Wall clock time and date at job start Tue Mar 31 2020 17:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 N 1.46500 * 109.47451 * 124.99601 * 3 2 1 5 5 C 1.46496 * 120.00199 * 270.00156 * 4 3 2 6 6 C 1.50704 * 109.46987 * 269.99795 * 5 4 3 7 7 H 1.07999 * 119.99551 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46909 * 89.99935 * 10 8 6 12 12 H 1.48502 * 109.47227 * 210.00201 * 10 8 6 13 13 H 1.48506 * 109.47127 * 329.99994 * 10 8 6 14 14 C 1.34781 * 119.99529 * 89.99556 * 4 3 2 15 15 O 1.21285 * 119.99586 * 180.02562 * 14 4 3 16 16 C 1.50694 * 120.00527 * 0.02562 * 14 4 3 17 17 N 1.46493 * 109.47566 * 179.97438 * 16 14 4 18 18 C 1.34772 * 120.00563 * 180.02562 * 17 16 14 19 19 O 1.21516 * 119.99634 * 359.97438 * 18 17 16 20 20 O 1.34639 * 120.00599 * 180.02562 * 18 17 16 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 17 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 1.08000 * 119.99859 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00306 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99859 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47088 * 4.99169 * 3 2 1 32 32 H 1.09003 * 109.46775 * 245.00032 * 3 2 1 33 33 H 1.08995 * 109.47065 * 29.99575 * 5 4 3 34 34 H 1.09001 * 109.47124 * 149.99782 * 5 4 3 35 35 H 0.97002 * 120.00596 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47069 * 59.99476 * 16 14 4 37 37 H 1.09000 * 109.47229 * 300.00004 * 16 14 4 38 38 H 0.97006 * 119.99893 * 359.97438 * 17 16 14 39 39 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 40 40 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 45 45 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5183 4.0670 3.6080 9 7 2.7678 5.3572 3.6567 10 14 1.7224 3.2140 5.0670 11 1 2.7776 2.7229 5.9893 12 1 0.8458 4.1744 5.7841 13 1 0.9110 2.0664 4.5872 14 6 4.2497 0.8662 0.9824 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3182 -0.3481 17 7 6.0918 -0.1200 -0.2517 18 6 6.7083 -0.6478 -1.3276 19 8 6.1072 -0.7606 -2.3777 20 8 7.9898 -1.0511 -1.2389 21 6 8.5894 -1.6103 -2.4371 22 6 10.0159 -2.0020 -2.1492 23 6 10.3043 -3.2738 -1.6905 24 6 11.6128 -3.6332 -1.4270 25 6 12.6330 -2.7211 -1.6227 26 6 12.3440 -1.4477 -2.0763 27 6 11.0360 -1.0897 -2.3443 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4887 1.6968 2.5458 34 1 3.0989 1.3605 3.2260 35 1 2.5382 5.8662 4.4499 36 1 4.6126 1.0951 -1.1080 37 1 4.0681 -0.5285 -0.6226 38 1 6.5717 -0.0296 0.5865 39 1 8.5709 -0.8666 -3.2338 40 1 8.0265 -2.4903 -2.7484 41 1 9.5073 -3.9865 -1.5381 42 1 11.8381 -4.6266 -1.0682 43 1 13.6554 -3.0021 -1.4171 44 1 13.1405 -0.7337 -2.2250 45 1 10.8107 -0.0964 -2.7034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292448976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:56 Heat of formation + Delta-G solvation = -81.923795 kcal Electronic energy + Delta-G solvation = -27086.126084 eV Core-core repulsion = 23068.857257 eV Total energy + Delta-G solvation = -4017.268827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77801 -40.88820 -40.05660 -37.83787 -37.36942 -35.79785 -35.00987 -33.78905 -33.14305 -31.84962 -30.98586 -28.84871 -27.28995 -26.87899 -24.35102 -23.54143 -22.66593 -22.15910 -21.25641 -20.68450 -19.61216 -19.07907 -18.39799 -17.83190 -17.74000 -17.52477 -17.19474 -16.68490 -16.26783 -16.08313 -15.96584 -15.75370 -15.44646 -14.80897 -14.67062 -14.50991 -14.35225 -14.19073 -14.07323 -13.89215 -13.63653 -13.49590 -13.32508 -13.07767 -12.90041 -12.50953 -12.26032 -12.13969 -12.08441 -11.94534 -11.83968 -11.73354 -11.70286 -10.92264 -10.82444 -10.47198 -10.31019 -9.87135 -9.86967 -9.54685 -8.33156 -6.38520 0.10154 0.45459 1.08288 1.33144 1.36345 1.37780 1.46161 1.54138 1.63347 2.28042 2.31552 2.78124 3.01328 3.21407 3.41164 3.71783 3.80400 4.03935 4.08511 4.14199 4.19742 4.22968 4.24512 4.26679 4.31780 4.45443 4.58211 4.69319 4.75885 4.82017 4.91247 4.97090 4.98966 5.08304 5.10685 5.23542 5.42364 5.46950 5.50252 5.56523 5.57337 5.73877 5.91280 6.03482 6.20167 6.22199 6.50503 6.63585 7.10432 7.13873 7.27882 8.83460 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.002227 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.166660 B =12570.077584 C =13698.229441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.186 4.186 3 C 0.126 3.874 4 N -0.586 5.586 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.032 0.968 8 C 0.012 3.988 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.276 1.276 12 H -0.277 1.277 13 H -0.237 1.237 14 C 0.499 3.501 15 O -0.578 6.578 16 C 0.130 3.870 17 N -0.696 5.696 18 C 0.656 3.344 19 O -0.595 6.595 20 O -0.368 6.368 21 C 0.127 3.873 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.417 0.583 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -19.578 -13.794 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.005 3.995 4 N -0.315 5.315 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.202 1.202 13 H -0.160 1.160 14 C 0.287 3.713 15 O -0.459 6.459 16 C 0.005 3.995 17 N -0.357 5.357 18 C 0.409 3.591 19 O -0.486 6.486 20 O -0.282 6.282 21 C 0.053 3.947 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.149 4.149 27 C -0.126 4.126 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.255 0.745 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.822 -19.477 -13.751 26.183 hybrid contribution -0.091 0.563 1.100 1.239 sum 10.730 -18.913 -12.651 25.158 Atomic orbital electron populations 1.24090 0.95487 1.03051 0.97695 1.23287 0.96837 0.97979 1.02401 1.20958 0.92924 0.96976 0.88689 1.47869 1.11262 1.59095 1.13306 1.19359 0.95760 0.92176 0.82165 1.21531 1.40614 0.93362 1.01899 0.94988 1.25816 0.95957 0.95331 1.01493 1.70041 1.49320 1.08508 1.30532 0.85755 0.79086 0.79393 0.78973 1.20162 1.20229 1.16036 1.20771 0.82175 0.78171 0.90169 1.90661 1.53468 1.58379 1.43371 1.21118 0.81444 1.02324 0.94652 1.44336 1.13290 1.64667 1.13455 1.17885 0.80795 0.77081 0.83329 1.90974 1.66842 1.61664 1.29094 1.86336 1.24856 1.74951 1.42043 1.21907 0.89887 0.99138 0.83743 1.19603 0.92915 0.95473 1.03742 1.21344 0.98033 0.95754 0.97174 1.21494 0.92281 1.01049 0.99983 1.21625 1.00630 0.93391 0.97337 1.21483 0.96519 0.97513 0.99413 1.21339 0.93157 0.99229 0.98830 0.88116 0.86442 0.86390 0.89760 0.87791 0.93100 0.95864 0.92291 0.87058 0.85833 0.74484 0.89857 0.89472 0.84845 0.83568 0.83435 0.83796 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 14.32 67.78 0.97 -2.36 16 2 C -0.19 -4.27 9.74 25.65 0.25 -4.02 16 3 C 0.13 3.58 5.65 85.63 0.48 4.06 16 4 N -0.59 -22.34 2.44 -830.50 -2.03 -24.37 16 5 C 0.23 10.60 4.23 85.63 0.36 10.96 16 6 C -0.54 -30.56 9.94 25.60 0.25 -30.30 16 7 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 8 C 0.01 0.71 5.47 84.66 0.46 1.17 16 9 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 10 Si 0.95 43.49 27.47 68.60 1.88 45.37 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 14 C 0.50 18.87 7.74 87.65 0.68 19.55 16 15 O -0.58 -26.70 15.25 -3.04 -0.05 -26.74 16 16 C 0.13 3.70 4.71 85.63 0.40 4.10 16 17 N -0.70 -20.47 5.53 -594.63 -3.29 -23.76 16 18 C 0.66 19.11 8.75 129.79 1.14 20.24 16 19 O -0.59 -19.02 16.13 19.79 0.32 -18.70 16 20 O -0.37 -9.72 10.25 -55.49 -0.57 -10.29 16 21 C 0.13 2.65 5.60 71.24 0.40 3.05 16 22 C -0.12 -2.22 5.52 -19.86 -0.11 -2.33 16 23 C -0.10 -1.73 9.70 22.27 0.22 -1.52 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.11 -1.42 10.05 22.27 0.22 -1.20 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 27 C -0.11 -1.87 9.70 22.27 0.22 -1.65 16 28 H 0.10 2.02 7.84 -2.91 -0.02 2.00 16 29 H 0.12 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.12 2.44 7.83 -2.91 -0.02 2.42 16 31 H 0.08 2.55 7.72 -2.39 -0.02 2.53 16 32 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 33 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 34 H 0.02 1.16 6.85 -2.39 -0.02 1.14 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.11 2.93 7.40 -2.39 -0.02 2.92 16 37 H 0.12 2.89 7.78 -2.39 -0.02 2.88 16 38 H 0.42 12.88 7.55 -92.70 -0.70 12.18 16 39 H 0.08 1.66 8.08 -2.38 -0.02 1.64 16 40 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -76.35 390.41 3.21 -73.14 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.24 Total: 27.32 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.39 Total: 16.57 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -5.02 Total: -106.67 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.30 Total: -55.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -76.35 3.21 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292448976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.783 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds