Wall clock time and date at job start Tue Mar 31 2020 18:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46873 * 2 1 4 4 N 1.46503 * 109.47323 * 119.99646 * 2 1 3 5 5 C 1.34774 * 120.00204 * 155.00021 * 4 2 1 6 6 O 1.21533 * 119.99571 * 0.02562 * 5 4 2 7 7 C 1.48030 * 120.00110 * 180.02562 * 5 4 2 8 8 C 1.39551 * 120.00033 * 179.97438 * 7 5 4 9 9 C 1.37824 * 120.00096 * 180.02562 * 8 7 5 10 10 C 1.39558 * 119.99797 * 0.02562 * 9 8 7 11 11 C 1.48036 * 119.99714 * 179.97438 * 10 9 8 12 12 O 1.21524 * 119.99769 * 171.44012 * 11 10 9 13 13 N 1.34776 * 119.99893 * 351.44549 * 11 10 9 14 14 C 1.47585 * 134.48896 * 181.74116 * 13 11 10 15 15 C 1.53944 * 86.11677 * 155.35585 * 14 13 11 16 16 O 1.42899 * 113.73979 * 269.15273 * 15 14 13 17 17 C 1.50693 * 113.74437 * 137.95285 * 15 14 13 18 18 H 1.08007 * 119.99880 * 17.14417 * 17 15 14 19 19 C 1.37876 * 120.00381 * 197.14391 * 17 15 14 20 20 N 1.31509 * 120.00556 * 191.76660 * 19 17 15 21 21 Si 1.86804 * 119.99738 * 11.77123 * 19 17 15 22 22 H 1.48496 * 109.47275 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47227 * 299.99828 * 21 19 17 24 24 H 1.48507 * 109.47113 * 59.99967 * 21 19 17 25 25 C 1.47809 * 134.46153 * 1.60157 * 13 11 10 26 26 C 1.39550 * 120.00208 * 0.27124 * 10 9 8 27 27 C 1.37829 * 119.99794 * 359.44801 * 26 10 9 28 28 H 1.08998 * 109.47762 * 299.99770 * 1 2 3 29 29 H 1.09003 * 109.47375 * 60.00291 * 1 2 3 30 30 H 1.09004 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47432 * 239.99874 * 2 1 3 32 32 H 1.09004 * 109.46794 * 60.00045 * 3 2 1 33 33 H 1.09002 * 109.46969 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47198 * 300.00047 * 3 2 1 35 35 H 0.96996 * 119.99662 * 335.00943 * 4 2 1 36 36 H 1.07998 * 120.00285 * 0.02562 * 8 7 5 37 37 H 1.08006 * 119.99977 * 180.02562 * 9 8 7 38 38 H 1.09001 * 113.76823 * 41.05241 * 14 13 11 39 39 H 1.09002 * 113.76562 * 269.65419 * 14 13 11 40 40 H 0.96707 * 114.00420 * 177.00813 * 16 15 14 41 41 H 0.97005 * 119.99896 * 354.87895 * 20 19 17 42 42 H 1.09002 * 113.76706 * 90.37795 * 25 13 11 43 43 H 1.09005 * 113.83620 * 318.92050 * 25 13 11 44 44 H 1.07992 * 120.00238 * 179.72635 * 26 10 9 45 45 H 1.07997 * 120.00013 * 180.27371 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9372 -1.1985 0.2007 7 6 3.7335 -1.9573 2.4030 8 6 4.9986 -2.5464 2.4010 9 6 5.4576 -3.1970 3.5260 10 6 4.6570 -3.2670 4.6670 11 6 5.1499 -3.9662 5.8751 12 8 4.5252 -3.8958 6.9152 13 7 6.2913 -4.6808 5.8216 14 6 7.0405 -5.5070 6.7881 15 6 7.6171 -6.2346 5.5600 16 8 6.8517 -7.3704 5.1524 17 6 9.0917 -6.5268 5.6649 18 1 9.5827 -6.4893 6.6262 19 6 9.8142 -6.8421 4.5337 20 7 11.0344 -7.3200 4.6446 21 14 9.0600 -6.5902 2.8434 22 1 10.0338 -7.0015 1.8005 23 1 7.8288 -7.4118 2.7232 24 1 8.7179 -5.1564 2.6626 25 6 7.2938 -4.9534 4.7702 26 6 3.3895 -2.6832 4.6669 27 6 2.9328 -2.0276 3.5438 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.4621 -0.7387 1.9894 36 1 5.6179 -2.4926 1.5179 37 1 6.4368 -3.6526 3.5246 38 1 6.4063 -6.1354 7.4134 39 1 7.7843 -4.9503 7.3582 40 1 7.1846 -7.8032 4.3543 41 1 11.4538 -7.3812 5.5172 42 1 8.1121 -4.2337 4.7462 43 1 6.8614 -5.1407 3.7872 44 1 2.7682 -2.7412 5.5483 45 1 1.9536 -1.5720 3.5453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331966662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:49 Heat of formation + Delta-G solvation = -70.470883 kcal Electronic energy + Delta-G solvation = -28117.083862 eV Core-core repulsion = 24100.311671 eV Total energy + Delta-G solvation = -4016.772191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88414 -41.19656 -39.78749 -38.73361 -37.02307 -36.10765 -34.66193 -33.61284 -32.17059 -31.87275 -30.32917 -28.08746 -27.68741 -27.10692 -25.49316 -23.72346 -22.67226 -21.90169 -21.45807 -20.70127 -19.95636 -19.07286 -18.54517 -17.72981 -17.42760 -17.10888 -16.74917 -16.26604 -16.00278 -15.86758 -15.62459 -15.32270 -15.19248 -15.04610 -14.82506 -14.57232 -14.31411 -14.22873 -13.98649 -13.86231 -13.53898 -13.45369 -13.16556 -13.04502 -12.98131 -12.45273 -12.30036 -12.21788 -12.18798 -11.90137 -11.79692 -11.37303 -11.16820 -11.11861 -10.89644 -10.38518 -10.34737 -10.16733 -10.08897 -9.75332 -8.83148 -6.60670 -0.69825 0.20778 1.30076 1.40490 1.47112 1.57636 1.75092 2.01293 2.03853 2.40954 2.75806 2.89618 3.10230 3.41386 3.59010 3.61510 3.70826 3.81243 3.96233 4.10766 4.14575 4.18984 4.23783 4.31033 4.33333 4.43515 4.51820 4.57715 4.70736 4.73920 4.76469 4.87090 4.93899 4.94530 5.00119 5.03473 5.12915 5.22154 5.28314 5.33932 5.47893 5.56952 5.62501 5.91002 6.39663 6.44902 6.57350 6.90522 6.92769 7.10921 7.25496 8.52314 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002880 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.076692 B = 9718.657908 C =10923.971145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.706 5.706 5 C 0.560 3.440 6 O -0.572 6.572 7 C -0.119 4.119 8 C -0.072 4.072 9 C -0.113 4.113 10 C -0.114 4.114 11 C 0.566 3.434 12 O -0.582 6.582 13 N -0.626 5.626 14 C 0.126 3.874 15 C 0.191 3.809 16 O -0.573 6.573 17 C -0.618 4.618 18 H 0.035 0.965 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 1.062 2.938 22 H -0.288 1.288 23 H -0.245 1.245 24 H -0.233 1.233 25 C 0.060 3.940 26 C -0.071 4.071 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.375 0.625 41 H 0.259 0.741 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.149 0.851 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.628 16.212 -9.958 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.359 5.359 5 C 0.347 3.653 6 O -0.452 6.452 7 C -0.122 4.122 8 C -0.091 4.091 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.358 3.642 12 O -0.465 6.465 13 N -0.358 5.358 14 C 0.004 3.996 15 C 0.150 3.850 16 O -0.382 6.382 17 C -0.656 4.656 18 H 0.054 0.946 19 C -0.208 4.208 20 N -0.554 5.554 21 Si 0.882 3.118 22 H -0.214 1.214 23 H -0.170 1.170 24 H -0.156 1.156 25 C -0.062 4.062 26 C -0.090 4.090 27 C -0.092 4.092 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.226 0.774 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.166 0.834 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.737 16.361 -11.183 29.415 hybrid contribution 0.898 -0.421 2.164 2.381 sum -20.839 15.939 -9.019 27.743 Atomic orbital electron populations 1.22046 0.91372 1.03316 1.04400 1.21105 0.95956 0.92774 0.87449 1.22172 1.00517 0.95734 1.03546 1.45987 1.16583 1.55383 1.17982 1.18368 0.82010 0.78094 0.86804 1.90765 1.57474 1.61284 1.35670 1.20206 0.96032 1.01264 0.94702 1.21313 0.95180 0.94464 0.98166 1.22019 1.01078 0.98055 0.91925 1.20107 0.97218 1.01144 0.93259 1.18476 0.79698 0.77616 0.88448 1.90692 1.58417 1.64240 1.33110 1.50013 1.21167 1.47863 1.16760 1.23254 0.92501 0.90064 0.93790 1.20383 0.89544 0.83087 0.91954 1.86362 1.57116 1.45377 1.49374 1.22275 0.93247 1.54245 0.95847 0.94623 1.27245 0.95421 0.90755 1.07378 1.70943 1.16611 1.40193 1.27675 0.83975 0.76207 0.80395 0.71253 1.21358 1.17037 1.15644 1.24811 0.89300 0.98891 0.93167 1.21351 0.93568 0.94517 0.99532 1.21517 1.00433 0.96972 0.90259 0.90420 0.89676 0.91725 0.91299 0.91127 0.94662 0.90076 0.74665 0.83841 0.83733 0.91131 0.88197 0.77423 0.93202 0.87266 0.88630 0.83364 0.80686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.38 71.98 0.68 -0.15 16 2 C 0.13 1.54 3.18 44.99 0.14 1.69 16 3 C -0.16 -1.86 9.48 71.98 0.68 -1.18 16 4 N -0.71 -9.17 5.03 -445.23 -2.24 -11.41 16 5 C 0.56 11.82 7.74 86.84 0.67 12.49 16 6 O -0.57 -16.60 16.00 -3.82 -0.06 -16.66 16 7 C -0.12 -2.48 5.88 -20.04 -0.12 -2.60 16 8 C -0.07 -1.78 9.58 22.49 0.22 -1.56 16 9 C -0.11 -3.08 9.07 22.49 0.20 -2.88 16 10 C -0.11 -3.39 5.88 -20.04 -0.12 -3.51 16 11 C 0.57 21.22 7.99 86.84 0.69 21.91 16 12 O -0.58 -24.75 17.10 -3.79 -0.06 -24.81 16 13 N -0.63 -24.11 3.61 -842.82 -3.04 -27.16 16 14 C 0.13 5.19 8.23 86.48 0.71 5.91 16 15 C 0.19 8.33 1.07 -10.88 -0.01 8.32 16 16 O -0.57 -25.15 13.46 -148.98 -2.01 -27.16 16 17 C -0.62 -31.59 9.04 25.60 0.23 -31.36 16 18 H 0.04 2.02 8.05 -2.91 -0.02 2.00 16 19 C -0.01 -0.35 5.44 84.66 0.46 0.11 16 20 N -0.92 -52.59 13.69 21.45 0.29 -52.30 16 21 Si 1.06 41.59 24.65 68.60 1.69 43.28 16 22 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.25 -8.30 5.75 99.48 0.57 -7.73 16 24 H -0.23 -7.64 6.39 99.48 0.64 -7.01 16 25 C 0.06 2.22 3.25 86.44 0.28 2.50 16 26 C -0.07 -1.62 9.58 22.49 0.22 -1.41 16 27 C -0.07 -1.21 9.53 22.49 0.21 -1.00 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 1.13 7.58 -2.39 -0.02 1.12 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.41 2.70 6.62 -92.71 -0.61 2.08 16 36 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 37 H 0.15 4.03 3.88 -2.91 -0.01 4.02 16 38 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.10 3.94 8.09 -2.39 -0.02 3.92 16 40 H 0.37 14.98 5.85 -74.05 -0.43 14.55 16 41 H 0.26 15.09 8.73 -92.70 -0.81 14.29 16 42 H 0.11 3.84 8.08 -2.39 -0.02 3.82 16 43 H 0.10 3.14 5.08 -2.38 -0.01 3.12 16 44 H 0.15 3.21 7.66 -2.91 -0.02 3.19 16 45 H 0.18 1.21 6.39 -2.91 -0.02 1.19 16 Total: -1.00 -71.94 367.76 -0.52 -72.45 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.24 Total: 36.46 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.15 Total: 7.30 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -4.99 Total: -90.87 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -2.13 Total: -68.63 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.69 Total: 43.28 kcal Total: -71.94 -0.52 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331966662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.984 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds