Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46838 * 2 1 4 4 H 1.09005 * 109.47419 * 305.00155 * 3 2 1 5 5 C 1.50698 * 109.47052 * 185.00103 * 3 2 1 6 6 H 1.07997 * 120.00406 * 240.00063 * 5 3 2 7 7 C 1.37884 * 119.99777 * 60.00034 * 5 3 2 8 8 N 1.31509 * 120.00255 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46839 * 60.00148 * 9 7 5 11 11 H 1.48505 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47430 * 300.00433 * 9 7 5 13 13 N 1.46497 * 109.47255 * 65.00520 * 3 2 1 14 14 C 1.34781 * 119.99772 * 274.99647 * 13 3 2 15 15 O 1.21277 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00007 * 179.97438 * 14 13 3 17 17 O 1.42897 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.35968 * 117.00336 * 180.02562 * 17 16 14 19 19 C 1.38750 * 119.98506 * 0.28522 * 18 17 16 20 20 C 1.38069 * 120.03300 * 180.27745 * 19 18 17 21 21 C 1.38850 * 119.96811 * 359.73020 * 20 19 18 22 22 C 1.38844 * 119.96264 * 359.97438 * 21 20 19 23 23 C 1.38078 * 120.01868 * 0.02562 * 22 21 20 24 24 C 1.50664 * 119.83950 * 179.97438 * 22 21 20 25 25 C 1.52902 * 109.53776 * 326.01438 * 24 22 21 26 26 C 1.50500 * 109.90469 * 48.65521 * 25 24 22 27 27 O 1.21291 * 119.61984 * 144.78646 * 26 25 24 28 28 N 1.34558 * 120.75963 * 324.76029 * 26 25 24 29 29 H 1.09004 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46750 * 299.99398 * 1 2 3 31 31 H 1.08997 * 109.47677 * 59.99765 * 1 2 3 32 32 H 1.09002 * 109.46750 * 240.00602 * 2 1 3 33 33 H 1.08996 * 109.47281 * 119.99877 * 2 1 3 34 34 H 0.97003 * 120.00600 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00588 * 94.99483 * 13 3 2 36 36 H 1.09007 * 109.46998 * 60.00104 * 16 14 13 37 37 H 1.08996 * 109.47277 * 300.00576 * 16 14 13 38 38 H 1.08005 * 119.98342 * 359.97438 * 19 18 17 39 39 H 1.08003 * 120.01579 * 179.70037 * 20 19 18 40 40 H 1.08002 * 120.00221 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46045 * 86.03351 * 24 22 21 42 42 H 1.08997 * 109.46156 * 205.99193 * 24 22 21 43 43 H 1.08997 * 109.39770 * 168.78496 * 25 24 22 44 44 H 1.08996 * 109.39451 * 288.61094 * 25 24 22 45 45 H 0.97007 * 119.78483 * 180.83435 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5974 0.1474 -0.2350 11 1 6.3977 0.2168 -2.6506 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6327 0.4342 16 6 0.0363 3.3376 2.6549 17 8 -1.2888 3.8578 2.5300 18 6 -1.8039 4.5011 3.6115 19 6 -1.0457 4.6331 4.7660 20 6 -1.5699 5.2811 5.8667 21 6 -2.8545 5.8058 5.8160 22 6 -3.6103 5.6786 4.6582 23 6 -3.0850 5.0304 3.5581 24 6 -5.0041 6.2485 4.6065 25 6 -5.6571 6.1283 5.9838 26 6 -4.7190 6.6427 7.0423 27 8 -5.1659 7.2263 8.0071 28 7 -3.3902 6.4622 6.9309 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8291 -0.0609 -2.9501 35 1 2.2719 2.1231 1.9978 36 1 0.7277 4.1529 2.8680 37 1 0.0674 2.6129 3.4685 38 1 -0.0467 4.2244 4.8053 39 1 -0.9813 5.3795 6.7668 40 1 -3.6733 4.9312 2.6578 41 1 -4.9566 7.2984 4.3174 42 1 -5.5949 5.6971 3.8751 43 1 -6.5771 6.7126 6.0004 44 1 -5.8888 5.0824 6.1845 45 1 -2.7995 6.7890 7.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358053874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = -93.494909 kcal Electronic energy + Delta-G solvation = -27476.192351 eV Core-core repulsion = 23458.421763 eV Total energy + Delta-G solvation = -4017.770588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33832 -40.02909 -38.94523 -37.78860 -35.18668 -34.76295 -34.34778 -32.50818 -31.21623 -30.60201 -29.36130 -28.07517 -26.58956 -25.01444 -23.28406 -23.02682 -22.73066 -20.68823 -19.52574 -19.40681 -18.37491 -17.95623 -17.37305 -17.14293 -16.38727 -16.22533 -15.73134 -15.44323 -15.23859 -14.95293 -14.47154 -14.37456 -14.23345 -14.01501 -13.73249 -13.48057 -13.16558 -13.03651 -12.73323 -12.51484 -12.31224 -12.12433 -11.75874 -11.65827 -11.35497 -11.29985 -11.16940 -11.03723 -10.86843 -10.40772 -10.38212 -10.26830 -10.23485 -9.68506 -9.21287 -9.15429 -9.07612 -8.55933 -7.95095 -7.90865 -6.17885 -4.28044 0.87383 0.97469 2.19414 2.68646 2.81571 3.19241 3.21710 3.27552 3.28410 3.41511 3.96168 4.12468 4.23727 4.30639 4.41522 4.50150 4.70662 4.74030 4.84127 4.97892 5.05815 5.12267 5.15320 5.28448 5.32260 5.36770 5.47608 5.58178 5.72417 5.82745 6.03875 6.24232 6.34618 6.40410 6.40800 6.60529 6.79645 6.97779 7.11729 7.22419 7.29290 7.34608 7.55376 7.63361 7.65634 7.82742 8.11304 8.52805 8.69695 8.99237 9.39096 10.87315 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.001978 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.076449 B =14154.045614 C =14711.206053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.038 3.962 17 O -0.283 6.283 18 C 0.122 3.878 19 C -0.183 4.183 20 C -0.106 4.106 21 C 0.110 3.890 22 C -0.082 4.082 23 C -0.116 4.116 24 C -0.078 4.078 25 C -0.138 4.138 26 C 0.521 3.479 27 O -0.536 6.536 28 N -0.660 5.660 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.389 0.611 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 9.096 16.017 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.401 6.401 16 C -0.041 4.041 17 O -0.195 6.195 18 C 0.075 3.925 19 C -0.202 4.202 20 C -0.126 4.126 21 C 0.015 3.985 22 C -0.084 4.084 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.177 4.177 26 C 0.309 3.691 27 O -0.412 6.412 28 N -0.305 5.305 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.822 9.198 15.343 22.010 hybrid contribution 1.996 -0.002 0.776 2.141 sum -10.826 9.196 16.120 21.485 Atomic orbital electron populations 1.21847 0.98272 0.98173 1.01248 1.21952 0.92648 0.99709 1.02408 1.18830 0.94281 0.89171 0.80560 0.93152 1.21166 0.90537 1.39400 1.06425 0.92072 1.24888 0.98671 0.94745 0.95347 1.69876 1.35295 1.37312 1.09305 0.86500 0.84724 0.78326 0.77495 1.20160 1.21107 1.20171 1.46401 1.13958 1.56100 1.18934 1.19758 0.83441 0.80139 0.88168 1.90724 1.51026 1.58559 1.39815 1.22693 0.83269 0.99079 0.99095 1.86224 1.30203 1.68652 1.34435 1.19034 0.93177 0.93625 0.86628 1.21146 1.01219 1.04659 0.93203 1.20524 0.94064 0.98954 0.99069 1.17476 0.94239 0.99509 0.87245 1.19241 0.96456 1.00900 0.91821 1.20110 0.93814 1.00470 0.99074 1.20450 0.91925 1.02382 0.96742 1.21692 0.98595 1.04453 0.93001 1.20759 0.82598 0.78337 0.87372 1.90780 1.76095 1.41239 1.33115 1.43542 1.07887 1.56756 1.22313 0.95736 0.94368 0.93081 0.88163 0.94951 0.92410 0.77862 0.89467 0.89549 0.84582 0.85112 0.84115 0.89561 0.88602 0.87245 0.87748 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.54 2.24 -69.09 -0.15 6.38 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.97 11.29 55.43 0.63 -23.35 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -13.39 5.02 -54.94 -0.28 -13.67 16 14 C 0.50 9.26 6.47 -10.98 -0.07 9.19 16 15 O -0.52 -11.96 13.64 -14.35 -0.20 -12.16 16 16 C 0.04 0.49 5.22 36.00 0.19 0.68 16 17 O -0.28 -4.12 9.67 -39.55 -0.38 -4.50 16 18 C 0.12 1.41 6.69 -39.22 -0.26 1.14 16 19 C -0.18 -1.69 9.03 -39.45 -0.36 -2.05 16 20 C -0.11 -0.84 9.92 -39.42 -0.39 -1.24 16 21 C 0.11 0.94 6.51 -83.66 -0.54 0.39 16 22 C -0.08 -0.70 5.66 -104.47 -0.59 -1.29 16 23 C -0.12 -1.17 9.62 -39.46 -0.38 -1.55 16 24 C -0.08 -0.48 6.00 -27.95 -0.17 -0.65 16 25 C -0.14 -0.88 6.07 -28.03 -0.17 -1.05 16 26 C 0.52 4.87 7.72 -11.18 -0.09 4.79 16 27 O -0.54 -6.92 17.91 5.55 0.10 -6.82 16 28 N -0.66 -5.31 5.37 -9.96 -0.05 -5.37 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 31 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.13 8.54 -40.82 -0.35 5.79 16 36 H 0.09 0.91 7.65 -51.92 -0.40 0.52 16 37 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.14 1.02 6.29 -52.48 -0.33 0.69 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.41 2.70 8.84 -40.82 -0.36 2.34 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -32.82 369.83 -9.00 -41.82 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.16 Total: 6.80 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.21 Total: -3.26 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.30 Total: -42.38 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.48 Total: -23.49 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.82 -9.00 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358053874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.676 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds