Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00418 * 2 1 4 4 N 1.46908 * 109.47334 * 124.62071 * 3 2 1 5 5 C 1.46897 * 111.00049 * 199.67158 * 4 3 2 6 6 C 1.50700 * 109.47184 * 66.04530 * 5 4 3 7 7 H 1.08007 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47157 * 59.99693 * 10 8 6 12 12 H 1.48503 * 109.47384 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47093 * 300.00064 * 10 8 6 14 14 C 1.46895 * 110.99971 * 75.71481 * 4 3 2 15 15 C 1.50694 * 109.47528 * 199.97679 * 14 4 3 16 16 O 1.21294 * 119.99586 * 355.78816 * 15 14 4 17 17 N 1.34767 * 120.00668 * 175.79362 * 15 14 4 18 18 C 1.46496 * 120.00542 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.47420 * 179.97438 * 18 17 15 20 20 C 1.38247 * 119.92799 * 270.01592 * 19 18 17 21 21 C 1.38233 * 120.14531 * 179.74901 * 20 19 18 22 22 C 1.38548 * 120.02784 * 0.43032 * 21 20 19 23 23 C 1.39267 * 119.82422 * 359.57213 * 22 21 20 24 24 C 1.38238 * 119.92581 * 89.99710 * 19 18 17 25 25 O 1.36502 * 108.63917 * 180.24857 * 23 22 21 26 26 C 1.43987 * 105.48605 * 342.72011 * 25 23 22 27 27 O 1.36504 * 131.53349 * 179.88317 * 22 21 20 28 28 H 1.08000 * 120.00146 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99617 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99617 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47164 * 4.62402 * 3 2 1 32 32 H 1.08994 * 109.47296 * 244.62118 * 3 2 1 33 33 H 1.08997 * 109.46962 * 186.04719 * 5 4 3 34 34 H 1.08995 * 109.46967 * 306.04463 * 5 4 3 35 35 H 0.97003 * 120.00001 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46912 * 79.97359 * 14 4 3 37 37 H 1.09010 * 109.47190 * 319.97872 * 14 4 3 38 38 H 0.97006 * 119.99566 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47758 * 59.99310 * 18 17 15 40 40 H 1.09004 * 109.46850 * 299.99335 * 18 17 15 41 41 H 1.08009 * 119.92871 * 0.02562 * 20 19 18 42 42 H 1.07997 * 119.98897 * 180.33340 * 21 20 19 43 43 H 1.07990 * 119.99125 * 0.02562 * 24 19 18 44 44 H 1.08999 * 110.57207 * 268.55201 * 26 25 23 45 45 H 1.09003 * 110.57415 * 145.67746 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9900 1.3356 1.1398 5 6 3.3899 2.7132 1.4563 6 6 2.1917 3.4840 1.9473 7 1 1.2293 2.9989 2.0177 8 6 2.3240 4.8085 2.3067 9 7 3.4959 5.3991 2.2215 10 14 0.8388 5.7637 2.9161 11 1 0.2985 5.1130 4.1367 12 1 1.2431 7.1564 3.2359 13 1 -0.2057 5.7810 1.8607 14 6 4.1650 0.4914 0.8860 15 6 4.8288 0.1477 2.1945 16 8 4.4143 0.6266 3.2289 17 7 5.8829 -0.6916 2.2154 18 6 6.5279 -1.0262 3.4876 19 6 7.6709 -1.9759 3.2369 20 6 7.4502 -3.3405 3.2544 21 6 8.4943 -4.2156 3.0200 22 6 9.7673 -3.7265 2.7756 23 6 9.9896 -2.3517 2.7580 24 6 8.9375 -1.4805 2.9897 25 8 11.3096 -2.1266 2.4934 26 6 11.9728 -3.3778 2.7536 27 8 10.9481 -4.3626 2.5220 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3582 2.1319 0.0828 32 1 2.6267 1.3994 -0.9284 33 1 4.1561 2.7001 2.2314 34 1 3.7872 3.1910 0.5608 35 1 3.5890 6.3310 2.4740 36 1 4.8691 1.0299 0.2518 37 1 3.8526 -0.4252 0.3853 38 1 6.2142 -1.0749 1.3882 39 1 5.8022 -1.4983 4.1498 40 1 6.9066 -0.1162 3.9532 41 1 6.4590 -3.7237 3.4472 42 1 8.3180 -5.2810 3.0289 43 1 9.1071 -0.4141 2.9768 44 1 12.3186 -3.4205 3.7864 45 1 12.8046 -3.5212 2.0639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292318798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -59.770142 kcal Electronic energy + Delta-G solvation = -27364.149458 eV Core-core repulsion = 23347.841286 eV Total energy + Delta-G solvation = -4016.308172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.17795 -40.80671 -39.30234 -38.13949 -37.32733 -35.60235 -34.93110 -33.89597 -32.14214 -31.41588 -29.95018 -28.44943 -27.24355 -26.26572 -25.52886 -24.01668 -23.11818 -22.56894 -21.40737 -20.41162 -18.98696 -18.80588 -18.52843 -18.38627 -18.02249 -17.23527 -16.92547 -16.74489 -16.24675 -16.04369 -15.55748 -15.48142 -15.47900 -15.13158 -14.89984 -14.72021 -14.43060 -14.07685 -14.02488 -13.86538 -13.81143 -13.64876 -13.31588 -13.04891 -12.94118 -12.73641 -12.53036 -12.48134 -12.14067 -12.00302 -11.87602 -11.71015 -11.26148 -10.73647 -10.55484 -10.19469 -10.03759 -9.92038 -9.13172 -8.93398 -8.17340 -6.25248 -0.04652 0.15926 1.38776 1.43819 1.50012 1.51652 1.73821 1.81490 2.14806 2.42036 2.47536 2.67939 3.15426 3.41306 3.50470 3.60734 3.78102 3.96736 4.02993 4.06217 4.12124 4.16716 4.26556 4.33447 4.41295 4.44128 4.46702 4.62349 4.66220 4.75532 4.95570 4.96154 5.02617 5.07440 5.16541 5.23580 5.33757 5.35004 5.45904 5.51021 5.66240 5.80438 6.06421 6.06732 6.09773 6.38765 6.51408 6.75941 6.89075 7.42315 7.45974 8.94075 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002289 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.903267 B =12227.154839 C =13345.515263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.084 3.916 4 N -0.530 5.530 5 C 0.215 3.785 6 C -0.516 4.516 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.035 3.965 15 C 0.511 3.489 16 O -0.560 6.560 17 N -0.717 5.717 18 C 0.169 3.831 19 C -0.091 4.091 20 C -0.078 4.078 21 C -0.098 4.098 22 C 0.025 3.975 23 C 0.011 3.989 24 C -0.090 4.090 25 O -0.329 6.329 26 C 0.204 3.796 27 O -0.322 6.322 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.005 0.995 34 H -0.038 1.038 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.413 0.587 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 -23.644 -2.468 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.163 4.163 3 C -0.043 4.043 4 N -0.254 5.254 5 C 0.089 3.911 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.097 4.097 15 C 0.297 3.703 16 O -0.436 6.436 17 N -0.373 5.373 18 C 0.046 3.954 19 C -0.091 4.091 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.019 4.019 23 C -0.033 4.033 24 C -0.110 4.110 25 O -0.246 6.246 26 C 0.094 3.906 27 O -0.238 6.238 28 H 0.138 0.862 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.023 0.977 34 H -0.020 1.020 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.250 0.750 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.183 0.817 42 H 0.179 0.821 43 H 0.151 0.849 44 H 0.121 0.879 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.820 -23.330 -1.419 26.658 hybrid contribution 0.662 1.284 -0.525 1.537 sum 13.482 -22.046 -1.944 25.914 Atomic orbital electron populations 1.23927 0.95776 1.02230 1.00710 1.22905 0.96263 0.97466 0.99664 1.21195 0.95384 0.96888 0.90836 1.61680 1.14035 1.11682 1.38046 1.19339 0.95532 0.83382 0.92865 1.21398 0.95826 0.95349 1.42846 0.92352 1.25900 0.99102 0.98849 0.96046 1.70085 1.25127 1.12487 1.50017 0.85483 0.79223 0.77148 0.79051 1.19920 1.20719 1.18699 1.22057 0.93503 1.00419 0.93687 1.21002 0.79856 0.77900 0.91537 1.90752 1.64172 1.52504 1.36169 1.45867 1.32253 1.48527 1.10609 1.20015 0.92093 0.96879 0.86381 1.19430 0.92452 0.94577 1.02679 1.21151 0.99855 0.91003 0.97586 1.20384 0.87632 1.02307 1.01336 1.20166 0.89703 0.89560 1.02503 1.19898 0.85789 0.93651 1.03963 1.20077 0.89978 0.99716 1.01181 1.87355 1.16629 1.35891 1.84677 1.26115 0.90009 0.69737 1.04741 1.87337 1.13985 1.37193 1.85317 0.86184 0.89691 0.85746 0.91801 0.93913 0.97656 1.02005 0.92859 0.91807 0.85080 0.74994 0.89966 0.92250 0.81733 0.82102 0.84879 0.87918 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.18 14.32 67.78 0.97 -4.21 16 2 C -0.14 -4.30 9.33 25.64 0.24 -4.06 16 3 C 0.08 3.19 5.24 85.55 0.45 3.64 16 4 N -0.53 -23.45 4.00 -909.97 -3.64 -27.09 16 5 C 0.21 12.06 4.33 85.56 0.37 12.43 16 6 C -0.52 -30.98 8.23 25.60 0.21 -30.77 16 7 H 0.06 3.46 7.31 -2.91 -0.02 3.44 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.94 -59.16 13.29 21.45 0.28 -58.87 16 10 Si 0.97 46.66 29.54 68.60 2.03 48.69 16 11 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.03 1.16 5.29 85.56 0.45 1.61 16 15 C 0.51 18.16 7.56 87.66 0.66 18.83 16 16 O -0.56 -26.81 15.06 -3.07 -0.05 -26.86 16 17 N -0.72 -17.50 5.55 -466.79 -2.59 -20.09 16 18 C 0.17 3.84 5.79 85.64 0.50 4.34 16 19 C -0.09 -1.61 5.25 -19.86 -0.10 -1.71 16 20 C -0.08 -1.06 9.69 22.27 0.22 -0.84 16 21 C -0.10 -1.37 10.06 22.34 0.22 -1.15 16 22 C 0.03 0.46 7.15 22.59 0.16 0.63 16 23 C 0.01 0.23 7.15 22.59 0.16 0.39 16 24 C -0.09 -1.81 9.71 22.34 0.22 -1.59 16 25 O -0.33 -6.60 11.40 -76.08 -0.87 -7.46 16 26 C 0.20 2.53 8.89 113.37 1.01 3.54 16 27 O -0.32 -5.61 11.40 -76.10 -0.87 -6.48 16 28 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.08 2.51 7.84 -2.91 -0.02 2.49 16 30 H 0.12 3.01 7.28 -2.91 -0.02 2.99 16 31 H 0.06 2.80 6.23 -2.38 -0.01 2.78 16 32 H 0.04 1.48 8.00 -2.39 -0.02 1.46 16 33 H 0.01 0.34 6.60 -2.39 -0.02 0.32 16 34 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.06 2.06 7.99 -2.39 -0.02 2.04 16 37 H 0.13 3.18 6.81 -2.38 -0.02 3.16 16 38 H 0.41 7.32 8.46 -92.70 -0.78 6.53 16 39 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 40 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 41 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.13 2.72 8.06 -2.92 -0.02 2.70 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 45 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -82.40 382.66 0.72 -81.68 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.22 Total: 15.06 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.20 Total: 1.43 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.95 Total: -106.05 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.78 Total: -40.80 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.40 0.72 -81.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292318798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds