Wall clock time and date at job start Tue Mar 31 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00351 * 2 1 4 4 N 1.46894 * 109.47397 * 125.52688 * 3 2 1 5 5 C 1.46902 * 110.99951 * 197.86824 * 4 3 2 6 6 C 1.50694 * 109.47375 * 66.04786 * 5 4 3 7 7 H 1.08003 * 119.99795 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00271 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99694 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00204 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46898 * 59.99954 * 10 8 6 12 12 H 1.48499 * 109.47199 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47310 * 300.00139 * 10 8 6 14 14 C 1.46897 * 111.00330 * 73.90863 * 4 3 2 15 15 C 1.52993 * 109.47594 * 200.11943 * 14 4 3 16 16 C 1.50695 * 109.47469 * 181.67253 * 15 14 4 17 17 O 1.21297 * 119.99954 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00387 * 180.02562 * 16 15 14 19 19 C 1.40100 * 120.00134 * 184.89967 * 18 16 15 20 20 C 1.38839 * 120.00104 * 214.21990 * 19 18 16 21 21 C 1.38178 * 120.06570 * 179.76830 * 20 19 18 22 22 C 1.38551 * 120.11982 * 0.42232 * 21 20 19 23 23 C 1.39283 * 119.94535 * 359.57345 * 22 21 20 24 24 C 1.38494 * 119.89275 * 0.22043 * 23 22 21 25 25 O 1.36506 * 108.64546 * 180.24924 * 23 22 21 26 26 C 1.43982 * 105.49906 * 342.69896 * 25 23 22 27 27 O 1.36601 * 131.44514 * 179.87860 * 22 21 20 28 28 H 1.07996 * 119.99981 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99742 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00156 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46664 * 5.52774 * 3 2 1 32 32 H 1.09002 * 109.47104 * 245.52963 * 3 2 1 33 33 H 1.09006 * 109.46820 * 186.04326 * 5 4 3 34 34 H 1.08995 * 109.47204 * 306.04116 * 5 4 3 35 35 H 0.96997 * 120.00175 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46613 * 80.11456 * 14 4 3 37 37 H 1.08998 * 109.47052 * 320.12337 * 14 4 3 38 38 H 1.09000 * 109.47131 * 61.67316 * 15 14 4 39 39 H 1.09004 * 109.47031 * 301.67618 * 15 14 4 40 40 H 0.96991 * 119.99773 * 4.89775 * 18 16 15 41 41 H 1.07994 * 119.96790 * 359.97438 * 20 19 18 42 42 H 1.08007 * 119.93613 * 180.28170 * 21 20 19 43 43 H 1.07999 * 120.01125 * 180.02562 * 24 23 22 44 44 H 1.09001 * 110.57039 * 268.58834 * 26 25 23 45 45 H 1.08999 * 110.57093 * 145.71481 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0054 1.3268 1.1271 5 6 3.4427 2.6979 1.4214 6 6 2.2702 3.5034 1.9185 7 1 1.2972 3.0430 2.0066 8 6 2.4392 4.8286 2.2599 9 7 3.6238 5.3894 2.1521 10 14 0.9856 5.8273 2.8755 11 1 0.4448 5.2048 4.1105 12 1 1.4277 7.2133 3.1731 13 1 -0.0714 5.8574 1.8328 14 6 4.1562 0.4511 0.8686 15 6 4.8369 0.0990 2.1927 16 6 6.0414 -0.7657 1.9240 17 8 6.3277 -1.0700 0.7852 18 7 6.8008 -1.2009 2.9489 19 6 7.9771 -1.9179 2.6941 20 6 8.3751 -2.9287 3.5587 21 6 9.5326 -3.6399 3.3061 22 6 10.3037 -3.3409 2.1946 23 6 9.9070 -2.3275 1.3254 24 6 8.7445 -1.6180 1.5771 25 8 10.8229 -2.2336 0.3175 26 6 11.9944 -2.9197 0.7970 27 8 11.4691 -3.8818 1.7306 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3594 2.1312 0.0990 32 1 2.6139 1.4069 -0.9354 33 1 4.2186 2.6754 2.1867 34 1 3.8396 3.1552 0.5151 35 1 3.7427 6.3217 2.3919 36 1 4.8658 0.9657 0.2207 37 1 3.8154 -0.4622 0.3810 38 1 4.1362 -0.4417 2.8289 39 1 5.1512 1.0143 2.6943 40 1 6.5328 -1.0177 3.8629 41 1 7.7777 -3.1616 4.4277 42 1 9.8378 -4.4289 3.9776 43 1 8.4349 -0.8321 0.9041 44 1 12.6661 -2.2245 1.3007 45 1 12.5066 -3.4223 -0.0234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292184108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:10 Heat of formation + Delta-G solvation = -38.620032 kcal Electronic energy + Delta-G solvation = -27423.010527 eV Core-core repulsion = 23407.619493 eV Total energy + Delta-G solvation = -4015.391035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36005 -40.37612 -37.98309 -37.02840 -36.46959 -34.48206 -33.30343 -32.65734 -30.93261 -30.56364 -29.04002 -27.13477 -26.08253 -24.96348 -23.64312 -23.26410 -22.48458 -20.76588 -20.06754 -19.07286 -18.71003 -18.12368 -17.70197 -16.84315 -16.70594 -16.45260 -15.66051 -15.53985 -15.03639 -14.75201 -14.67155 -14.24640 -14.15370 -14.07156 -13.81805 -13.38998 -13.30038 -13.18097 -13.01175 -12.77273 -12.58530 -12.15856 -11.79980 -11.69884 -11.49885 -11.38773 -10.95527 -10.91781 -10.72028 -10.63424 -10.21265 -10.08307 -9.85327 -9.79149 -9.24853 -8.91100 -8.88353 -8.46982 -7.97439 -7.29929 -6.06537 -4.08002 0.83827 1.00292 2.44876 2.56473 2.73748 2.93445 3.23843 3.30916 3.35427 3.38135 3.44750 4.28317 4.38874 4.40338 4.60226 4.67416 4.79216 4.83701 5.00093 5.12457 5.28731 5.29825 5.35881 5.44587 5.46401 5.62969 5.72332 5.83537 5.91635 5.94720 6.01488 6.04413 6.09936 6.25211 6.28674 6.40254 6.49086 6.56181 6.91234 7.05720 7.18375 7.24192 7.29673 7.32077 7.76467 8.01923 8.07731 8.15312 8.49676 8.99879 9.56451 11.04127 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002276 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.358228 B =12299.002946 C =13106.253547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C 0.084 3.916 4 N -0.535 5.535 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.070 3.930 15 C -0.131 4.131 16 C 0.517 3.483 17 O -0.519 6.519 18 N -0.676 5.676 19 C 0.169 3.831 20 C -0.140 4.140 21 C -0.079 4.079 22 C 0.007 3.993 23 C 0.054 3.946 24 C -0.105 4.105 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.311 6.311 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.032 0.968 34 H -0.008 1.008 35 H 0.262 0.738 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.416 0.584 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.083 0.917 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.059 -17.318 2.693 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.149 4.149 3 C -0.043 4.043 4 N -0.259 5.259 5 C 0.066 3.934 6 C -0.548 4.548 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.059 4.059 15 C -0.172 4.172 16 C 0.306 3.694 17 O -0.394 6.394 18 N -0.322 5.322 19 C 0.074 3.926 20 C -0.160 4.160 21 C -0.098 4.098 22 C -0.038 4.038 23 C 0.009 3.991 24 C -0.126 4.126 25 O -0.222 6.222 26 C 0.101 3.899 27 O -0.227 6.227 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.253 0.747 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.101 0.899 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.165 -17.555 2.114 21.462 hybrid contribution -0.095 1.013 0.047 1.019 sum 12.070 -16.541 2.162 20.591 Atomic orbital electron populations 1.23691 0.95946 1.01176 1.03231 1.23010 0.95859 0.98535 0.97508 1.21161 0.95847 0.95495 0.91815 1.62060 1.13257 1.12836 1.37726 1.19788 0.96425 0.81717 0.95452 1.21127 0.95700 0.94626 1.43302 0.91821 1.24984 0.95882 0.97796 0.95866 1.69944 1.22050 1.13015 1.48746 0.86579 0.82588 0.78957 0.79403 1.20151 1.21401 1.20271 1.21724 0.92865 0.97656 0.93696 1.21658 0.93729 0.99910 1.01857 1.21333 0.84278 0.79333 0.84424 1.90720 1.71284 1.55698 1.21668 1.43699 1.21942 1.55479 1.11124 1.17245 0.86998 0.92892 0.95467 1.20651 0.97832 0.95609 1.01930 1.19774 0.94180 1.01379 0.94473 1.19757 0.90463 0.96200 0.97352 1.19495 0.94000 0.97591 0.87985 1.19961 0.91916 1.01280 0.99457 1.87397 1.23750 1.74413 1.36674 1.25612 0.87606 0.85995 0.90654 1.87355 1.35072 1.42358 1.57956 0.89314 0.88617 0.88351 0.88922 0.95174 0.95020 0.99039 0.92842 0.94644 0.91470 0.87907 0.87592 0.74664 0.83991 0.84351 0.83406 0.89908 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 14.32 29.02 0.42 -2.59 16 2 C -0.13 -2.13 9.30 -36.02 -0.33 -2.46 16 3 C 0.08 1.63 5.24 -4.98 -0.03 1.60 16 4 N -0.53 -10.96 4.36 -237.52 -1.03 -12.00 16 5 C 0.19 4.73 4.55 -4.98 -0.02 4.71 16 6 C -0.51 -13.71 8.26 -34.44 -0.28 -13.99 16 7 H 0.06 1.70 7.28 -52.48 -0.38 1.32 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 10 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 C 0.07 1.24 4.11 -3.83 -0.02 1.22 16 15 C -0.13 -1.91 5.84 -27.89 -0.16 -2.07 16 16 C 0.52 7.27 7.57 -10.99 -0.08 7.19 16 17 O -0.52 -9.07 13.71 5.54 0.08 -8.99 16 18 N -0.68 -7.28 5.34 -9.84 -0.05 -7.33 16 19 C 0.17 1.96 6.27 -83.65 -0.52 1.43 16 20 C -0.14 -1.26 9.96 -39.38 -0.39 -1.65 16 21 C -0.08 -0.74 10.05 -39.49 -0.40 -1.14 16 22 C 0.01 0.08 7.15 -39.08 -0.28 -0.20 16 23 C 0.05 0.72 7.15 -39.10 -0.28 0.44 16 24 C -0.11 -1.44 8.67 -39.28 -0.34 -1.78 16 25 O -0.31 -3.85 11.40 -45.71 -0.52 -4.37 16 26 C 0.21 1.81 8.89 101.05 0.90 2.70 16 27 O -0.31 -3.39 11.41 -46.02 -0.53 -3.91 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.44 7.84 -52.48 -0.41 1.03 16 30 H 0.10 1.49 7.17 -52.49 -0.38 1.11 16 31 H 0.09 1.95 6.23 -51.93 -0.32 1.63 16 32 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.03 0.81 6.63 -51.93 -0.34 0.47 16 34 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.69 7.91 -51.93 -0.41 0.28 16 37 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.11 1.61 6.77 -51.93 -0.35 1.26 16 40 H 0.42 3.07 8.82 -40.82 -0.36 2.71 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.15 2.29 6.46 -52.49 -0.34 1.95 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -32.98 377.95 -8.73 -41.71 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.16 Total: 3.47 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.93 Total: -5.14 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.35 Total: -44.52 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.97 Total: -17.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.98 -8.73 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292184108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.090 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds