Wall clock time and date at job start Tue Mar 31 2020 18:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46873 * 2 1 4 4 N 1.46503 * 109.47323 * 119.99646 * 2 1 3 5 5 C 1.34774 * 120.00204 * 155.00021 * 4 2 1 6 6 O 1.21533 * 119.99571 * 0.02562 * 5 4 2 7 7 C 1.48030 * 120.00110 * 180.02562 * 5 4 2 8 8 C 1.39551 * 120.00033 * 179.97438 * 7 5 4 9 9 C 1.37824 * 120.00096 * 180.02562 * 8 7 5 10 10 C 1.39558 * 119.99797 * 0.02562 * 9 8 7 11 11 C 1.48036 * 119.99714 * 179.97438 * 10 9 8 12 12 O 1.21524 * 119.99769 * 171.44012 * 11 10 9 13 13 N 1.34776 * 119.99893 * 351.44549 * 11 10 9 14 14 C 1.47585 * 134.48896 * 181.74116 * 13 11 10 15 15 C 1.53944 * 86.11677 * 155.35585 * 14 13 11 16 16 O 1.42899 * 113.73979 * 269.15273 * 15 14 13 17 17 C 1.50693 * 113.74437 * 137.95285 * 15 14 13 18 18 H 1.08007 * 119.99880 * 17.14417 * 17 15 14 19 19 C 1.37876 * 120.00381 * 197.14391 * 17 15 14 20 20 N 1.31509 * 120.00556 * 191.76660 * 19 17 15 21 21 Si 1.86804 * 119.99738 * 11.77123 * 19 17 15 22 22 H 1.48496 * 109.47275 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47227 * 299.99828 * 21 19 17 24 24 H 1.48507 * 109.47113 * 59.99967 * 21 19 17 25 25 C 1.47809 * 134.46153 * 1.60157 * 13 11 10 26 26 C 1.39550 * 120.00208 * 0.27124 * 10 9 8 27 27 C 1.37829 * 119.99794 * 359.44801 * 26 10 9 28 28 H 1.08998 * 109.47762 * 299.99770 * 1 2 3 29 29 H 1.09003 * 109.47375 * 60.00291 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47432 * 239.99874 * 2 1 3 32 32 H 1.09004 * 109.46794 * 60.00045 * 3 2 1 33 33 H 1.09002 * 109.46969 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47198 * 300.00047 * 3 2 1 35 35 H 0.96996 * 119.99662 * 335.00943 * 4 2 1 36 36 H 1.07998 * 120.00285 * 0.02562 * 8 7 5 37 37 H 1.08006 * 119.99977 * 180.02562 * 9 8 7 38 38 H 1.09001 * 113.76823 * 41.05241 * 14 13 11 39 39 H 1.09002 * 113.76562 * 269.65419 * 14 13 11 40 40 H 0.96707 * 114.00420 * 177.00813 * 16 15 14 41 41 H 0.97005 * 119.99896 * 354.87895 * 20 19 17 42 42 H 1.09002 * 113.76706 * 90.37795 * 25 13 11 43 43 H 1.09005 * 113.83620 * 318.92050 * 25 13 11 44 44 H 1.07992 * 120.00238 * 179.72635 * 26 10 9 45 45 H 1.07997 * 120.00013 * 180.27371 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9372 -1.1985 0.2007 7 6 3.7335 -1.9573 2.4030 8 6 4.9986 -2.5464 2.4010 9 6 5.4576 -3.1970 3.5260 10 6 4.6570 -3.2670 4.6670 11 6 5.1499 -3.9662 5.8751 12 8 4.5252 -3.8958 6.9152 13 7 6.2913 -4.6808 5.8216 14 6 7.0405 -5.5070 6.7881 15 6 7.6171 -6.2346 5.5600 16 8 6.8517 -7.3704 5.1524 17 6 9.0917 -6.5268 5.6649 18 1 9.5827 -6.4893 6.6262 19 6 9.8142 -6.8421 4.5337 20 7 11.0344 -7.3200 4.6446 21 14 9.0600 -6.5902 2.8434 22 1 10.0338 -7.0015 1.8005 23 1 7.8288 -7.4118 2.7232 24 1 8.7179 -5.1564 2.6626 25 6 7.2938 -4.9534 4.7702 26 6 3.3895 -2.6832 4.6669 27 6 2.9328 -2.0276 3.5438 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.4621 -0.7387 1.9894 36 1 5.6179 -2.4926 1.5179 37 1 6.4368 -3.6526 3.5246 38 1 6.4063 -6.1354 7.4134 39 1 7.7843 -4.9503 7.3582 40 1 7.1846 -7.8032 4.3543 41 1 11.4538 -7.3812 5.5172 42 1 8.1121 -4.2337 4.7462 43 1 6.8614 -5.1407 3.7872 44 1 2.7682 -2.7412 5.5483 45 1 1.9536 -1.5720 3.5453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331966662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:50 Heat of formation + Delta-G solvation = -46.113044 kcal Electronic energy + Delta-G solvation = -28116.027627 eV Core-core repulsion = 24100.311671 eV Total energy + Delta-G solvation = -4015.715956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67667 -39.99784 -38.52470 -37.35748 -36.27460 -34.38603 -32.71671 -32.65342 -31.15253 -30.93660 -28.78103 -27.65228 -26.13866 -25.48320 -24.22505 -22.75036 -21.73476 -20.94666 -20.09200 -19.26612 -18.12562 -18.04580 -17.20830 -16.58912 -16.16541 -15.66059 -15.36871 -15.20037 -15.03144 -14.61113 -14.49999 -14.24346 -14.05745 -13.71097 -13.58632 -13.38382 -13.07633 -12.90314 -12.76466 -12.74390 -12.57220 -12.45476 -12.14284 -12.01372 -11.80765 -11.47048 -11.37890 -11.09382 -10.80653 -10.50479 -10.21997 -10.09735 -9.63967 -9.51397 -9.48100 -9.20645 -9.11519 -9.06136 -8.56646 -8.14219 -6.78429 -4.53805 0.36422 1.18363 2.40327 2.77996 3.03424 3.10295 3.12049 3.19818 3.34261 3.84755 4.12371 4.27576 4.45482 4.52570 4.61163 4.65422 4.75865 4.80144 4.81584 5.07732 5.13592 5.14187 5.21517 5.25768 5.34791 5.38661 5.44993 5.49863 5.66824 5.78062 5.81655 5.84945 5.88197 5.98506 6.08654 6.10023 6.15669 6.18958 6.21727 6.36450 6.61493 6.63958 7.15124 7.45161 7.90614 8.02150 8.09490 8.42023 8.50800 8.63386 9.22368 10.58064 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002880 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.076692 B = 9718.657908 C =10923.971145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.165 4.165 4 N -0.725 5.725 5 C 0.561 3.439 6 O -0.533 6.533 7 C -0.123 4.123 8 C -0.066 4.066 9 C -0.110 4.110 10 C -0.091 4.091 11 C 0.568 3.432 12 O -0.552 6.552 13 N -0.623 5.623 14 C 0.130 3.870 15 C 0.200 3.800 16 O -0.566 6.566 17 C -0.616 4.616 18 H 0.071 0.929 19 C 0.035 3.965 20 N -0.885 5.885 21 Si 1.037 2.963 22 H -0.276 1.276 23 H -0.278 1.278 24 H -0.272 1.272 25 C 0.047 3.953 26 C -0.072 4.072 27 C -0.097 4.097 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.368 0.632 41 H 0.275 0.725 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 14.145 -8.152 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.378 5.378 5 C 0.349 3.651 6 O -0.410 6.410 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.128 4.128 10 C -0.094 4.094 11 C 0.358 3.642 12 O -0.433 6.433 13 N -0.356 5.356 14 C 0.009 3.991 15 C 0.159 3.841 16 O -0.375 6.375 17 C -0.654 4.654 18 H 0.090 0.910 19 C -0.173 4.173 20 N -0.518 5.518 21 Si 0.864 3.136 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.198 1.198 25 C -0.076 4.076 26 C -0.091 4.091 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.218 0.782 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.159 0.841 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.040 14.272 -9.413 24.855 hybrid contribution -0.178 0.183 1.541 1.562 sum -18.218 14.456 -7.872 24.553 Atomic orbital electron populations 1.22087 0.93974 1.02794 1.03041 1.20971 0.94042 0.93119 0.88729 1.22199 1.02334 0.95635 1.02127 1.46046 1.17790 1.56907 1.17011 1.18358 0.81265 0.77996 0.87484 1.90773 1.56154 1.59643 1.34416 1.20043 0.96372 1.02100 0.94077 1.21262 0.94325 0.94299 0.98576 1.22173 1.01367 0.97394 0.91826 1.20263 0.95530 0.99312 0.94345 1.17910 0.80534 0.78164 0.87595 1.90719 1.57787 1.63104 1.31666 1.50060 1.20754 1.47585 1.17168 1.23289 0.92177 0.89716 0.93908 1.20411 0.91532 0.82158 0.89985 1.86379 1.57361 1.44930 1.48782 1.22194 0.91323 1.54642 0.97269 0.91039 1.25828 0.95993 0.92029 1.03435 1.70800 1.15002 1.37293 1.28676 0.84198 0.75793 0.77453 0.76135 1.20126 1.20480 1.19814 1.24961 0.89060 1.00908 0.92636 1.21185 0.94622 0.94926 0.98403 1.21167 0.99190 0.98911 0.92306 0.91989 0.90776 0.91835 0.89235 0.92426 0.91923 0.91534 0.76466 0.84002 0.83133 0.90527 0.88737 0.78159 0.91479 0.88075 0.90747 0.84058 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.38 37.15 0.35 -0.39 16 2 C 0.14 0.99 3.18 -67.93 -0.22 0.77 16 3 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 4 N -0.72 -5.96 5.03 -54.69 -0.27 -6.24 16 5 C 0.56 6.66 7.74 -12.25 -0.09 6.56 16 6 O -0.53 -8.08 16.00 5.34 0.09 -7.99 16 7 C -0.12 -1.47 5.88 -104.90 -0.62 -2.09 16 8 C -0.07 -0.88 9.58 -39.24 -0.38 -1.26 16 9 C -0.11 -1.62 9.07 -39.24 -0.36 -1.97 16 10 C -0.09 -1.45 5.88 -104.90 -0.62 -2.06 16 11 C 0.57 10.94 7.99 -12.24 -0.10 10.84 16 12 O -0.55 -11.89 17.10 5.34 0.09 -11.80 16 13 N -0.62 -12.26 3.61 -179.15 -0.65 -12.91 16 14 C 0.13 2.67 8.23 -2.97 -0.02 2.65 16 15 C 0.20 4.40 1.07 -90.85 -0.10 4.30 16 16 O -0.57 -12.71 13.46 -35.23 -0.47 -13.18 16 17 C -0.62 -15.38 9.04 -34.44 -0.31 -15.69 16 18 H 0.07 1.92 8.05 -52.48 -0.42 1.50 16 19 C 0.04 0.90 5.44 -17.82 -0.10 0.80 16 20 N -0.89 -24.49 13.69 55.43 0.76 -23.73 16 21 Si 1.04 21.45 24.65 -169.99 -4.19 17.26 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.21 5.75 56.52 0.33 -4.89 16 24 H -0.27 -5.02 6.39 56.52 0.36 -4.65 16 25 C 0.05 0.90 3.25 -2.84 -0.01 0.89 16 26 C -0.07 -0.94 9.58 -39.24 -0.38 -1.32 16 27 C -0.10 -1.01 9.53 -39.24 -0.37 -1.38 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.40 2.28 6.62 -40.82 -0.27 2.01 16 36 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 37 H 0.15 2.27 3.88 -52.48 -0.20 2.07 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 40 H 0.37 7.68 5.85 45.56 0.27 7.94 16 41 H 0.27 7.59 8.73 -40.82 -0.36 7.24 16 42 H 0.10 1.87 8.08 -51.93 -0.42 1.45 16 43 H 0.07 1.33 5.08 -51.93 -0.26 1.07 16 44 H 0.14 1.74 7.66 -52.49 -0.40 1.34 16 45 H 0.13 0.84 6.39 -52.49 -0.34 0.50 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -31.62 367.76 -7.56 -39.19 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -5.49 Total: 14.01 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.96 Total: -0.15 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.16 Total: -42.88 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.30 Total: -32.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.19 Total: 17.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.62 -7.56 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331966662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.925 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds