Wall clock time and date at job start Tue Mar 31 2020 17:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00292 * 2 1 4 4 N 1.46501 * 109.47357 * 124.99644 * 3 2 1 5 5 C 1.46501 * 119.99777 * 269.99957 * 4 3 2 6 6 C 1.50701 * 109.47418 * 270.00141 * 5 4 3 7 7 H 1.08004 * 119.99685 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99908 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99985 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99660 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47215 * 59.99668 * 10 8 6 12 12 H 1.48504 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47069 * 299.99405 * 10 8 6 14 14 C 1.34766 * 119.99974 * 90.00224 * 4 3 2 15 15 O 1.21286 * 120.00017 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00076 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47080 * 179.97438 * 16 14 4 18 18 O 1.42904 * 109.47254 * 179.97438 * 17 16 14 19 19 C 1.35710 * 117.00085 * 180.02562 * 18 17 16 20 20 C 1.39004 * 119.90917 * 180.02562 * 19 18 17 21 21 C 1.37696 * 120.08537 * 180.02562 * 20 19 18 22 22 C 1.39738 * 119.91323 * 359.97438 * 21 20 19 23 23 C 1.47600 * 120.08720 * 180.02562 * 22 21 20 24 24 N 1.34784 * 119.99996 * 180.02562 * 23 22 21 25 25 O 1.21588 * 120.00146 * 359.97438 * 23 22 21 26 26 C 1.39735 * 119.82583 * 0.27592 * 22 21 20 27 27 C 1.37708 * 119.90544 * 359.46580 * 26 22 21 28 28 H 1.07998 * 120.00121 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00131 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46863 * 4.99738 * 3 2 1 32 32 H 1.08995 * 109.47041 * 245.00309 * 3 2 1 33 33 H 1.09003 * 109.47215 * 30.00123 * 5 4 3 34 34 H 1.09005 * 109.46710 * 150.00175 * 5 4 3 35 35 H 0.97004 * 119.99565 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47301 * 60.00289 * 16 14 4 37 37 H 1.09004 * 109.46786 * 299.99757 * 16 14 4 38 38 H 1.09010 * 109.47296 * 60.00200 * 17 16 14 39 39 H 1.08996 * 109.47296 * 299.99859 * 17 16 14 40 40 H 1.07995 * 119.95399 * 0.02562 * 20 19 18 41 41 H 1.08001 * 120.04377 * 179.97438 * 21 20 19 42 42 H 0.97000 * 119.99339 * 359.97438 * 24 23 22 43 43 H 0.96995 * 120.00015 * 179.72403 * 24 23 22 44 44 H 1.07997 * 120.04683 * 179.73081 * 26 22 21 45 45 H 1.07996 * 119.95407 * 180.24853 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3032 3.8372 1.6364 8 6 2.5191 4.0667 3.6085 9 7 1.9597 3.4659 4.6359 10 14 2.8722 5.8997 3.6770 11 1 2.1356 6.5868 2.5859 12 1 2.4314 6.4401 4.9880 13 1 4.3299 6.1295 3.5113 14 6 4.2496 0.8662 0.9825 15 8 5.0199 0.8889 1.9191 16 6 4.6972 0.3184 -0.3482 17 6 6.1537 -0.1393 -0.2474 18 8 6.5780 -0.6593 -1.5090 19 6 7.8547 -1.1121 -1.5908 20 6 8.3309 -1.6301 -2.7896 21 6 9.6255 -2.0910 -2.8766 22 6 10.4611 -2.0369 -1.7579 23 6 11.8497 -2.5293 -1.8470 24 7 12.6540 -2.4767 -0.7667 25 8 12.2678 -2.9832 -2.8946 26 6 9.9770 -1.5202 -0.5532 27 6 8.6827 -1.0564 -0.4758 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4886 1.6968 2.5459 34 1 3.0989 1.3604 3.2260 35 1 1.7307 3.9747 5.4295 36 1 4.6127 1.0953 -1.1080 37 1 4.0681 -0.5284 -0.6226 38 1 6.2387 -0.9162 0.5126 39 1 6.7825 0.7077 0.0269 40 1 7.6846 -1.6712 -3.6539 41 1 9.9947 -2.4937 -3.8083 42 1 12.3203 -2.1150 0.0692 43 1 13.5653 -2.8040 -0.8241 44 1 10.6184 -1.4807 0.3148 45 1 8.3090 -0.6532 0.4537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292497396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:13 Heat of formation + Delta-G solvation = -68.193667 kcal Electronic energy + Delta-G solvation = -27004.750922 eV Core-core repulsion = 22988.077479 eV Total energy + Delta-G solvation = -4016.673444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68466 -39.67663 -39.10354 -37.25539 -35.80425 -34.14753 -33.33686 -32.27100 -31.97223 -31.24293 -30.01888 -27.72955 -25.69389 -24.87199 -23.84849 -22.96510 -21.84613 -20.74765 -20.00935 -18.97972 -18.38955 -17.92566 -17.15630 -16.66578 -16.35863 -16.28115 -15.78672 -15.43163 -15.30938 -15.02581 -14.78166 -14.48065 -14.42786 -14.08689 -13.80882 -13.51942 -13.41474 -12.83327 -12.80202 -12.57386 -12.32282 -11.87070 -11.85096 -11.70820 -11.32234 -11.12013 -11.02997 -10.96318 -10.81840 -10.63982 -10.37658 -10.25125 -10.05222 -9.73340 -9.39209 -9.25418 -9.11246 -8.51911 -8.49026 -7.81495 -6.10252 -4.15486 0.62197 1.03279 2.38186 2.59257 2.81421 3.20834 3.22814 3.27662 3.32346 3.35841 3.57976 3.99111 4.36672 4.39656 4.53635 4.61340 4.77747 4.89744 4.92990 4.99952 5.08678 5.18019 5.24368 5.30873 5.32284 5.43131 5.58055 5.61519 5.71343 5.76340 5.86722 5.96014 5.98485 6.02030 6.12876 6.35715 6.45639 6.73569 6.83775 6.98611 6.98942 7.12728 7.35756 7.43707 7.85216 7.93675 8.15849 8.26592 8.78913 8.94243 9.49649 10.97833 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002215 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.272457 B =12640.626547 C =14065.543578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.589 5.589 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.511 3.489 15 O -0.543 6.543 16 C -0.141 4.141 17 C 0.073 3.927 18 O -0.312 6.312 19 C 0.169 3.831 20 C -0.164 4.164 21 C -0.019 4.019 22 C -0.190 4.190 23 C 0.570 3.430 24 N -0.854 5.854 25 O -0.548 6.548 26 C -0.041 4.041 27 C -0.217 4.217 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.401 0.599 43 H 0.404 0.596 44 H 0.128 0.872 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -11.068 -12.510 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.297 3.703 15 O -0.421 6.421 16 C -0.181 4.181 17 C -0.002 4.002 18 O -0.224 6.224 19 C 0.122 3.878 20 C -0.183 4.183 21 C -0.038 4.038 22 C -0.194 4.194 23 C 0.357 3.643 24 N -0.418 5.418 25 O -0.426 6.426 26 C -0.060 4.060 27 C -0.236 4.236 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.231 0.769 43 H 0.235 0.765 44 H 0.146 0.854 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.672 -11.233 -12.672 20.016 hybrid contribution 0.268 1.139 0.845 1.443 sum 10.940 -10.094 -11.827 19.012 Atomic orbital electron populations 1.23831 0.95853 1.01827 1.00307 1.23404 0.96429 0.98950 1.00143 1.20634 0.93190 0.95495 0.89668 1.48205 1.10258 1.59683 1.13812 1.19306 0.95503 0.93797 0.78537 1.21375 1.40860 0.93255 1.01281 0.92487 1.24932 0.94998 0.98798 0.95321 1.69921 1.41800 1.36323 1.05190 0.86558 0.78831 0.84818 0.77210 1.20220 1.21152 1.20171 1.19938 0.82693 0.78825 0.88842 1.90690 1.52557 1.56809 1.42053 1.21577 0.95191 1.03078 0.98284 1.22611 0.95560 0.99293 0.82746 1.85972 1.25450 1.74757 1.36254 1.19320 0.83579 0.90973 0.93925 1.20439 0.96449 1.04627 0.96783 1.21037 0.91460 0.93331 0.97946 1.19717 0.94600 1.09319 0.95743 1.18194 0.85533 0.77258 0.83322 1.43767 1.16776 1.67142 1.14077 1.90811 1.76173 1.46472 1.29159 1.21059 0.94927 0.93765 0.96241 1.21367 0.95276 1.07543 0.99410 0.88732 0.88245 0.87748 0.89291 0.90560 0.94827 0.93827 0.92605 0.88189 0.88353 0.90718 0.90559 0.84312 0.84047 0.76940 0.76550 0.85377 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.25 9.74 -36.02 -0.35 -2.60 16 3 C 0.13 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.59 -11.65 2.44 -176.43 -0.43 -12.08 16 5 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 6 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.51 9.69 7.67 -10.99 -0.08 9.60 16 15 O -0.54 -12.52 15.56 5.55 0.09 -12.44 16 16 C -0.14 -1.88 4.62 -27.88 -0.13 -2.01 16 17 C 0.07 0.93 4.02 37.16 0.15 1.08 16 18 O -0.31 -3.75 10.12 -18.83 -0.19 -3.94 16 19 C 0.17 1.89 6.70 -39.02 -0.26 1.63 16 20 C -0.16 -1.65 9.97 -39.50 -0.39 -2.04 16 21 C -0.02 -0.19 9.58 -39.22 -0.38 -0.56 16 22 C -0.19 -1.89 5.88 -104.96 -0.62 -2.51 16 23 C 0.57 5.86 8.04 -12.44 -0.10 5.76 16 24 N -0.85 -5.26 8.82 30.47 0.27 -4.99 16 25 O -0.55 -7.64 17.18 5.29 0.09 -7.55 16 26 C -0.04 -0.36 9.53 -39.22 -0.37 -0.73 16 27 C -0.22 -2.23 9.01 -39.50 -0.36 -2.58 16 28 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 30 H 0.10 1.28 7.83 -52.48 -0.41 0.87 16 31 H 0.09 1.41 7.72 -51.92 -0.40 1.01 16 32 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 37 H 0.10 1.12 7.78 -51.93 -0.40 0.71 16 38 H 0.07 0.96 7.61 -51.92 -0.40 0.56 16 39 H 0.08 1.02 7.61 -51.93 -0.40 0.62 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.14 1.33 7.64 -52.49 -0.40 0.92 16 42 H 0.40 1.47 6.85 -40.82 -0.28 1.19 16 43 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16 44 H 0.13 0.70 6.39 -52.49 -0.34 0.37 16 45 H 0.14 1.41 6.28 -52.49 -0.33 1.08 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -34.87 387.07 -7.62 -42.49 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.04 Total: 3.36 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.95 Total: -1.75 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.57 Total: -42.31 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.01 Total: -23.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.87 -7.62 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.701 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds