Wall clock time and date at job start Tue Mar 31 2020 17:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99906 * 2 1 4 4 N 1.46503 * 109.47167 * 235.00177 * 3 2 1 5 5 C 1.46492 * 119.99864 * 86.42061 * 4 3 2 6 6 C 1.50705 * 109.47044 * 82.94240 * 5 4 3 7 7 H 1.07994 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00515 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99961 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47279 * 89.99870 * 10 8 6 12 12 H 1.48497 * 109.47658 * 209.99983 * 10 8 6 13 13 H 1.48503 * 109.46838 * 330.00233 * 10 8 6 14 14 C 1.34771 * 119.99763 * 266.42666 * 4 3 2 15 15 O 1.21516 * 120.00599 * 4.31446 * 14 4 3 16 16 C 1.48164 * 119.99726 * 184.32582 * 14 4 3 17 17 C 1.39962 * 120.89609 * 47.15321 * 16 14 4 18 18 C 1.37978 * 119.13989 * 180.02562 * 17 16 14 19 19 N 1.31912 * 120.97358 * 0.02636 * 18 17 16 20 20 C 1.32178 * 121.97105 * 359.97438 * 19 18 17 21 21 O 1.35687 * 119.62219 * 180.02562 * 20 19 18 22 22 C 1.42896 * 117.00006 * 359.97438 * 21 20 19 23 23 H 1.09002 * 110.75168 * 32.02558 * 22 21 20 24 24 C 1.55305 * 110.84927 * 155.71678 * 22 21 20 25 25 C 1.54939 * 100.94475 * 152.32516 * 24 22 21 26 26 O 1.43647 * 105.13621 * 323.55643 * 25 24 22 27 27 C 1.43239 * 109.97109 * 24.43135 * 26 25 24 28 28 C 1.38894 * 120.75477 * 359.71758 * 20 19 18 29 29 H 1.07993 * 120.00084 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99448 * 359.72239 * 1 2 3 31 31 H 1.07997 * 119.99619 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46861 * 355.00188 * 3 2 1 33 33 H 1.08999 * 109.46698 * 115.00491 * 3 2 1 34 34 H 1.09008 * 109.47375 * 202.93871 * 5 4 3 35 35 H 1.09001 * 109.47509 * 322.94150 * 5 4 3 36 36 H 0.96999 * 120.00306 * 180.02562 * 9 8 6 37 37 H 1.08001 * 120.43431 * 359.97438 * 17 16 14 38 38 H 1.07990 * 119.51555 * 180.02562 * 18 17 16 39 39 H 1.08998 * 111.12529 * 270.24756 * 24 22 21 40 40 H 1.09007 * 111.12309 * 34.40597 * 24 22 21 41 41 H 1.08994 * 110.31462 * 204.64316 * 25 24 22 42 42 H 1.08995 * 110.31076 * 82.47064 * 25 24 22 43 43 H 1.09004 * 109.83023 * 238.77513 * 27 26 25 44 44 H 1.08996 * 109.91247 * 117.84117 * 27 26 25 45 45 H 1.07993 * 120.53039 * 180.28932 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3320 -1.1315 5 6 2.5364 1.7918 -2.4450 6 6 2.5880 3.2971 -2.4963 7 1 2.9272 3.8553 -1.6363 8 6 2.2012 3.9615 -3.6408 9 7 1.7876 3.2817 -4.6879 10 14 2.2645 5.8273 -3.7041 11 1 3.5953 6.2610 -4.2003 12 1 1.2078 6.3278 -4.6196 13 1 2.0408 6.3767 -2.3427 14 6 4.2703 0.9336 -0.9639 15 8 4.6297 0.4786 0.1041 16 6 5.2357 1.0506 -2.0817 17 6 5.3347 2.2324 -2.8251 18 6 6.2459 2.3015 -3.8588 19 7 7.0187 1.2736 -4.1525 20 6 6.9597 0.1384 -3.4780 21 8 7.7775 -0.8887 -3.8207 22 6 8.6699 -0.6700 -4.9151 23 1 8.9766 0.3750 -4.9605 24 6 9.9033 -1.6088 -4.8187 25 6 10.2869 -1.7450 -6.3137 26 8 9.0369 -1.7659 -7.0212 27 6 8.0252 -1.1116 -6.2466 28 6 6.0745 -0.0130 -2.4184 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 -0.0895 33 1 2.6214 1.4026 0.9314 34 1 3.1829 1.3795 -3.2198 35 1 1.5122 1.4575 -2.6106 36 1 1.5159 3.7492 -5.4932 37 1 4.7055 3.0789 -2.5931 38 1 6.3277 3.2105 -4.4361 39 1 10.7071 -1.1441 -4.2477 40 1 9.6296 -2.5746 -4.3938 41 1 10.8320 -2.6738 -6.4814 42 1 10.8863 -0.8913 -6.6298 43 1 7.2058 -1.8028 -6.0492 44 1 7.6521 -0.2397 -6.7838 45 1 6.0326 -0.9405 -1.8669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292289388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:40 Heat of formation + Delta-G solvation = -66.889295 kcal Electronic energy + Delta-G solvation = -28560.076996 eV Core-core repulsion = 24543.460114 eV Total energy + Delta-G solvation = -4016.616882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02459 -41.00062 -40.07289 -38.38130 -37.27051 -35.26611 -34.13192 -33.34084 -32.85365 -31.23705 -29.85223 -29.41335 -27.74174 -25.50902 -24.69786 -24.45717 -23.48739 -22.65146 -21.29907 -20.58842 -19.26413 -18.59724 -18.34573 -17.88850 -17.54306 -17.17302 -16.79787 -16.72696 -16.37662 -16.23250 -16.06202 -15.71059 -15.47643 -15.13139 -14.54891 -14.47440 -14.32390 -14.21491 -14.10723 -13.90881 -13.48695 -13.41013 -12.99059 -12.77930 -12.72931 -12.60245 -12.55019 -12.27602 -12.15894 -11.91409 -11.82722 -11.67847 -11.36403 -10.93448 -10.64861 -10.61661 -10.55742 -10.31342 -9.60862 -9.52250 -8.18320 -6.32205 -0.21730 0.16177 1.23000 1.46352 1.50558 1.57394 1.60391 1.77581 2.30421 2.45406 2.73165 2.85215 3.12176 3.19653 3.36222 3.46655 3.73463 3.91983 3.93398 4.00418 4.04325 4.10888 4.17829 4.23390 4.30917 4.49359 4.62245 4.63840 4.65381 4.77631 4.79252 4.83553 4.84972 4.89228 4.98323 5.01942 5.19002 5.22130 5.41093 5.56431 5.66787 5.72148 5.86043 5.86981 6.03265 6.13268 6.42385 6.72010 6.76778 7.07826 7.37900 8.87522 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.003579 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.773318 B = 7820.965191 C = 9426.246225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.142 3.858 4 N -0.581 5.581 5 C 0.251 3.749 6 C -0.542 4.542 7 H 0.063 0.937 8 C 0.034 3.966 9 N -0.912 5.912 10 Si 0.949 3.051 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.270 1.270 14 C 0.555 3.445 15 O -0.579 6.579 16 C -0.055 4.055 17 C -0.157 4.157 18 C 0.134 3.866 19 N -0.529 5.529 20 C 0.302 3.698 21 O -0.296 6.296 22 C 0.054 3.946 23 H 0.105 0.895 24 C -0.146 4.146 25 C 0.049 3.951 26 O -0.398 6.398 27 C 0.038 3.962 28 C -0.152 4.152 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.522 -5.347 -0.002 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.020 3.980 4 N -0.309 5.309 5 C 0.131 3.869 6 C -0.580 4.580 7 H 0.081 0.919 8 C -0.168 4.168 9 N -0.550 5.550 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.195 1.195 14 C 0.343 3.657 15 O -0.461 6.461 16 C -0.066 4.066 17 C -0.177 4.177 18 C -0.021 4.021 19 N -0.252 5.252 20 C 0.124 3.876 21 O -0.203 6.203 22 C -0.002 4.002 23 H 0.122 0.878 24 C -0.183 4.183 25 C -0.026 4.026 26 O -0.318 6.318 27 C -0.039 4.039 28 C -0.174 4.174 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.189 -5.842 -0.416 12.629 hybrid contribution -0.998 1.021 0.458 1.500 sum 10.191 -4.820 0.042 11.273 Atomic orbital electron populations 1.24039 0.94991 1.03122 0.97921 1.23185 0.96811 0.98024 1.02294 1.20593 0.91978 0.96355 0.89050 1.48167 1.08688 1.61070 1.12956 1.19221 0.94910 0.94548 0.78236 1.21486 1.45243 0.91542 0.99739 0.91850 1.25545 0.94050 1.02268 0.94900 1.70024 1.43284 1.37528 1.04196 0.85682 0.78371 0.80430 0.78067 1.19048 1.21430 1.19474 1.18400 0.82641 0.77583 0.87038 1.90680 1.79138 1.47949 1.28351 1.20051 0.95650 0.95168 0.95744 1.23050 0.99299 0.99826 0.95560 1.22689 0.89300 0.96123 0.93955 1.67127 1.27175 1.00579 1.30363 1.19494 0.90234 0.86794 0.91115 1.86279 1.48861 1.34910 1.50298 1.24060 0.89351 1.02536 0.84303 0.87753 1.23403 0.95739 1.00576 0.98586 1.23596 0.86059 1.04257 0.88725 1.88413 1.19993 1.79005 1.44366 1.23453 0.91610 0.97366 0.91465 1.20961 0.96998 1.00753 0.98670 0.86486 0.87621 0.88338 0.89226 0.90062 0.95505 0.96358 0.92292 0.81698 0.79648 0.86852 0.89040 0.86939 0.90168 0.91541 0.90825 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 14.32 67.78 0.97 -3.39 16 2 C -0.18 -5.90 9.85 25.64 0.25 -5.65 16 3 C 0.14 5.11 5.87 85.63 0.50 5.61 16 4 N -0.58 -23.99 2.44 -833.55 -2.04 -26.03 16 5 C 0.25 11.49 4.67 85.64 0.40 11.89 16 6 C -0.54 -25.43 6.52 25.60 0.17 -25.26 16 7 H 0.06 2.97 7.79 -2.91 -0.02 2.94 16 8 C 0.03 1.64 5.46 84.65 0.46 2.11 16 9 N -0.91 -47.03 13.29 21.45 0.28 -46.74 16 10 Si 0.95 38.03 29.54 68.60 2.03 40.05 16 11 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 12 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 14 C 0.56 23.43 7.28 86.88 0.63 24.06 16 15 O -0.58 -26.13 16.59 -3.77 -0.06 -26.20 16 16 C -0.06 -2.18 4.77 -19.90 -0.09 -2.27 16 17 C -0.16 -5.95 7.83 22.63 0.18 -5.77 16 18 C 0.13 4.45 11.17 84.62 0.94 5.40 16 19 N -0.53 -17.33 8.68 -309.14 -2.68 -20.02 16 20 C 0.30 10.12 7.48 84.80 0.63 10.75 16 21 O -0.30 -8.74 9.85 -90.06 -0.89 -9.63 16 22 C 0.05 1.30 3.19 31.86 0.10 1.40 16 23 H 0.10 2.53 7.14 -2.39 -0.02 2.51 16 24 C -0.15 -2.45 6.89 32.05 0.22 -2.23 16 25 C 0.05 0.78 7.78 72.65 0.56 1.34 16 26 O -0.40 -9.66 11.36 -148.98 -1.69 -11.35 16 27 C 0.04 0.98 7.58 72.45 0.55 1.53 16 28 C -0.15 -5.49 9.76 22.75 0.22 -5.26 16 29 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.11 2.68 7.84 -2.91 -0.02 2.66 16 31 H 0.10 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.09 3.13 7.75 -2.39 -0.02 3.11 16 33 H 0.08 2.91 7.38 -2.39 -0.02 2.89 16 34 H 0.03 1.32 5.94 -2.38 -0.01 1.31 16 35 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 36 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 37 H 0.17 6.73 4.91 -2.91 -0.01 6.72 16 38 H 0.19 5.12 8.06 -2.92 -0.02 5.10 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.82 8.05 -2.38 -0.02 1.80 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -58.45 379.67 2.65 -55.80 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.99 Total: 29.85 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.71 Total: 14.27 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.44 Total: -92.79 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.64 Total: -47.17 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.05 kcal Total: -58.45 2.65 -55.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292289388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.090 kcal (2) G-P(sol) polarization free energy of solvation -58.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds