Wall clock time and date at job start Tue Mar 31 2020 17:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00292 * 2 1 4 4 N 1.46501 * 109.47357 * 124.99644 * 3 2 1 5 5 C 1.46501 * 119.99777 * 269.99957 * 4 3 2 6 6 C 1.50701 * 109.47418 * 270.00141 * 5 4 3 7 7 H 1.08004 * 119.99685 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99908 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99985 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99660 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47215 * 59.99668 * 10 8 6 12 12 H 1.48504 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47069 * 299.99405 * 10 8 6 14 14 C 1.34766 * 119.99974 * 90.00224 * 4 3 2 15 15 O 1.21286 * 120.00017 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00076 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47080 * 179.97438 * 16 14 4 18 18 O 1.42904 * 109.47254 * 179.97438 * 17 16 14 19 19 C 1.35710 * 117.00085 * 180.02562 * 18 17 16 20 20 C 1.39004 * 119.90917 * 180.02562 * 19 18 17 21 21 C 1.37696 * 120.08537 * 180.02562 * 20 19 18 22 22 C 1.39738 * 119.91323 * 359.97438 * 21 20 19 23 23 C 1.47600 * 120.08720 * 180.02562 * 22 21 20 24 24 N 1.34784 * 119.99996 * 180.02562 * 23 22 21 25 25 O 1.21588 * 120.00146 * 359.97438 * 23 22 21 26 26 C 1.39735 * 119.82583 * 0.27592 * 22 21 20 27 27 C 1.37708 * 119.90544 * 359.46580 * 26 22 21 28 28 H 1.07998 * 120.00121 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00131 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46863 * 4.99738 * 3 2 1 32 32 H 1.08995 * 109.47041 * 245.00309 * 3 2 1 33 33 H 1.09003 * 109.47215 * 30.00123 * 5 4 3 34 34 H 1.09005 * 109.46710 * 150.00175 * 5 4 3 35 35 H 0.97004 * 119.99565 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47301 * 60.00289 * 16 14 4 37 37 H 1.09004 * 109.46786 * 299.99757 * 16 14 4 38 38 H 1.09010 * 109.47296 * 60.00200 * 17 16 14 39 39 H 1.08996 * 109.47296 * 299.99859 * 17 16 14 40 40 H 1.07995 * 119.95399 * 0.02562 * 20 19 18 41 41 H 1.08001 * 120.04377 * 179.97438 * 21 20 19 42 42 H 0.97000 * 119.99339 * 359.97438 * 24 23 22 43 43 H 0.96995 * 120.00015 * 179.72403 * 24 23 22 44 44 H 1.07997 * 120.04683 * 179.73081 * 26 22 21 45 45 H 1.07996 * 119.95407 * 180.24853 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3032 3.8372 1.6364 8 6 2.5191 4.0667 3.6085 9 7 1.9597 3.4659 4.6359 10 14 2.8722 5.8997 3.6770 11 1 2.1356 6.5868 2.5859 12 1 2.4314 6.4401 4.9880 13 1 4.3299 6.1295 3.5113 14 6 4.2496 0.8662 0.9825 15 8 5.0199 0.8889 1.9191 16 6 4.6972 0.3184 -0.3482 17 6 6.1537 -0.1393 -0.2474 18 8 6.5780 -0.6593 -1.5090 19 6 7.8547 -1.1121 -1.5908 20 6 8.3309 -1.6301 -2.7896 21 6 9.6255 -2.0910 -2.8766 22 6 10.4611 -2.0369 -1.7579 23 6 11.8497 -2.5293 -1.8470 24 7 12.6540 -2.4767 -0.7667 25 8 12.2678 -2.9832 -2.8946 26 6 9.9770 -1.5202 -0.5532 27 6 8.6827 -1.0564 -0.4758 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4886 1.6968 2.5459 34 1 3.0989 1.3604 3.2260 35 1 1.7307 3.9747 5.4295 36 1 4.6127 1.0953 -1.1080 37 1 4.0681 -0.5284 -0.6226 38 1 6.2387 -0.9162 0.5126 39 1 6.7825 0.7077 0.0269 40 1 7.6846 -1.6712 -3.6539 41 1 9.9947 -2.4937 -3.8083 42 1 12.3203 -2.1150 0.0692 43 1 13.5653 -2.8040 -0.8241 44 1 10.6184 -1.4807 0.3148 45 1 8.3090 -0.6532 0.4537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292497396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:12 Heat of formation + Delta-G solvation = -92.269414 kcal Electronic energy + Delta-G solvation = -27005.794925 eV Core-core repulsion = 22988.077479 eV Total energy + Delta-G solvation = -4017.717447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52656 -40.85693 -40.23542 -38.11315 -37.25205 -35.16052 -34.86360 -33.66923 -33.20546 -32.02482 -30.89970 -29.51013 -26.94983 -26.24086 -24.72904 -24.33333 -22.97512 -21.53669 -21.11550 -20.03246 -19.48414 -18.83036 -18.59845 -17.91316 -17.62166 -17.43440 -17.20571 -16.52040 -16.18959 -16.12635 -16.04812 -15.79412 -15.51903 -15.10804 -14.62265 -14.57796 -14.38032 -14.32375 -14.06566 -13.83620 -13.57780 -13.34695 -12.98399 -12.97719 -12.80535 -12.73370 -12.53258 -12.22822 -12.18571 -11.84901 -11.79360 -11.68291 -11.22784 -10.72977 -10.70581 -10.63817 -10.29554 -10.13956 -9.49069 -9.33589 -8.21981 -6.36490 -0.16660 0.28625 1.32964 1.38028 1.41205 1.48598 1.74832 1.80043 1.83192 2.37067 2.56262 2.66211 2.81012 3.08148 3.57405 3.72448 3.77619 3.91413 3.91526 3.93768 4.10360 4.13833 4.25290 4.35163 4.40068 4.47290 4.57246 4.72407 4.72899 4.87924 4.92691 5.02623 5.07676 5.07804 5.21148 5.23580 5.29721 5.51310 5.59732 5.73364 5.76468 5.87358 5.96306 6.06209 6.24873 6.39969 6.67510 6.75913 7.26781 7.27804 7.42296 8.85001 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002215 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.272457 B =12640.626547 C =14065.543578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.184 4.184 3 C 0.131 3.869 4 N -0.595 5.595 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.504 3.496 15 O -0.593 6.593 16 C -0.125 4.125 17 C 0.080 3.920 18 O -0.312 6.312 19 C 0.150 3.850 20 C -0.163 4.163 21 C -0.026 4.026 22 C -0.197 4.197 23 C 0.567 3.433 24 N -0.832 5.832 25 O -0.591 6.591 26 C -0.033 4.033 27 C -0.226 4.226 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.021 0.979 34 H -0.001 1.001 35 H 0.267 0.733 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.153 0.847 41 H 0.144 0.856 42 H 0.415 0.585 43 H 0.413 0.587 44 H 0.161 0.839 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.758 -10.889 -13.844 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.203 4.203 3 C 0.009 3.991 4 N -0.325 5.325 5 C 0.143 3.857 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.293 3.707 15 O -0.475 6.475 16 C -0.164 4.164 17 C 0.005 3.995 18 O -0.225 6.225 19 C 0.103 3.897 20 C -0.182 4.182 21 C -0.045 4.045 22 C -0.201 4.201 23 C 0.354 3.646 24 N -0.397 5.397 25 O -0.473 6.473 26 C -0.052 4.052 27 C -0.245 4.245 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.248 0.752 43 H 0.245 0.755 44 H 0.178 0.822 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.004 -11.059 -14.017 20.973 hybrid contribution 0.178 1.026 1.280 1.650 sum 11.182 -10.033 -12.737 19.695 Atomic orbital electron populations 1.24048 0.95693 1.02791 0.98441 1.23350 0.96762 0.98405 1.01751 1.20878 0.92798 0.96311 0.89134 1.48173 1.11646 1.59483 1.13215 1.18706 0.93909 0.92697 0.80389 1.21679 1.40630 0.94423 1.01359 0.92637 1.25839 0.94707 1.03631 0.94930 1.70045 1.42758 1.38161 1.05788 0.85501 0.78560 0.79167 0.77797 1.18561 1.20559 1.20184 1.20874 0.81698 0.77757 0.90400 1.90660 1.53817 1.58702 1.44331 1.21452 0.95806 1.04427 0.94749 1.22410 0.95092 0.98885 0.83162 1.85931 1.26075 1.75067 1.35431 1.19544 0.83460 0.91913 0.94738 1.20573 0.96571 1.04095 0.96918 1.21172 0.91619 0.93404 0.98336 1.19850 0.94602 1.09403 0.96210 1.18295 0.85882 0.76904 0.83486 1.43607 1.16770 1.65662 1.13628 1.90792 1.76931 1.48681 1.30920 1.21331 0.94683 0.92301 0.96849 1.21487 0.95909 1.07881 0.99229 0.86668 0.88446 0.86467 0.90526 0.87121 0.96121 0.98305 0.92440 0.85914 0.85594 0.91175 0.91555 0.82894 0.83814 0.75242 0.75513 0.82186 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 14.32 67.78 0.97 -2.90 16 2 C -0.18 -4.53 9.74 25.65 0.25 -4.28 16 3 C 0.13 3.77 5.65 85.63 0.48 4.25 16 4 N -0.60 -23.66 2.44 -830.48 -2.03 -25.69 16 5 C 0.26 13.78 5.16 85.63 0.44 14.22 16 6 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 7 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 10 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 11 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 C 0.50 19.08 7.67 87.66 0.67 19.76 16 15 O -0.59 -28.25 15.56 -3.05 -0.05 -28.30 16 16 C -0.12 -3.07 4.62 29.85 0.14 -2.94 16 17 C 0.08 1.95 4.02 71.98 0.29 2.24 16 18 O -0.31 -7.00 10.12 -90.31 -0.91 -7.92 16 19 C 0.15 3.18 6.70 22.63 0.15 3.33 16 20 C -0.16 -3.06 9.97 22.33 0.22 -2.84 16 21 C -0.03 -0.51 9.58 22.50 0.22 -0.29 16 22 C -0.20 -3.66 5.88 -20.08 -0.12 -3.78 16 23 C 0.57 10.99 8.04 86.71 0.70 11.68 16 24 N -0.83 -8.58 8.82 -175.75 -1.55 -10.13 16 25 O -0.59 -16.30 17.18 -3.99 -0.07 -16.37 16 26 C -0.03 -0.52 9.53 22.51 0.21 -0.30 16 27 C -0.23 -4.38 9.01 22.33 0.20 -4.18 16 28 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.10 2.22 7.84 -2.91 -0.02 2.20 16 30 H 0.12 2.59 7.83 -2.91 -0.02 2.57 16 31 H 0.08 2.39 7.72 -2.38 -0.02 2.37 16 32 H 0.11 2.39 6.44 -2.39 -0.02 2.38 16 33 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 34 H 0.00 -0.07 7.42 -2.38 -0.02 -0.09 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.12 2.52 7.40 -2.39 -0.02 2.50 16 37 H 0.13 2.46 7.78 -2.39 -0.02 2.44 16 38 H 0.07 1.77 7.61 -2.38 -0.02 1.75 16 39 H 0.07 1.75 7.61 -2.39 -0.02 1.73 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.14 2.65 7.64 -2.91 -0.02 2.62 16 42 H 0.42 1.91 6.85 -92.71 -0.64 1.27 16 43 H 0.41 3.20 8.93 -92.71 -0.83 2.37 16 44 H 0.16 1.31 6.39 -2.91 -0.02 1.29 16 45 H 0.14 2.72 6.28 -2.91 -0.02 2.70 16 Total: -1.00 -78.50 387.07 2.81 -75.69 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.43 Total: 16.89 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.53 Total: 4.84 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -3.29 Total: -90.70 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -1.03 Total: -52.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -78.50 2.81 -75.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.580 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds