9 C -0.015 4.015 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.416 6.416 13 C -0.104 4.104 14 C -0.252 4.252 15 C -0.099 4.099 16 C -0.247 4.247 17 C 0.078 3.922 18 C -0.464 4.464 19 H 0.112 0.888 20 C -0.138 4.138 21 N -0.420 5.420 22 Si 0.743 3.257 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.166 1.166 26 C -0.159 4.159 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.408 17.568 -3.059 27.101 hybrid contribution -0.864 -0.626 0.363 1.127 sum -21.272 16.942 -2.696 27.328 Atomic orbital electron populations 1.22098 0.93492 1.03054 1.03272 1.20986 0.94040 0.92797 0.87232 1.22240 1.02459 0.95522 1.02363 1.44829 1.15449 1.58213 1.18164 1.18172 0.82684 0.77237 0.81901 1.91018 1.56882 1.63883 1.33693 1.86284 1.35323 1.66759 1.38190 1.24749 0.80265 0.93590 1.00603 1.23071 0.96657 0.85736 0.96011 1.48947 1.21165 1.18097 1.49673 1.18392 0.78248 0.84331 0.79439 1.90728 1.40060 1.73489 1.37303 1.19252 0.97098 0.91887 1.02177 1.20883 0.99039 0.97883 1.07421 1.20506 0.96601 0.94271 0.98476 1.21136 0.96326 1.00737 1.06519 1.17664 0.92482 0.92034 0.89976 1.19559 0.95302 0.91080 1.40455 0.88811 1.26227 0.98594 0.98248 0.90745 1.69701 1.30151 1.09851 1.32295 0.86269 0.82076 0.77885 0.79509 1.19613 1.21816 1.16644 1.21186 0.96422 0.95782 1.02517 1.23532 0.88289 0.94600 0.97041 0.91797 0.90423 0.91639 0.88924 0.91225 0.92271 0.91821 0.75902 0.85091 0.88883 0.89345 0.87321 0.88323 0.87979 0.90187 0.86697 0.88122 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 9.38 37.16 0.35 -0.18 16 2 C 0.15 0.91 3.18 -67.93 -0.22 0.70 16 3 C -0.17 -0.96 9.48 37.15 0.35 -0.61 16 4 N -0.71 -4.99 5.08 -58.73 -0.30 -5.28 16 5 C 0.65 6.94 8.71 54.05 0.47 7.41 16 6 O -0.57 -7.93 15.22 -19.29 -0.29 -8.22 16 7 O -0.35 -3.64 10.33 -40.31 -0.42 -4.06 16 8 C 0.06 0.74 4.61 -26.36 -0.12 0.62 16 9 C 0.11 1.31 8.47 -8.53 -0.07 1.24 16 10 N -0.64 -10.14 3.68 -186.57 -0.69 -10.83 16 11 C 0.60 12.36 8.01 -12.31 -0.10 12.26 16 12 O -0.54 -12.58 17.13 5.32 0.09 -12.49 16 13 C -0.10 -2.23 5.87 -105.04 -0.62 -2.84 16 14 C -0.23 -4.63 9.17 -38.92 -0.36 -4.99 16 15 C -0.08 -1.67 10.01 -39.73 -0.40 -2.06 16 16 C -0.23 -5.37 7.18 -38.81 -0.28 -5.65 16 17 C 0.08 2.08 5.22 -106.87 -0.56 1.52 16 18 C -0.44 -11.76 9.58 -37.73 -0.36 -12.12 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 20 C 0.08 2.12 5.41 -17.34 -0.09 2.03 16 21 N -0.80 -20.87 13.93 55.55 0.77 -20.10 16 22 Si 0.92 20.41 24.43 -169.99 -4.15 16.25 16 23 H -0.27 -5.77 6.64 56.52 0.38 -5.40 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.24 -5.56 6.80 56.52 0.38 -5.17 16 26 C -0.14 -3.40 9.34 -38.44 -0.36 -3.76 16 27 C 0.09 1.10 6.18 -8.66 -0.05 1.05 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.71 7.58 -51.93 -0.39 0.32 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 1.89 8.71 -40.82 -0.36 1.54 16 36 H 0.13 1.62 7.07 -51.93 -0.37 1.26 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.11 1.79 3.93 -52.49 -0.21 1.58 16 40 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 41 H 0.10 2.38 4.14 -52.49 -0.22 2.16 16 42 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 43 H 0.12 2.85 7.66 -52.49 -0.40 2.45 16 44 H 0.10 1.28 6.37 -51.92 -0.33 0.94 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.91 373.31 -7.87 -39.78 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.10 Total: 4.72 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.41 Total: -5.40 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.21 Total: -36.21 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.62 Total: -24.77 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.15 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.91 -7.87 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288322977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.742 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds