Wall clock time and date at job start Tue Mar 31 2020 17:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99825 * 2 1 4 4 C 1.30993 * 119.99973 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00300 * 174.78108 * 4 2 1 6 6 O 1.42894 * 109.47217 * 135.27646 * 5 4 2 7 7 C 1.35920 * 116.99780 * 180.02562 * 6 5 4 8 8 C 1.38846 * 119.98439 * 359.72763 * 7 6 5 9 9 C 1.38250 * 120.23899 * 179.72308 * 8 7 6 10 10 C 1.38007 * 120.20167 * 0.55433 * 9 8 7 11 11 C 1.39564 * 119.96780 * 359.72309 * 10 9 8 12 12 C 1.47857 * 120.11646 * 180.02562 * 11 10 9 13 13 O 1.21557 * 119.99631 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00197 * 359.97016 * 12 11 10 15 15 C 1.46496 * 120.00162 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47200 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00192 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00037 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47201 * 89.99761 * 23 21 19 25 25 H 1.48505 * 109.47042 * 209.99796 * 23 21 19 26 26 H 1.48497 * 109.47168 * 329.99683 * 23 21 19 27 27 C 1.38452 * 119.98530 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47363 * 270.00227 * 1 2 3 29 29 H 1.09009 * 109.47371 * 30.00330 * 1 2 3 30 30 H 1.09001 * 109.47337 * 149.99722 * 1 2 3 31 31 H 1.08994 * 109.47131 * 244.52484 * 3 2 1 32 32 H 1.09000 * 109.47582 * 4.52551 * 3 2 1 33 33 H 1.09001 * 109.46857 * 124.52703 * 3 2 1 34 34 H 1.08000 * 120.00223 * 354.50656 * 4 2 1 35 35 H 1.09004 * 109.47482 * 255.28347 * 5 4 2 36 36 H 1.09001 * 109.46861 * 15.27461 * 5 4 2 37 37 H 1.08007 * 119.88285 * 359.97438 * 8 7 6 38 38 H 1.07995 * 119.89792 * 180.25186 * 9 8 7 39 39 H 1.07999 * 120.01335 * 179.74777 * 10 9 8 40 40 H 0.97003 * 119.99790 * 0.02562 * 14 12 11 41 41 H 1.09007 * 109.46941 * 299.99996 * 15 14 12 42 42 H 1.08994 * 109.47159 * 59.99540 * 15 14 12 43 43 H 0.97003 * 119.99666 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00085 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.09856 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1344 0.0005 5 6 3.6643 -1.1373 -0.1182 6 8 4.2155 -2.0508 0.8323 7 6 5.5689 -2.1736 0.8571 8 6 6.3490 -1.4329 -0.0208 9 6 7.7264 -1.5493 0.0038 10 6 8.3344 -2.4114 0.8935 11 6 7.5583 -3.1643 1.7758 12 6 8.2063 -4.0885 2.7308 13 8 7.5282 -4.7429 3.4986 14 7 9.5489 -4.2055 2.7500 15 6 10.1910 -5.1216 3.6958 16 6 11.6858 -5.0646 3.5142 17 8 12.1675 -4.3312 2.6768 18 7 12.4876 -5.8293 4.2817 19 6 13.8475 -5.7778 4.1162 20 1 14.2764 -5.1249 3.3705 21 6 14.6740 -6.5658 4.9078 22 7 14.1522 -7.3600 5.8155 23 14 16.5270 -6.4962 4.6818 24 1 17.0947 -5.4478 5.5671 25 1 17.1181 -7.8129 5.0317 26 1 16.8413 -6.1728 3.2669 27 6 6.1687 -3.0417 1.7534 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 2.8249 1.3988 -0.9277 32 1 1.5549 2.1320 0.0811 33 1 2.9465 1.3285 0.8467 34 1 1.6257 -2.0676 0.0905 35 1 3.9487 -1.4444 -1.1247 36 1 4.0460 -0.1352 0.0773 37 1 5.8783 -0.7602 -0.7226 38 1 8.3280 -0.9676 -0.6788 39 1 9.4105 -2.5030 0.9073 40 1 10.0900 -3.6830 2.1374 41 1 9.9376 -4.8282 4.7146 42 1 9.8407 -6.1373 3.5125 43 1 12.1023 -6.4160 4.9512 44 1 14.7291 -7.9103 6.3679 45 1 5.5627 -3.6217 2.4338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343519659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:00 Heat of formation + Delta-G solvation = -76.555151 kcal Electronic energy + Delta-G solvation = -26283.620889 eV Core-core repulsion = 22266.584864 eV Total energy + Delta-G solvation = -4017.036025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.59793 -39.54667 -38.25744 -37.55138 -36.51492 -34.51975 -33.73300 -31.50376 -31.36430 -30.86556 -29.30668 -28.26453 -27.65493 -25.23104 -24.58314 -23.03330 -22.58430 -20.30885 -19.67439 -18.84462 -18.40201 -17.99459 -16.84475 -16.47803 -16.30111 -16.16377 -15.56989 -15.29829 -15.24871 -14.67084 -14.56629 -14.44277 -14.28700 -14.11618 -13.88196 -13.86164 -13.39804 -13.15244 -12.96335 -12.72021 -12.41590 -12.27594 -12.13799 -12.02963 -11.95444 -11.64204 -11.56620 -11.31427 -11.13047 -11.03725 -10.46498 -10.32780 -9.87369 -9.64646 -9.32061 -9.22826 -8.81658 -8.65207 -8.44851 -8.11193 -6.52258 -3.94364 0.69866 1.22722 1.50105 2.88638 2.90282 3.11296 3.21725 3.26408 3.40968 3.71248 3.79566 4.10555 4.27539 4.39867 4.54600 4.58741 4.70647 4.77644 4.81727 4.84592 4.93091 5.01580 5.03858 5.13790 5.16299 5.19461 5.25155 5.32918 5.35177 5.45125 5.53306 5.73788 5.88460 5.94575 6.01715 6.05826 6.09633 6.17359 6.20062 6.29532 6.43173 6.62832 7.14832 7.45278 7.75531 7.90812 8.36772 8.44489 9.03533 9.38038 9.85714 10.64530 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040329 B = 0.001612 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.114418 B =17368.918139 C =17886.352928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 C -0.128 4.128 4 C -0.170 4.170 5 C 0.088 3.912 6 O -0.310 6.310 7 C 0.119 3.881 8 C -0.189 4.189 9 C -0.086 4.086 10 C -0.121 4.121 11 C -0.088 4.088 12 C 0.555 3.445 13 O -0.542 6.542 14 N -0.700 5.700 15 C 0.108 3.892 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.548 5.548 19 C -0.306 4.306 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.093 4.093 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.411 0.589 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.851 14.483 -12.387 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.111 4.111 3 C -0.185 4.185 4 C -0.188 4.188 5 C 0.013 3.987 6 O -0.224 6.224 7 C 0.074 3.926 8 C -0.208 4.208 9 C -0.104 4.104 10 C -0.140 4.140 11 C -0.091 4.091 12 C 0.341 3.659 13 O -0.420 6.420 14 N -0.354 5.354 15 C -0.019 4.019 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.182 5.182 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.112 4.112 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.251 0.749 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.011 14.246 -12.120 29.654 hybrid contribution 1.070 -0.063 -0.081 1.074 sum -21.942 14.183 -12.201 28.835 Atomic orbital electron populations 1.20878 0.91448 1.02709 1.02510 1.21662 0.96210 0.94773 0.98459 1.20964 1.00258 0.94908 1.02321 1.22317 0.93496 0.98593 1.04404 1.21853 0.91881 0.92801 0.92121 1.86125 1.17664 1.61351 1.57213 1.18793 0.82454 0.95819 0.95508 1.21402 0.94971 1.02930 1.01494 1.20891 0.93785 0.97655 0.98071 1.21377 1.00402 0.96546 0.95681 1.19713 0.93210 0.98476 0.97674 1.18125 0.82100 0.82300 0.83356 1.90768 1.63668 1.46254 1.41360 1.45615 1.06111 1.44341 1.39310 1.20996 0.92503 0.94581 0.93850 1.19713 0.87371 0.85622 0.85971 1.90489 1.75817 1.43910 1.38265 1.41788 1.06818 1.36943 1.32678 1.19736 0.80634 1.23785 1.19383 0.87642 1.25328 1.01045 0.95721 0.95563 1.69616 1.36772 1.25540 1.21452 0.85809 0.81630 0.77582 0.78984 1.20260 1.20789 1.19314 1.20448 0.93307 0.98573 0.98923 0.91029 0.91547 0.91544 0.91309 0.91557 0.91023 0.86100 0.91041 0.91156 0.85283 0.84984 0.84779 0.74940 0.89575 0.89567 0.76994 0.91567 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.96 36.01 0.36 -0.19 16 2 C -0.11 -0.67 6.05 -101.07 -0.61 -1.28 16 3 C -0.13 -0.63 8.56 36.01 0.31 -0.32 16 4 C -0.17 -1.23 9.47 -36.02 -0.34 -1.57 16 5 C 0.09 0.68 4.92 36.01 0.18 0.86 16 6 O -0.31 -3.44 10.12 -19.49 -0.20 -3.64 16 7 C 0.12 1.39 6.68 -39.28 -0.26 1.13 16 8 C -0.19 -1.81 9.03 -39.35 -0.36 -2.17 16 9 C -0.09 -0.84 10.03 -39.66 -0.40 -1.23 16 10 C -0.12 -1.44 9.54 -39.17 -0.37 -1.81 16 11 C -0.09 -1.24 5.87 -104.99 -0.62 -1.85 16 12 C 0.55 9.37 7.77 -12.32 -0.10 9.28 16 13 O -0.54 -10.61 16.35 5.32 0.09 -10.52 16 14 N -0.70 -11.98 5.48 -62.43 -0.34 -12.33 16 15 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 16 C 0.43 9.77 7.85 -10.99 -0.09 9.69 16 17 O -0.60 -15.15 15.24 5.55 0.08 -15.07 16 18 N -0.55 -13.53 5.29 -10.97 -0.06 -13.59 16 19 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 23 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 C -0.09 -1.26 9.53 -39.03 -0.37 -1.63 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.24 8.09 -51.92 -0.42 -0.18 16 30 H 0.07 0.28 8.06 -51.93 -0.42 -0.13 16 31 H 0.07 0.28 8.03 -51.93 -0.42 -0.14 16 32 H 0.07 0.26 7.97 -51.93 -0.41 -0.15 16 33 H 0.07 0.38 7.48 -51.93 -0.39 -0.01 16 34 H 0.12 0.88 8.05 -52.49 -0.42 0.46 16 35 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 36 H 0.07 0.46 5.45 -51.93 -0.28 0.18 16 37 H 0.13 0.88 6.28 -52.48 -0.33 0.55 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.50 6.40 -52.49 -0.34 1.16 16 40 H 0.41 6.79 5.47 -40.82 -0.22 6.57 16 41 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.14 2.03 7.65 -52.49 -0.40 1.63 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -31.95 385.43 -7.83 -39.78 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.97 Total: 14.15 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.94 Total: 3.04 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.32 Total: -48.97 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.03 Total: -29.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.95 -7.83 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.772 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds