Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00418 * 2 1 4 4 N 1.46908 * 109.47334 * 124.62071 * 3 2 1 5 5 C 1.46897 * 111.00049 * 199.67158 * 4 3 2 6 6 C 1.50700 * 109.47184 * 66.04530 * 5 4 3 7 7 H 1.08007 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47157 * 59.99693 * 10 8 6 12 12 H 1.48503 * 109.47384 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47093 * 300.00064 * 10 8 6 14 14 C 1.46895 * 110.99971 * 75.71481 * 4 3 2 15 15 C 1.50694 * 109.47528 * 199.97679 * 14 4 3 16 16 O 1.21294 * 119.99586 * 355.78816 * 15 14 4 17 17 N 1.34767 * 120.00668 * 175.79362 * 15 14 4 18 18 C 1.46496 * 120.00542 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.47420 * 179.97438 * 18 17 15 20 20 C 1.38247 * 119.92799 * 270.01592 * 19 18 17 21 21 C 1.38233 * 120.14531 * 179.74901 * 20 19 18 22 22 C 1.38548 * 120.02784 * 0.43032 * 21 20 19 23 23 C 1.39267 * 119.82422 * 359.57213 * 22 21 20 24 24 C 1.38238 * 119.92581 * 89.99710 * 19 18 17 25 25 O 1.36502 * 108.63917 * 180.24857 * 23 22 21 26 26 C 1.43987 * 105.48605 * 342.72011 * 25 23 22 27 27 O 1.36504 * 131.53349 * 179.88317 * 22 21 20 28 28 H 1.08000 * 120.00146 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99617 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99617 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47164 * 4.62402 * 3 2 1 32 32 H 1.08994 * 109.47296 * 244.62118 * 3 2 1 33 33 H 1.08997 * 109.46962 * 186.04719 * 5 4 3 34 34 H 1.08995 * 109.46967 * 306.04463 * 5 4 3 35 35 H 0.97003 * 120.00001 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46912 * 79.97359 * 14 4 3 37 37 H 1.09010 * 109.47190 * 319.97872 * 14 4 3 38 38 H 0.97006 * 119.99566 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47758 * 59.99310 * 18 17 15 40 40 H 1.09004 * 109.46850 * 299.99335 * 18 17 15 41 41 H 1.08009 * 119.92871 * 0.02562 * 20 19 18 42 42 H 1.07997 * 119.98897 * 180.33340 * 21 20 19 43 43 H 1.07990 * 119.99125 * 0.02562 * 24 19 18 44 44 H 1.08999 * 110.57207 * 268.55201 * 26 25 23 45 45 H 1.09003 * 110.57415 * 145.67746 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9900 1.3356 1.1398 5 6 3.3899 2.7132 1.4563 6 6 2.1917 3.4840 1.9473 7 1 1.2293 2.9989 2.0177 8 6 2.3240 4.8085 2.3067 9 7 3.4959 5.3991 2.2215 10 14 0.8388 5.7637 2.9161 11 1 0.2985 5.1130 4.1367 12 1 1.2431 7.1564 3.2359 13 1 -0.2057 5.7810 1.8607 14 6 4.1650 0.4914 0.8860 15 6 4.8288 0.1477 2.1945 16 8 4.4143 0.6266 3.2289 17 7 5.8829 -0.6916 2.2154 18 6 6.5279 -1.0262 3.4876 19 6 7.6709 -1.9759 3.2369 20 6 7.4502 -3.3405 3.2544 21 6 8.4943 -4.2156 3.0200 22 6 9.7673 -3.7265 2.7756 23 6 9.9896 -2.3517 2.7580 24 6 8.9375 -1.4805 2.9897 25 8 11.3096 -2.1266 2.4934 26 6 11.9728 -3.3778 2.7536 27 8 10.9481 -4.3626 2.5220 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3582 2.1319 0.0828 32 1 2.6267 1.3994 -0.9284 33 1 4.1561 2.7001 2.2314 34 1 3.7872 3.1910 0.5608 35 1 3.5890 6.3310 2.4740 36 1 4.8691 1.0299 0.2518 37 1 3.8526 -0.4252 0.3853 38 1 6.2142 -1.0749 1.3882 39 1 5.8022 -1.4983 4.1498 40 1 6.9066 -0.1162 3.9532 41 1 6.4590 -3.7237 3.4472 42 1 8.3180 -5.2810 3.0289 43 1 9.1071 -0.4141 2.9768 44 1 12.3186 -3.4205 3.7864 45 1 12.8046 -3.5212 2.0639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292318798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -33.532554 kcal Electronic energy + Delta-G solvation = -27363.011711 eV Core-core repulsion = 23347.841286 eV Total energy + Delta-G solvation = -4015.170425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51382 -39.50547 -38.38979 -36.64935 -36.58783 -34.41882 -33.07882 -32.19547 -31.23381 -30.65928 -28.34987 -26.90590 -26.33777 -25.32951 -23.77965 -23.31860 -22.16147 -20.97154 -20.03474 -19.10883 -18.29366 -17.99343 -17.72206 -16.92180 -16.40463 -16.30161 -15.70475 -15.25871 -14.82272 -14.76338 -14.70959 -14.38145 -14.20797 -13.88737 -13.83744 -13.54816 -13.33547 -13.26144 -13.11678 -12.57424 -12.25359 -12.20666 -12.03281 -11.68219 -11.44617 -11.30149 -11.22158 -11.06112 -10.71432 -10.60415 -10.21696 -9.86837 -9.39832 -9.21717 -9.06418 -8.88543 -8.80235 -8.40238 -8.32796 -7.22313 -5.92717 -3.92061 0.69041 0.85900 2.37187 2.73600 3.04071 3.07847 3.20827 3.40188 3.43931 3.47944 3.65605 4.10675 4.26852 4.38361 4.51449 4.55371 4.68409 4.80175 4.87232 5.07465 5.12824 5.29589 5.41004 5.41986 5.45078 5.61900 5.64531 5.71405 5.72909 5.77334 5.81155 5.85108 6.01713 6.11196 6.20521 6.28003 6.55357 6.62680 6.75019 7.04078 7.27637 7.33223 7.34781 7.75779 7.89837 8.19679 8.24421 8.58935 8.78255 9.13716 9.70274 11.18692 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002289 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.903267 B =12227.154839 C =13345.515263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C 0.083 3.917 4 N -0.515 5.515 5 C 0.194 3.806 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.037 3.963 15 C 0.511 3.489 16 O -0.496 6.496 17 N -0.741 5.741 18 C 0.167 3.833 19 C -0.091 4.091 20 C -0.089 4.089 21 C -0.102 4.102 22 C 0.033 3.967 23 C 0.029 3.971 24 C -0.081 4.081 25 O -0.308 6.308 26 C 0.213 3.787 27 O -0.310 6.310 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.044 0.956 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.396 0.604 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 -21.035 -1.857 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.152 4.152 3 C -0.045 4.045 4 N -0.240 5.240 5 C 0.070 3.930 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.095 4.095 15 C 0.297 3.703 16 O -0.368 6.368 17 N -0.398 5.398 18 C 0.043 3.957 19 C -0.091 4.091 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.011 4.011 23 C -0.015 4.015 24 C -0.100 4.100 25 O -0.224 6.224 26 C 0.101 3.899 27 O -0.227 6.227 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.004 0.996 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.102 0.898 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.427 -20.661 -0.760 24.652 hybrid contribution 0.361 0.569 -0.686 0.961 sum 13.788 -20.093 -1.446 24.411 Atomic orbital electron populations 1.23703 0.95973 1.01251 1.02746 1.22966 0.95951 0.98319 0.97918 1.21230 0.96117 0.95797 0.91312 1.61856 1.11814 1.14306 1.35975 1.19824 0.97400 0.80497 0.95285 1.21071 0.95313 0.94635 1.42809 0.91971 1.24958 0.95960 0.97719 0.95985 1.69950 1.22897 1.12091 1.49080 0.86582 0.82825 0.78693 0.79420 1.20167 1.21458 1.20361 1.21902 0.94722 0.99447 0.93434 1.20854 0.79250 0.78001 0.92232 1.90776 1.61876 1.49823 1.34277 1.46102 1.34095 1.50422 1.09145 1.20038 0.91457 0.97044 0.87141 1.19693 0.93627 0.94313 1.01504 1.20929 0.98819 0.91938 0.99122 1.20078 0.88443 1.01038 1.02488 1.19878 0.88936 0.89750 1.02540 1.19760 0.85513 0.93097 1.03154 1.20058 0.89487 0.99832 1.00613 1.87393 1.16523 1.34111 1.84386 1.25640 0.90283 0.71360 1.02590 1.87365 1.13694 1.36407 1.85200 0.89293 0.88525 0.88527 0.88604 0.95199 0.93838 0.99561 0.93025 0.92631 0.89527 0.77038 0.90285 0.90437 0.84010 0.84522 0.84251 0.89819 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 14.32 29.01 0.42 -2.55 16 2 C -0.13 -2.13 9.33 -36.03 -0.34 -2.46 16 3 C 0.08 1.58 5.24 -4.97 -0.03 1.56 16 4 N -0.52 -11.25 4.00 -238.97 -0.96 -12.20 16 5 C 0.19 5.21 4.33 -4.98 -0.02 5.19 16 6 C -0.50 -14.51 8.23 -34.44 -0.28 -14.79 16 7 H 0.06 1.79 7.31 -52.48 -0.38 1.41 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 10 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.04 0.63 5.29 -4.98 -0.03 0.61 16 15 C 0.51 9.05 7.56 -10.99 -0.08 8.97 16 16 O -0.50 -11.46 15.06 5.55 0.08 -11.38 16 17 N -0.74 -9.34 5.55 -61.47 -0.34 -9.69 16 18 C 0.17 1.91 5.79 -5.19 -0.03 1.88 16 19 C -0.09 -0.85 5.25 -104.62 -0.55 -1.40 16 20 C -0.09 -0.72 9.69 -39.58 -0.38 -1.10 16 21 C -0.10 -0.84 10.06 -39.47 -0.40 -1.24 16 22 C 0.03 0.33 7.15 -39.08 -0.28 0.05 16 23 C 0.03 0.31 7.15 -39.09 -0.28 0.03 16 24 C -0.08 -0.81 9.71 -39.47 -0.38 -1.19 16 25 O -0.31 -3.15 11.40 -45.70 -0.52 -3.67 16 26 C 0.21 1.47 8.89 101.05 0.90 2.36 16 27 O -0.31 -2.95 11.40 -45.70 -0.52 -3.47 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.48 7.84 -52.49 -0.41 1.07 16 30 H 0.10 1.36 7.28 -52.49 -0.38 0.98 16 31 H 0.10 2.05 6.23 -51.93 -0.32 1.73 16 32 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 33 H 0.04 1.30 6.60 -51.93 -0.34 0.95 16 34 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 37 H 0.09 1.19 6.81 -51.92 -0.35 0.83 16 38 H 0.40 3.89 8.46 -40.82 -0.35 3.54 16 39 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -36.07 382.66 -8.94 -45.01 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.31 Total: 1.68 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.86 Total: -2.59 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.56 Total: -48.71 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.96 Total: -18.52 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.07 -8.94 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292318798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.477 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds