Wall clock time and date at job start Tue Mar 31 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 N 1.46499 * 109.46969 * 120.00359 * 2 1 3 5 5 C 1.34774 * 120.00418 * 155.00320 * 4 2 1 6 6 O 1.21519 * 119.99296 * 359.97438 * 5 4 2 7 7 O 1.34634 * 120.00379 * 179.97438 * 5 4 2 8 8 C 1.45203 * 117.00123 * 179.97438 * 7 5 4 9 9 C 1.53488 * 114.21033 * 149.99643 * 8 7 5 10 10 N 1.47061 * 87.98852 * 139.65158 * 9 8 7 11 11 C 1.34775 * 136.05685 * 152.84103 * 10 9 8 12 12 O 1.21549 * 120.00290 * 359.78486 * 11 10 9 13 13 C 1.47892 * 119.99885 * 179.78902 * 11 10 9 14 14 C 1.39919 * 120.02531 * 353.00297 * 13 11 10 15 15 C 1.38329 * 120.35421 * 180.28138 * 14 13 11 16 16 C 1.37753 * 120.41617 * 359.72166 * 15 14 13 17 17 C 1.40744 * 120.03727 * 359.97438 * 16 15 14 18 18 C 1.41437 * 120.17982 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00129 * 155.33400 * 18 17 16 20 20 C 1.39939 * 119.99760 * 335.33729 * 18 17 16 21 21 N 1.30826 * 119.99928 * 160.02641 * 20 18 17 22 22 Si 1.86803 * 120.00154 * 340.03146 * 20 18 17 23 23 H 1.48497 * 109.47124 * 95.34680 * 22 20 18 24 24 H 1.48494 * 109.47081 * 215.35078 * 22 20 18 25 25 H 1.48504 * 109.46987 * 335.34834 * 22 20 18 26 26 C 1.38994 * 120.02158 * 172.72652 * 13 11 10 27 27 C 1.47063 * 87.88341 * 333.10396 * 10 9 8 28 28 H 1.09001 * 109.47463 * 300.00238 * 1 2 3 29 29 H 1.08997 * 109.47422 * 60.00009 * 1 2 3 30 30 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46808 * 239.99390 * 2 1 3 32 32 H 1.09003 * 109.47151 * 299.99988 * 3 2 1 33 33 H 1.09001 * 109.47083 * 59.99529 * 3 2 1 34 34 H 1.08991 * 109.47261 * 180.02562 * 3 2 1 35 35 H 0.97005 * 119.99797 * 334.99533 * 4 2 1 36 36 H 1.09005 * 113.40919 * 16.79553 * 8 7 5 37 37 H 1.09003 * 113.46458 * 24.87222 * 9 8 7 38 38 H 1.09003 * 113.52231 * 254.44837 * 9 8 7 39 39 H 1.07997 * 119.82270 * 0.02562 * 14 13 11 40 40 H 1.08003 * 119.78831 * 179.69871 * 15 14 13 41 41 H 1.07995 * 119.98057 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99626 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.20595 * 359.97438 * 26 13 11 44 44 H 1.09009 * 113.46908 * 141.67924 * 27 10 9 45 45 H 1.08994 * 113.46900 * 272.11150 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2592 1.1944 6 8 3.9368 -1.1993 0.2005 7 8 3.6892 -1.8935 2.2939 8 6 5.0142 -2.4829 2.2201 9 6 5.7578 -2.5299 3.5620 10 7 6.2376 -3.8693 3.1901 11 6 7.3107 -4.6311 3.4811 12 8 8.1711 -4.2089 4.2286 13 6 7.4412 -5.9808 2.8908 14 6 6.3869 -6.5259 2.1499 15 6 6.4995 -7.7901 1.5996 16 6 7.6524 -8.5246 1.7697 17 6 8.7259 -7.9902 2.5065 18 6 9.9113 -8.7415 2.6825 19 1 10.8464 -8.2373 2.8764 20 6 9.8723 -10.1382 2.6055 21 7 10.9702 -10.8116 2.3759 22 14 8.2525 -11.0413 2.8302 23 1 7.6483 -11.3122 1.5010 24 1 8.4955 -12.3257 3.5347 25 1 7.3261 -10.2036 3.6336 26 6 8.6136 -6.7064 3.0669 27 6 5.0346 -4.0090 2.3558 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4424 -0.0005 35 1 1.4621 -0.7387 1.9894 36 1 5.6115 -2.1031 1.3912 37 1 5.0937 -2.5312 4.4264 38 1 6.5545 -1.7905 3.6440 39 1 5.4788 -5.9583 2.0103 40 1 5.6782 -8.2039 1.0334 41 1 7.7326 -9.5110 1.3374 42 1 10.9432 -11.7798 2.3228 43 1 9.4318 -6.2876 3.6340 44 1 5.2176 -4.5248 1.4131 45 1 4.1761 -4.4084 2.8955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288322977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:57 Heat of formation + Delta-G solvation = -70.104276 kcal Electronic energy + Delta-G solvation = -27421.880560 eV Core-core repulsion = 23405.124266 eV Total energy + Delta-G solvation = -4016.756294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.12121 -41.18541 -39.70364 -38.79134 -37.69594 -36.59424 -35.63405 -32.91085 -32.44449 -31.86576 -30.19440 -28.07453 -27.79184 -26.68619 -25.24880 -23.82076 -22.50082 -22.38358 -21.73819 -20.74102 -20.05048 -19.36612 -18.20051 -17.99125 -17.77745 -17.38659 -16.86656 -16.68852 -16.38780 -15.91390 -15.65108 -15.32370 -14.99970 -14.86154 -14.75047 -14.56148 -14.36746 -14.04167 -13.82654 -13.74820 -13.42891 -13.18140 -13.07705 -12.98328 -12.90852 -12.76988 -12.73702 -12.33839 -12.29917 -11.94930 -11.80301 -11.76166 -11.60480 -11.29046 -11.23372 -10.84543 -10.28331 -10.03864 -9.68801 -9.59428 -8.97283 -6.57875 0.11439 0.71527 0.88325 1.23359 1.40997 1.47313 1.68253 1.71644 1.87352 2.09758 2.58594 2.99581 3.10447 3.39504 3.44736 3.75505 3.93345 3.94412 4.14186 4.17401 4.27933 4.33095 4.37142 4.42823 4.44589 4.53336 4.56946 4.67670 4.76788 4.78885 4.87068 4.88812 4.96562 5.02403 5.14726 5.27216 5.35821 5.38345 5.38850 5.48433 5.61611 5.68125 5.80453 6.07827 6.25955 6.38787 6.42726 6.62323 6.69478 6.99441 7.27462 8.11070 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.002177 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.718333 B =12857.957862 C =13536.145994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.689 5.689 5 C 0.643 3.357 6 O -0.604 6.604 7 O -0.341 6.341 8 C 0.080 3.920 9 C 0.108 3.892 10 N -0.642 5.642 11 C 0.598 3.402 12 O -0.581 6.581 13 C -0.107 4.107 14 C -0.202 4.202 15 C -0.079 4.079 16 C -0.232 4.232 17 C 0.066 3.934 18 C -0.483 4.483 19 H 0.051 0.949 20 C 0.044 3.956 21 N -0.840 5.840 22 Si 0.973 3.027 23 H -0.246 1.246 24 H -0.277 1.277 25 H -0.251 1.251 26 C -0.171 4.171 27 C 0.085 3.915 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.420 0.580 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.297 0.703 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.419 18.640 -3.738 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 C -0.223 4.223 4 N -0.350 5.350 5 C 0.395 3.605 6 O -0.495 6.495 7 O -0.253 6.253 8 C 0.023 3.977 9 C -0.014 4.014 10 N -0.378 5.378 11 C 0.391 3.609 12 O -0.462 6.462 13 C -0.110 4.110 14 C -0.221 4.221 15 C -0.097 4.097 16 C -0.251 4.251 17 C 0.064 3.936 18 C -0.511 4.511 19 H 0.069 0.931 20 C -0.171 4.171 21 N -0.465 5.465 22 Si 0.795 3.205 23 H -0.171 1.171 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.192 4.192 27 C -0.037 4.037 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.258 0.742 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.192 18.530 -3.780 32.306 hybrid contribution 0.698 -0.596 0.529 1.059 sum -25.494 17.935 -3.251 31.340 Atomic orbital electron populations 1.22057 0.90900 1.03543 1.04574 1.21136 0.95906 0.92406 0.86001 1.22214 1.00592 0.95697 1.03753 1.44891 1.14150 1.56808 1.19110 1.18422 0.83366 0.77318 0.81385 1.91007 1.58119 1.65346 1.34984 1.86279 1.34419 1.66696 1.37945 1.24303 0.80741 0.93065 0.99640 1.23324 0.97008 0.83613 0.97410 1.48811 1.20691 1.19080 1.49228 1.18071 0.79214 0.84282 0.79335 1.90704 1.41994 1.74262 1.39243 1.19539 0.96621 0.92812 1.02027 1.21476 0.99333 0.97524 1.03787 1.21040 0.96708 0.94012 0.97915 1.21358 0.96601 1.01361 1.05798 1.17764 0.92854 0.92334 0.90676 1.19497 0.94719 0.92355 1.44576 0.93094 1.26978 1.01972 0.98201 0.89995 1.69726 1.31985 1.10647 1.34135 0.85418 0.77870 0.76866 0.80344 1.17146 1.20364 1.17498 1.21113 0.97440 0.96528 1.04079 1.23830 0.87465 0.95524 0.96892 0.90350 0.89274 0.91544 0.90923 0.89770 0.91019 0.94622 0.74210 0.86212 0.86235 0.89368 0.82836 0.83479 0.87487 0.89198 0.89239 0.87798 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.38 71.98 0.68 0.18 16 2 C 0.15 1.43 3.18 44.99 0.14 1.58 16 3 C -0.16 -1.56 9.48 71.98 0.68 -0.88 16 4 N -0.69 -7.80 5.08 -570.14 -2.90 -10.70 16 5 C 0.64 12.23 8.71 129.79 1.13 13.36 16 6 O -0.60 -16.13 15.22 19.78 0.30 -15.83 16 7 O -0.34 -5.86 10.33 -55.43 -0.57 -6.43 16 8 C 0.08 1.57 4.61 30.84 0.14 1.72 16 9 C 0.11 2.31 8.47 83.17 0.70 3.02 16 10 N -0.64 -18.70 3.68 -862.93 -3.18 -21.88 16 11 C 0.60 24.25 8.01 86.80 0.70 24.94 16 12 O -0.58 -27.91 17.13 -3.87 -0.07 -27.98 16 13 C -0.11 -4.64 5.87 -20.13 -0.12 -4.76 16 14 C -0.20 -7.27 9.17 22.70 0.21 -7.06 16 15 C -0.08 -2.94 10.01 22.18 0.22 -2.72 16 16 C -0.23 -10.60 7.18 22.77 0.16 -10.44 16 17 C 0.07 3.50 5.22 -21.32 -0.11 3.39 16 18 C -0.48 -28.03 9.58 23.47 0.22 -27.80 16 19 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 20 C 0.04 2.39 5.41 85.25 0.46 2.85 16 21 N -0.84 -46.20 13.93 21.82 0.30 -45.89 16 22 Si 0.97 41.79 24.43 68.60 1.68 43.47 16 23 H -0.25 -9.61 6.64 99.48 0.66 -8.95 16 24 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.25 -11.01 6.80 99.48 0.68 -10.33 16 26 C -0.17 -8.79 9.34 23.01 0.21 -8.58 16 27 C 0.08 1.73 6.18 83.08 0.51 2.24 16 28 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 29 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 1.03 7.58 -2.39 -0.02 1.01 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.42 2.38 8.71 -92.70 -0.81 1.58 16 36 H 0.12 2.75 7.07 -2.38 -0.02 2.73 16 37 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.15 4.13 3.93 -2.91 -0.01 4.12 16 40 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.11 4.76 4.14 -2.91 -0.01 4.75 16 42 H 0.30 14.50 8.30 -92.71 -0.77 13.73 16 43 H 0.09 4.91 7.66 -2.91 -0.02 4.88 16 44 H 0.10 2.11 6.37 -2.38 -0.02 2.10 16 45 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -75.66 373.31 1.67 -73.99 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.15 Total: 20.23 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.95 Total: -8.97 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -5.77 Total: -78.47 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.34 Total: -50.24 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Total: -75.66 1.67 -73.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288322977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.886 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds