Wall clock time and date at job start Tue Mar 31 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99825 * 2 1 4 4 C 1.30993 * 119.99973 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00300 * 174.78108 * 4 2 1 6 6 O 1.42894 * 109.47217 * 135.27646 * 5 4 2 7 7 C 1.35920 * 116.99780 * 180.02562 * 6 5 4 8 8 C 1.38846 * 119.98439 * 359.72763 * 7 6 5 9 9 C 1.38250 * 120.23899 * 179.72308 * 8 7 6 10 10 C 1.38007 * 120.20167 * 0.55433 * 9 8 7 11 11 C 1.39564 * 119.96780 * 359.72309 * 10 9 8 12 12 C 1.47857 * 120.11646 * 180.02562 * 11 10 9 13 13 O 1.21557 * 119.99631 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00197 * 359.97016 * 12 11 10 15 15 C 1.46496 * 120.00162 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47200 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00192 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00037 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47201 * 89.99761 * 23 21 19 25 25 H 1.48505 * 109.47042 * 209.99796 * 23 21 19 26 26 H 1.48497 * 109.47168 * 329.99683 * 23 21 19 27 27 C 1.38452 * 119.98530 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47363 * 270.00227 * 1 2 3 29 29 H 1.09009 * 109.47371 * 30.00330 * 1 2 3 30 30 H 1.09001 * 109.47337 * 149.99722 * 1 2 3 31 31 H 1.08994 * 109.47131 * 244.52484 * 3 2 1 32 32 H 1.09000 * 109.47582 * 4.52551 * 3 2 1 33 33 H 1.09001 * 109.46857 * 124.52703 * 3 2 1 34 34 H 1.08000 * 120.00223 * 354.50656 * 4 2 1 35 35 H 1.09004 * 109.47482 * 255.28347 * 5 4 2 36 36 H 1.09001 * 109.46861 * 15.27461 * 5 4 2 37 37 H 1.08007 * 119.88285 * 359.97438 * 8 7 6 38 38 H 1.07995 * 119.89792 * 180.25186 * 9 8 7 39 39 H 1.07999 * 120.01335 * 179.74777 * 10 9 8 40 40 H 0.97003 * 119.99790 * 0.02562 * 14 12 11 41 41 H 1.09007 * 109.46941 * 299.99996 * 15 14 12 42 42 H 1.08994 * 109.47159 * 59.99540 * 15 14 12 43 43 H 0.97003 * 119.99666 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00085 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.09856 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1344 0.0005 5 6 3.6643 -1.1373 -0.1182 6 8 4.2155 -2.0508 0.8323 7 6 5.5689 -2.1736 0.8571 8 6 6.3490 -1.4329 -0.0208 9 6 7.7264 -1.5493 0.0038 10 6 8.3344 -2.4114 0.8935 11 6 7.5583 -3.1643 1.7758 12 6 8.2063 -4.0885 2.7308 13 8 7.5282 -4.7429 3.4986 14 7 9.5489 -4.2055 2.7500 15 6 10.1910 -5.1216 3.6958 16 6 11.6858 -5.0646 3.5142 17 8 12.1675 -4.3312 2.6768 18 7 12.4876 -5.8293 4.2817 19 6 13.8475 -5.7778 4.1162 20 1 14.2764 -5.1249 3.3705 21 6 14.6740 -6.5658 4.9078 22 7 14.1522 -7.3600 5.8155 23 14 16.5270 -6.4962 4.6818 24 1 17.0947 -5.4478 5.5671 25 1 17.1181 -7.8129 5.0317 26 1 16.8413 -6.1728 3.2669 27 6 6.1687 -3.0417 1.7534 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 2.8249 1.3988 -0.9277 32 1 1.5549 2.1320 0.0811 33 1 2.9465 1.3285 0.8467 34 1 1.6257 -2.0676 0.0905 35 1 3.9487 -1.4444 -1.1247 36 1 4.0460 -0.1352 0.0773 37 1 5.8783 -0.7602 -0.7226 38 1 8.3280 -0.9676 -0.6788 39 1 9.4105 -2.5030 0.9073 40 1 10.0900 -3.6830 2.1374 41 1 9.9376 -4.8282 4.7146 42 1 9.8407 -6.1373 3.5125 43 1 12.1023 -6.4160 4.9512 44 1 14.7291 -7.9103 6.3679 45 1 5.5627 -3.6217 2.4338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343519659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:54 Heat of formation + Delta-G solvation = -97.098225 kcal Electronic energy + Delta-G solvation = -26284.511703 eV Core-core repulsion = 22266.584864 eV Total energy + Delta-G solvation = -4017.926840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.60857 -40.77875 -39.93083 -38.44012 -37.12558 -36.29196 -35.41333 -33.39185 -32.37918 -31.71537 -29.97506 -29.18109 -28.63138 -26.64193 -25.68223 -24.07460 -23.46739 -21.48324 -21.41672 -20.17612 -19.73249 -18.95105 -17.98796 -17.44056 -17.35629 -17.07732 -16.97177 -16.77934 -16.44247 -16.30480 -15.76680 -15.55731 -15.19044 -15.09752 -14.92708 -14.75096 -14.71243 -14.06078 -13.89658 -13.76767 -13.54507 -13.39505 -13.26662 -12.93774 -12.90470 -12.76450 -12.56155 -12.45490 -12.27693 -12.12156 -12.07137 -11.65221 -11.57096 -11.22713 -10.57647 -10.37384 -10.11046 -10.04189 -9.79338 -9.30896 -8.51010 -6.01393 -0.28351 0.34794 0.99287 1.36673 1.43459 1.55996 1.72395 1.84709 1.90040 2.28286 2.40497 2.77428 3.08978 3.16213 3.56059 3.72416 3.83808 3.97018 4.03925 4.11311 4.15781 4.20399 4.22901 4.33852 4.38637 4.39613 4.43529 4.49871 4.67312 4.76063 4.84676 4.89496 4.94348 5.10152 5.12894 5.14119 5.17503 5.26402 5.32800 5.38499 5.57686 5.65112 5.85826 5.91129 6.36841 6.40170 6.48235 7.01402 7.03611 7.43141 7.92978 8.65804 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040329 B = 0.001612 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.114418 B =17368.918139 C =17886.352928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.194 4.194 5 C 0.083 3.917 6 O -0.329 6.329 7 C 0.116 3.884 8 C -0.174 4.174 9 C -0.077 4.077 10 C -0.125 4.125 11 C -0.107 4.107 12 C 0.556 3.444 13 O -0.576 6.576 14 N -0.699 5.699 15 C 0.119 3.881 16 C 0.433 3.567 17 O -0.622 6.622 18 N -0.558 5.558 19 C -0.338 4.338 20 H 0.088 0.912 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.269 1.269 27 C -0.113 4.113 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.139 0.861 40 H 0.415 0.585 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.026 16.381 -14.053 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C -0.188 4.188 4 C -0.213 4.213 5 C 0.010 3.990 6 O -0.243 6.243 7 C 0.071 3.929 8 C -0.192 4.192 9 C -0.094 4.094 10 C -0.143 4.143 11 C -0.110 4.110 12 C 0.345 3.655 13 O -0.457 6.457 14 N -0.353 5.353 15 C -0.008 4.008 16 C 0.220 3.780 17 O -0.510 6.510 18 N -0.193 5.193 19 C -0.468 4.468 20 H 0.106 0.894 21 C -0.210 4.210 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.194 1.194 27 C -0.133 4.133 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.157 0.843 40 H 0.255 0.745 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.207 16.151 -13.791 31.458 hybrid contribution 0.972 -0.560 0.373 1.182 sum -22.235 15.591 -13.418 30.291 Atomic orbital electron populations 1.20946 0.90630 1.03469 1.02824 1.21941 0.96993 0.94959 0.96431 1.21032 1.00497 0.94480 1.02747 1.22320 0.93479 0.98830 1.06626 1.22102 0.91991 0.92862 0.92073 1.86116 1.17403 1.62367 1.58425 1.18833 0.83056 0.95625 0.95421 1.21791 0.94858 1.01945 1.00640 1.21293 0.94167 0.96603 0.97366 1.21517 1.00550 0.96637 0.95645 1.19494 0.93491 0.99467 0.98527 1.18573 0.81592 0.82096 0.83250 1.90739 1.64208 1.47807 1.42937 1.45587 1.06359 1.44184 1.39133 1.20840 0.89377 0.95717 0.94906 1.20325 0.88877 0.84158 0.84642 1.90464 1.76907 1.44611 1.39048 1.41832 1.06499 1.37647 1.33313 1.19764 0.81966 1.24853 1.20178 0.89408 1.26136 1.05195 0.94865 0.94845 1.69684 1.38343 1.25767 1.21772 0.84858 0.76251 0.78009 0.78805 1.19553 1.19713 1.19364 1.20374 0.93148 0.99797 0.99941 0.90866 0.90218 0.91420 0.90077 0.90493 0.91406 0.86952 0.89669 0.89676 0.81812 0.81412 0.84338 0.74489 0.88529 0.88526 0.76694 0.91068 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.96 71.24 0.71 -0.24 16 2 C -0.10 -1.08 6.05 -16.48 -0.10 -1.18 16 3 C -0.13 -0.97 8.56 71.24 0.61 -0.36 16 4 C -0.19 -2.64 9.47 25.65 0.24 -2.40 16 5 C 0.08 1.14 4.92 71.24 0.35 1.49 16 6 O -0.33 -7.10 10.12 -92.65 -0.94 -8.03 16 7 C 0.12 2.59 6.68 22.47 0.15 2.74 16 8 C -0.17 -2.79 9.03 22.42 0.20 -2.59 16 9 C -0.08 -1.24 10.03 22.22 0.22 -1.02 16 10 C -0.12 -2.78 9.54 22.53 0.21 -2.57 16 11 C -0.11 -3.03 5.87 -20.10 -0.12 -3.15 16 12 C 0.56 19.23 7.77 86.79 0.67 19.90 16 13 O -0.58 -23.34 16.35 -3.90 -0.06 -23.41 16 14 N -0.70 -24.12 5.48 -469.71 -2.57 -26.69 16 15 C 0.12 4.46 6.15 85.63 0.53 4.99 16 16 C 0.43 20.04 7.85 87.65 0.69 20.73 16 17 O -0.62 -31.87 15.24 -3.06 -0.05 -31.92 16 18 N -0.56 -28.02 5.29 -307.00 -1.62 -29.65 16 19 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 20 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 23 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 C -0.11 -3.13 9.53 22.63 0.22 -2.92 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.41 8.09 -2.38 -0.02 0.39 16 30 H 0.07 0.51 8.06 -2.39 -0.02 0.49 16 31 H 0.08 0.42 8.03 -2.39 -0.02 0.40 16 32 H 0.08 0.41 7.97 -2.39 -0.02 0.39 16 33 H 0.07 0.58 7.48 -2.39 -0.02 0.56 16 34 H 0.11 1.65 8.05 -2.91 -0.02 1.63 16 35 H 0.09 0.90 7.65 -2.38 -0.02 0.88 16 36 H 0.09 0.88 5.45 -2.39 -0.01 0.87 16 37 H 0.16 1.47 6.28 -2.91 -0.02 1.46 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.14 2.92 6.40 -2.91 -0.02 2.90 16 40 H 0.42 13.72 5.47 -92.71 -0.51 13.21 16 41 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 44 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.13 3.83 7.65 -2.91 -0.02 3.80 16 Total: -1.00 -69.70 385.43 2.74 -66.97 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.20 Total: 41.88 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.87 Total: 15.61 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -3.91 Total: -104.69 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -1.05 Total: -63.36 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.70 2.74 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.133 kcal (2) G-P(sol) polarization free energy of solvation -69.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds