Wall clock time and date at job start Tue Mar 31 2020 17:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 N 1.46500 * 109.47451 * 124.99601 * 3 2 1 5 5 C 1.46496 * 120.00199 * 270.00156 * 4 3 2 6 6 C 1.50704 * 109.46987 * 269.99795 * 5 4 3 7 7 H 1.07999 * 119.99551 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46909 * 89.99935 * 10 8 6 12 12 H 1.48502 * 109.47227 * 210.00201 * 10 8 6 13 13 H 1.48506 * 109.47127 * 329.99994 * 10 8 6 14 14 C 1.34781 * 119.99529 * 89.99556 * 4 3 2 15 15 O 1.21285 * 119.99586 * 180.02562 * 14 4 3 16 16 C 1.50694 * 120.00527 * 0.02562 * 14 4 3 17 17 N 1.46493 * 109.47566 * 179.97438 * 16 14 4 18 18 C 1.34772 * 120.00563 * 180.02562 * 17 16 14 19 19 O 1.21516 * 119.99634 * 359.97438 * 18 17 16 20 20 O 1.34639 * 120.00599 * 180.02562 * 18 17 16 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 17 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 1.08000 * 119.99859 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00306 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99859 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47088 * 4.99169 * 3 2 1 32 32 H 1.09003 * 109.46775 * 245.00032 * 3 2 1 33 33 H 1.08995 * 109.47065 * 29.99575 * 5 4 3 34 34 H 1.09001 * 109.47124 * 149.99782 * 5 4 3 35 35 H 0.97002 * 120.00596 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47069 * 59.99476 * 16 14 4 37 37 H 1.09000 * 109.47229 * 300.00004 * 16 14 4 38 38 H 0.97006 * 119.99893 * 359.97438 * 17 16 14 39 39 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 40 40 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 45 45 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5183 4.0670 3.6080 9 7 2.7678 5.3572 3.6567 10 14 1.7224 3.2140 5.0670 11 1 2.7776 2.7229 5.9893 12 1 0.8458 4.1744 5.7841 13 1 0.9110 2.0664 4.5872 14 6 4.2497 0.8662 0.9824 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3182 -0.3481 17 7 6.0918 -0.1200 -0.2517 18 6 6.7083 -0.6478 -1.3276 19 8 6.1072 -0.7606 -2.3777 20 8 7.9898 -1.0511 -1.2389 21 6 8.5894 -1.6103 -2.4371 22 6 10.0159 -2.0020 -2.1492 23 6 10.3043 -3.2738 -1.6905 24 6 11.6128 -3.6332 -1.4270 25 6 12.6330 -2.7211 -1.6227 26 6 12.3440 -1.4477 -2.0763 27 6 11.0360 -1.0897 -2.3443 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4887 1.6968 2.5458 34 1 3.0989 1.3605 3.2260 35 1 2.5382 5.8662 4.4499 36 1 4.6126 1.0951 -1.1080 37 1 4.0681 -0.5285 -0.6226 38 1 6.5717 -0.0296 0.5865 39 1 8.5709 -0.8666 -3.2338 40 1 8.0265 -2.4903 -2.7484 41 1 9.5073 -3.9865 -1.5381 42 1 11.8381 -4.6266 -1.0682 43 1 13.6554 -3.0021 -1.4171 44 1 13.1405 -0.7337 -2.2250 45 1 10.8107 -0.0964 -2.7034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292448976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:57 Heat of formation + Delta-G solvation = -59.523415 kcal Electronic energy + Delta-G solvation = -27085.154730 eV Core-core repulsion = 23068.857257 eV Total energy + Delta-G solvation = -4016.297474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63560 -39.62151 -39.20960 -36.73473 -35.97526 -34.53333 -33.23732 -32.44088 -32.21397 -31.25768 -29.33027 -27.49872 -26.36887 -25.53668 -22.94238 -22.58530 -21.72767 -21.18387 -20.13175 -19.47693 -18.26657 -17.47070 -16.99880 -16.75210 -16.74460 -16.16932 -15.96296 -15.51147 -15.36514 -15.01952 -14.70678 -14.42735 -14.02828 -13.86109 -13.76130 -13.44505 -13.21637 -13.10170 -12.77685 -12.54402 -12.45459 -12.27726 -11.83571 -11.69661 -11.45751 -11.44212 -11.24030 -11.01321 -10.77657 -10.70103 -10.58060 -10.21176 -9.63898 -9.36518 -9.31706 -9.26561 -9.24631 -9.23338 -8.63839 -7.92649 -6.13476 -4.13215 0.79503 1.05999 2.12389 2.32651 2.76771 3.05937 3.26015 3.31952 3.33865 3.42852 3.71101 4.15950 4.35188 4.46018 4.51802 4.66736 4.72783 4.77658 4.90527 5.05557 5.09605 5.17093 5.19705 5.25103 5.29450 5.33710 5.38561 5.55212 5.59054 5.68429 5.90214 6.03466 6.06561 6.10229 6.15301 6.21111 6.32147 6.59375 6.61586 6.67106 6.78160 6.84860 7.17295 7.40748 7.53720 7.99923 8.29451 8.38343 8.67443 8.89480 9.45878 10.99621 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.002227 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.166660 B =12570.077584 C =13698.229441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.131 3.869 4 N -0.580 5.580 5 C 0.217 3.783 6 C -0.532 4.532 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.503 3.497 15 O -0.534 6.534 16 C 0.118 3.882 17 N -0.693 5.693 18 C 0.652 3.348 19 O -0.578 6.578 20 O -0.363 6.363 21 C 0.129 3.871 22 C -0.099 4.099 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.092 4.092 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.419 0.581 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -17.136 -13.448 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.007 3.993 4 N -0.311 5.311 5 C 0.097 3.903 6 C -0.570 4.570 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.289 3.711 15 O -0.411 6.411 16 C -0.009 4.009 17 N -0.355 5.355 18 C 0.404 3.596 19 O -0.468 6.468 20 O -0.277 6.277 21 C 0.055 3.945 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.110 4.110 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.258 0.742 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.232 -17.011 -13.349 24.366 hybrid contribution -0.302 -0.228 1.088 1.152 sum 10.930 -17.239 -12.261 23.811 Atomic orbital electron populations 1.23859 0.95816 1.01948 1.00029 1.23411 0.96499 0.98898 1.00371 1.20721 0.93321 0.95780 0.89439 1.47836 1.10195 1.59596 1.13443 1.19723 0.95141 0.95266 0.80149 1.21294 1.41490 0.90982 1.03244 0.90637 1.24844 0.95217 0.94723 0.98126 1.69888 1.47513 1.06601 1.29324 0.86865 0.79893 0.79690 0.83335 1.19884 1.21020 1.19011 1.20112 0.82837 0.78988 0.89161 1.90688 1.52331 1.56583 1.41517 1.21166 0.81095 1.01209 0.97398 1.44307 1.13177 1.64580 1.13432 1.17920 0.80439 0.77412 0.83813 1.90991 1.66298 1.60858 1.28604 1.86319 1.25740 1.75096 1.40556 1.21701 0.89243 0.98953 0.84595 1.19556 0.93436 0.94652 1.02238 1.21126 0.97011 0.95874 0.97109 1.21171 0.92701 0.99909 1.00506 1.21256 0.99399 0.93742 0.98398 1.21184 0.96517 0.96696 0.99814 1.21146 0.92553 0.98971 0.98371 0.88117 0.88629 0.87585 0.88713 0.90079 0.94847 0.94399 0.92482 0.88260 0.88483 0.74192 0.90089 0.90146 0.85678 0.85713 0.85857 0.85660 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 14.32 29.01 0.42 -1.66 16 2 C -0.17 -2.21 9.74 -36.03 -0.35 -2.56 16 3 C 0.13 1.94 5.65 -5.19 -0.03 1.91 16 4 N -0.58 -11.20 2.44 -176.43 -0.43 -11.63 16 5 C 0.22 5.10 4.23 -5.19 -0.02 5.07 16 6 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 7 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 10 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.50 9.55 7.74 -10.99 -0.09 9.46 16 15 O -0.53 -12.09 15.25 5.55 0.08 -12.01 16 16 C 0.12 1.74 4.71 -5.20 -0.02 1.72 16 17 N -0.69 -10.37 5.53 -66.47 -0.37 -10.74 16 18 C 0.65 9.71 8.75 54.05 0.47 10.18 16 19 O -0.58 -9.56 16.13 -19.28 -0.31 -9.87 16 20 O -0.36 -4.84 10.25 -40.32 -0.41 -5.25 16 21 C 0.13 1.37 5.60 36.01 0.20 1.57 16 22 C -0.10 -0.95 5.52 -104.62 -0.58 -1.53 16 23 C -0.09 -0.81 9.70 -39.58 -0.38 -1.19 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.11 -0.80 10.05 -39.58 -0.40 -1.20 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 27 C -0.09 -0.82 9.70 -39.58 -0.38 -1.21 16 28 H 0.10 1.14 7.84 -52.49 -0.41 0.73 16 29 H 0.10 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.11 1.26 7.83 -52.49 -0.41 0.85 16 31 H 0.09 1.47 7.72 -51.93 -0.40 1.06 16 32 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.10 1.38 7.40 -51.93 -0.38 1.00 16 37 H 0.10 1.26 7.78 -51.93 -0.40 0.85 16 38 H 0.42 6.43 7.55 -40.82 -0.31 6.12 16 39 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -34.42 390.41 -8.20 -42.62 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.35 Total: 6.16 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.40 Total: 4.73 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.02 Total: -48.72 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.64 Total: -27.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.42 -8.20 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292448976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.906 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds