Wall clock time and date at job start Tue Mar 31 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00351 * 2 1 4 4 N 1.46894 * 109.47397 * 125.52688 * 3 2 1 5 5 C 1.46902 * 110.99951 * 197.86824 * 4 3 2 6 6 C 1.50694 * 109.47375 * 66.04786 * 5 4 3 7 7 H 1.08003 * 119.99795 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00271 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99694 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00204 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46898 * 59.99954 * 10 8 6 12 12 H 1.48499 * 109.47199 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47310 * 300.00139 * 10 8 6 14 14 C 1.46897 * 111.00330 * 73.90863 * 4 3 2 15 15 C 1.52993 * 109.47594 * 200.11943 * 14 4 3 16 16 C 1.50695 * 109.47469 * 181.67253 * 15 14 4 17 17 O 1.21297 * 119.99954 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00387 * 180.02562 * 16 15 14 19 19 C 1.40100 * 120.00134 * 184.89967 * 18 16 15 20 20 C 1.38839 * 120.00104 * 214.21990 * 19 18 16 21 21 C 1.38178 * 120.06570 * 179.76830 * 20 19 18 22 22 C 1.38551 * 120.11982 * 0.42232 * 21 20 19 23 23 C 1.39283 * 119.94535 * 359.57345 * 22 21 20 24 24 C 1.38494 * 119.89275 * 0.22043 * 23 22 21 25 25 O 1.36506 * 108.64546 * 180.24924 * 23 22 21 26 26 C 1.43982 * 105.49906 * 342.69896 * 25 23 22 27 27 O 1.36601 * 131.44514 * 179.87860 * 22 21 20 28 28 H 1.07996 * 119.99981 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99742 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00156 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46664 * 5.52774 * 3 2 1 32 32 H 1.09002 * 109.47104 * 245.52963 * 3 2 1 33 33 H 1.09006 * 109.46820 * 186.04326 * 5 4 3 34 34 H 1.08995 * 109.47204 * 306.04116 * 5 4 3 35 35 H 0.96997 * 120.00175 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46613 * 80.11456 * 14 4 3 37 37 H 1.08998 * 109.47052 * 320.12337 * 14 4 3 38 38 H 1.09000 * 109.47131 * 61.67316 * 15 14 4 39 39 H 1.09004 * 109.47031 * 301.67618 * 15 14 4 40 40 H 0.96991 * 119.99773 * 4.89775 * 18 16 15 41 41 H 1.07994 * 119.96790 * 359.97438 * 20 19 18 42 42 H 1.08007 * 119.93613 * 180.28170 * 21 20 19 43 43 H 1.07999 * 120.01125 * 180.02562 * 24 23 22 44 44 H 1.09001 * 110.57039 * 268.58834 * 26 25 23 45 45 H 1.08999 * 110.57093 * 145.71481 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0054 1.3268 1.1271 5 6 3.4427 2.6979 1.4214 6 6 2.2702 3.5034 1.9185 7 1 1.2972 3.0430 2.0066 8 6 2.4392 4.8286 2.2599 9 7 3.6238 5.3894 2.1521 10 14 0.9856 5.8273 2.8755 11 1 0.4448 5.2048 4.1105 12 1 1.4277 7.2133 3.1731 13 1 -0.0714 5.8574 1.8328 14 6 4.1562 0.4511 0.8686 15 6 4.8369 0.0990 2.1927 16 6 6.0414 -0.7657 1.9240 17 8 6.3277 -1.0700 0.7852 18 7 6.8008 -1.2009 2.9489 19 6 7.9771 -1.9179 2.6941 20 6 8.3751 -2.9287 3.5587 21 6 9.5326 -3.6399 3.3061 22 6 10.3037 -3.3409 2.1946 23 6 9.9070 -2.3275 1.3254 24 6 8.7445 -1.6180 1.5771 25 8 10.8229 -2.2336 0.3175 26 6 11.9944 -2.9197 0.7970 27 8 11.4691 -3.8818 1.7306 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3594 2.1312 0.0990 32 1 2.6139 1.4069 -0.9354 33 1 4.2186 2.6754 2.1867 34 1 3.8396 3.1552 0.5151 35 1 3.7427 6.3217 2.3919 36 1 4.8658 0.9657 0.2207 37 1 3.8154 -0.4622 0.3810 38 1 4.1362 -0.4417 2.8289 39 1 5.1512 1.0143 2.6943 40 1 6.5328 -1.0177 3.8629 41 1 7.7777 -3.1616 4.4277 42 1 9.8378 -4.4289 3.9776 43 1 8.4349 -0.8321 0.9041 44 1 12.6661 -2.2245 1.3007 45 1 12.5066 -3.4223 -0.0234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292184108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:09 Heat of formation + Delta-G solvation = -61.405021 kcal Electronic energy + Delta-G solvation = -27423.998559 eV Core-core repulsion = 23407.619493 eV Total energy + Delta-G solvation = -4016.379066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.17332 -41.44382 -39.12719 -38.44006 -37.30471 -35.47929 -34.96361 -34.36788 -32.22180 -31.52207 -30.05597 -28.96603 -26.90175 -26.35131 -25.13597 -24.22701 -23.61971 -22.18368 -21.33666 -20.42870 -19.63138 -18.95433 -18.65025 -18.48812 -17.78124 -17.56801 -16.98710 -16.64357 -16.48290 -16.20175 -15.70758 -15.54706 -15.45739 -15.05773 -14.97975 -14.62619 -14.38251 -14.22631 -14.03281 -13.99082 -13.82887 -13.75803 -13.36856 -13.15149 -12.72018 -12.60528 -12.56054 -12.41028 -12.24244 -12.13350 -11.94961 -11.52627 -11.23408 -11.07292 -10.85013 -10.57616 -10.23399 -9.79292 -9.04867 -8.82921 -8.18033 -6.27318 -0.03438 0.14556 1.43633 1.45778 1.46841 1.47568 1.53942 1.66331 1.99396 2.42543 2.49830 2.58645 3.14870 3.35106 3.43727 3.75014 3.82074 3.99298 4.00780 4.02000 4.09102 4.13710 4.24744 4.28589 4.41563 4.50615 4.55734 4.60260 4.69107 4.83839 4.95043 5.01381 5.03873 5.08067 5.10129 5.14351 5.21836 5.26321 5.27391 5.53917 5.67600 5.78574 6.01537 6.06761 6.07662 6.29992 6.35441 6.59603 6.88439 7.05609 7.42088 8.92793 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002276 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.358228 B =12299.002946 C =13106.253547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.084 3.916 4 N -0.530 5.530 5 C 0.206 3.794 6 C -0.520 4.520 7 H 0.064 0.936 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.072 3.928 15 C -0.121 4.121 16 C 0.522 3.478 17 O -0.559 6.559 18 N -0.656 5.656 19 C 0.154 3.846 20 C -0.118 4.118 21 C -0.072 4.072 22 C 0.001 3.999 23 C 0.030 3.970 24 C -0.132 4.132 25 O -0.334 6.334 26 C 0.205 3.795 27 O -0.319 6.319 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.019 0.981 34 H -0.046 1.046 35 H 0.264 0.736 36 H 0.008 0.992 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.435 0.565 41 H 0.184 0.816 42 H 0.173 0.827 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 -19.550 4.970 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C -0.044 4.044 4 N -0.254 5.254 5 C 0.079 3.921 6 C -0.558 4.558 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.056 4.056 15 C -0.161 4.161 16 C 0.311 3.689 17 O -0.437 6.437 18 N -0.304 5.304 19 C 0.059 3.941 20 C -0.138 4.138 21 C -0.091 4.091 22 C -0.044 4.044 23 C -0.015 4.015 24 C -0.153 4.153 25 O -0.250 6.250 26 C 0.094 3.906 27 O -0.236 6.236 28 H 0.138 0.862 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.037 0.963 34 H -0.029 1.029 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.275 0.725 41 H 0.201 0.799 42 H 0.191 0.809 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.215 -19.811 4.429 23.192 hybrid contribution 0.267 1.655 -0.707 1.819 sum 11.482 -18.156 3.721 21.802 Atomic orbital electron populations 1.23925 0.95367 1.02439 1.00192 1.22841 0.96329 0.97199 1.00219 1.21146 0.95320 0.96914 0.90997 1.62074 1.14157 1.10556 1.38578 1.19464 0.95518 0.83848 0.93221 1.21409 0.96119 0.95222 1.43050 0.91752 1.25864 0.98614 0.98988 0.95985 1.70077 1.24229 1.13382 1.49786 0.85496 0.79109 0.77220 0.79176 1.18973 1.21161 1.19544 1.21736 0.91540 0.97018 0.95353 1.21513 0.94395 1.00045 1.00168 1.21139 0.84264 0.79067 0.84409 1.90718 1.72227 1.57339 1.23384 1.43414 1.21172 1.54520 1.11301 1.17423 0.86925 0.94095 0.95684 1.21068 0.97462 0.93405 1.01827 1.20269 0.93406 1.01562 0.93855 1.20083 0.90875 0.95741 0.97709 1.19663 0.94298 0.98662 0.88916 1.19914 0.93308 1.01648 1.00403 1.87348 1.24984 1.75248 1.37469 1.26106 0.86549 0.86292 0.91629 1.87324 1.34820 1.43067 1.58341 0.86154 0.89138 0.86784 0.91196 0.96003 0.96305 1.02862 0.92766 0.97336 0.90221 0.85267 0.88432 0.72473 0.79907 0.80935 0.86607 0.87809 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.97 14.32 67.78 0.97 -4.00 16 2 C -0.15 -4.63 9.30 25.65 0.24 -4.39 16 3 C 0.08 3.31 5.24 85.56 0.45 3.76 16 4 N -0.53 -22.32 4.36 -905.39 -3.94 -26.27 16 5 C 0.21 10.66 4.55 85.55 0.39 11.05 16 6 C -0.52 -28.57 8.26 25.60 0.21 -28.36 16 7 H 0.06 3.46 7.28 -2.91 -0.02 3.44 16 8 C 0.00 0.20 5.46 84.66 0.46 0.66 16 9 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 10 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.07 2.65 4.11 86.30 0.35 3.01 16 15 C -0.12 -3.53 5.84 29.84 0.17 -3.36 16 16 C 0.52 14.86 7.57 87.65 0.66 15.53 16 17 O -0.56 -20.48 13.71 -3.08 -0.04 -20.53 16 18 N -0.66 -13.51 5.34 -303.43 -1.62 -15.13 16 19 C 0.15 3.43 6.27 38.10 0.24 3.67 16 20 C -0.12 -1.74 9.96 22.40 0.22 -1.52 16 21 C -0.07 -1.13 10.05 22.33 0.22 -0.91 16 22 C 0.00 0.02 7.15 22.60 0.16 0.18 16 23 C 0.03 0.80 7.15 22.58 0.16 0.96 16 24 C -0.13 -3.80 8.67 22.47 0.19 -3.61 16 25 O -0.33 -8.75 11.40 -76.12 -0.87 -9.62 16 26 C 0.20 3.34 8.89 113.37 1.01 4.34 16 27 O -0.32 -6.55 11.41 -77.25 -0.88 -7.43 16 28 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.09 2.58 7.84 -2.91 -0.02 2.55 16 30 H 0.11 3.24 7.17 -2.91 -0.02 3.22 16 31 H 0.07 3.04 6.23 -2.39 -0.01 3.03 16 32 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 33 H 0.02 1.02 6.63 -2.38 -0.02 1.00 16 34 H -0.05 -2.71 8.12 -2.39 -0.02 -2.73 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.01 0.35 7.91 -2.39 -0.02 0.33 16 37 H 0.08 2.72 6.66 -2.39 -0.02 2.70 16 38 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 3.04 6.77 -2.38 -0.02 3.03 16 40 H 0.43 5.45 8.82 -92.71 -0.82 4.63 16 41 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.12 4.02 6.46 -2.91 -0.02 4.00 16 44 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.56 377.95 1.28 -74.28 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.20 Total: 17.37 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.12 Total: -2.98 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -5.28 Total: -96.41 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.79 Total: -37.58 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.56 1.28 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292184108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.871 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds