Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46838 * 2 1 4 4 H 1.09005 * 109.47419 * 305.00155 * 3 2 1 5 5 C 1.50698 * 109.47052 * 185.00103 * 3 2 1 6 6 H 1.07997 * 120.00406 * 240.00063 * 5 3 2 7 7 C 1.37884 * 119.99777 * 60.00034 * 5 3 2 8 8 N 1.31509 * 120.00255 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46839 * 60.00148 * 9 7 5 11 11 H 1.48505 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47430 * 300.00433 * 9 7 5 13 13 N 1.46497 * 109.47255 * 65.00520 * 3 2 1 14 14 C 1.34781 * 119.99772 * 274.99647 * 13 3 2 15 15 O 1.21277 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00007 * 179.97438 * 14 13 3 17 17 O 1.42897 * 109.47289 * 179.97438 * 16 14 13 18 18 C 1.35968 * 117.00336 * 180.02562 * 17 16 14 19 19 C 1.38750 * 119.98506 * 0.28522 * 18 17 16 20 20 C 1.38069 * 120.03300 * 180.27745 * 19 18 17 21 21 C 1.38850 * 119.96811 * 359.73020 * 20 19 18 22 22 C 1.38844 * 119.96264 * 359.97438 * 21 20 19 23 23 C 1.38078 * 120.01868 * 0.02562 * 22 21 20 24 24 C 1.50664 * 119.83950 * 179.97438 * 22 21 20 25 25 C 1.52902 * 109.53776 * 326.01438 * 24 22 21 26 26 C 1.50500 * 109.90469 * 48.65521 * 25 24 22 27 27 O 1.21291 * 119.61984 * 144.78646 * 26 25 24 28 28 N 1.34558 * 120.75963 * 324.76029 * 26 25 24 29 29 H 1.09004 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46750 * 299.99398 * 1 2 3 31 31 H 1.08997 * 109.47677 * 59.99765 * 1 2 3 32 32 H 1.09002 * 109.46750 * 240.00602 * 2 1 3 33 33 H 1.08996 * 109.47281 * 119.99877 * 2 1 3 34 34 H 0.97003 * 120.00600 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00588 * 94.99483 * 13 3 2 36 36 H 1.09007 * 109.46998 * 60.00104 * 16 14 13 37 37 H 1.08996 * 109.47277 * 300.00576 * 16 14 13 38 38 H 1.08005 * 119.98342 * 359.97438 * 19 18 17 39 39 H 1.08003 * 120.01579 * 179.70037 * 20 19 18 40 40 H 1.08002 * 120.00221 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46045 * 86.03351 * 24 22 21 42 42 H 1.08997 * 109.46156 * 205.99193 * 24 22 21 43 43 H 1.08997 * 109.39770 * 168.78496 * 25 24 22 44 44 H 1.08996 * 109.39451 * 288.61094 * 25 24 22 45 45 H 0.97007 * 119.78483 * 180.83435 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8814 -1.3820 10 1 6.5974 0.1474 -0.2350 11 1 6.3977 0.2168 -2.6506 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6327 0.4342 16 6 0.0363 3.3376 2.6549 17 8 -1.2888 3.8578 2.5300 18 6 -1.8039 4.5011 3.6115 19 6 -1.0457 4.6331 4.7660 20 6 -1.5699 5.2811 5.8667 21 6 -2.8545 5.8058 5.8160 22 6 -3.6103 5.6786 4.6582 23 6 -3.0850 5.0304 3.5581 24 6 -5.0041 6.2485 4.6065 25 6 -5.6571 6.1283 5.9838 26 6 -4.7190 6.6427 7.0423 27 8 -5.1659 7.2263 8.0071 28 7 -3.3902 6.4622 6.9309 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8291 -0.0609 -2.9501 35 1 2.2719 2.1231 1.9978 36 1 0.7277 4.1529 2.8680 37 1 0.0674 2.6129 3.4685 38 1 -0.0467 4.2244 4.8053 39 1 -0.9813 5.3795 6.7668 40 1 -3.6733 4.9312 2.6578 41 1 -4.9566 7.2984 4.3174 42 1 -5.5949 5.6971 3.8751 43 1 -6.5771 6.7126 6.0004 44 1 -5.8888 5.0824 6.1845 45 1 -2.7995 6.7890 7.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358053874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = -115.396476 kcal Electronic energy + Delta-G solvation = -27477.142074 eV Core-core repulsion = 23458.421763 eV Total energy + Delta-G solvation = -4018.720311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03640 -41.09006 -40.18126 -38.72803 -36.88272 -35.61279 -34.92282 -34.32180 -32.95021 -31.33875 -30.28725 -29.32934 -28.12830 -25.63581 -24.94537 -23.82740 -23.56353 -22.21692 -21.18071 -20.26834 -19.21177 -18.97164 -18.49471 -18.03979 -17.40887 -17.36048 -17.04458 -16.93500 -16.27274 -15.91784 -15.83538 -15.61962 -15.06565 -14.88452 -14.60028 -14.56242 -14.27245 -14.18287 -13.89852 -13.65645 -13.48365 -13.25767 -13.15073 -12.90683 -12.82263 -12.64457 -12.47333 -12.31465 -12.17087 -12.05469 -11.81157 -11.56652 -11.15775 -11.05367 -11.01787 -10.66548 -10.48941 -9.86431 -9.65549 -8.65761 -8.14273 -6.31679 0.18254 0.28813 1.47074 1.48483 1.48611 1.56113 1.76230 1.77472 2.06779 2.42481 2.72719 2.92603 3.15501 3.41117 3.68695 3.72130 3.83223 3.95980 4.07880 4.19569 4.20375 4.21295 4.32717 4.41796 4.50791 4.58580 4.77136 4.79393 4.87554 4.93429 4.94356 5.07459 5.10451 5.18441 5.27560 5.33918 5.44617 5.56472 5.58299 5.62061 5.75936 5.80764 5.92622 6.11711 6.18196 6.41411 6.76170 6.96248 6.96718 7.35103 7.56552 8.90759 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.001978 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.076449 B =14154.045614 C =14711.206053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.699 5.699 14 C 0.496 3.504 15 O -0.576 6.576 16 C 0.050 3.950 17 O -0.317 6.317 18 C 0.097 3.903 19 C -0.182 4.182 20 C -0.101 4.101 21 C 0.105 3.895 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.076 4.076 25 C -0.133 4.133 26 C 0.517 3.483 27 O -0.577 6.577 28 N -0.653 5.653 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.408 0.592 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 9.497 18.486 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.350 5.350 14 C 0.282 3.718 15 O -0.456 6.456 16 C -0.028 4.028 17 O -0.230 6.230 18 C 0.051 3.949 19 C -0.201 4.201 20 C -0.121 4.121 21 C 0.011 3.989 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.172 4.172 26 C 0.307 3.693 27 O -0.457 6.457 28 N -0.298 5.298 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -12.017 9.610 17.863 23.576 hybrid contribution 1.695 -0.074 0.032 1.697 sum -10.323 9.536 17.895 22.753 Atomic orbital electron populations 1.21683 0.97101 0.99137 1.00199 1.21798 0.93587 0.99188 1.01496 1.18373 0.93682 0.89124 0.81176 0.98488 1.21551 0.91291 1.38939 1.06747 0.90622 1.25776 1.03230 0.94476 0.95109 1.70042 1.37127 1.38304 1.09855 0.85433 0.79207 0.78411 0.77478 1.18823 1.21545 1.19669 1.46090 1.14993 1.55962 1.17933 1.20702 0.82301 0.79156 0.89626 1.90705 1.52357 1.60264 1.42236 1.22593 0.83762 1.00511 0.95972 1.86157 1.30739 1.69714 1.36402 1.19275 0.94013 0.94781 0.86781 1.21358 1.01851 1.04396 0.92465 1.20822 0.93902 0.97718 0.99660 1.17644 0.94632 0.99437 0.87224 1.19451 0.97459 1.00228 0.91318 1.20231 0.93813 1.01010 0.99646 1.20515 0.90867 1.02839 0.97043 1.21737 0.98342 1.05199 0.91969 1.21286 0.83146 0.77562 0.87316 1.90763 1.76764 1.43259 1.34900 1.43510 1.07811 1.56143 1.22289 0.93600 0.93711 0.95801 0.91060 0.93659 0.92651 0.75622 0.86316 0.86071 0.82553 0.82438 0.84311 0.88997 0.86867 0.85948 0.86580 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.52 71.98 0.61 -4.84 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.69 2.24 44.24 0.10 13.79 16 4 H 0.00 -0.17 7.58 -2.38 -0.02 -0.18 16 5 C -0.55 -27.56 8.73 25.60 0.22 -27.33 16 6 H 0.08 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -51.22 11.29 21.45 0.24 -50.98 16 9 Si 0.97 40.66 29.54 68.60 2.03 42.69 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -26.11 5.02 -446.11 -2.24 -28.35 16 14 C 0.50 18.10 6.47 87.66 0.57 18.67 16 15 O -0.58 -27.06 13.64 16.02 0.22 -26.84 16 16 C 0.05 1.18 5.22 71.24 0.37 1.55 16 17 O -0.32 -8.90 9.67 -74.16 -0.72 -9.61 16 18 C 0.10 2.08 6.69 22.51 0.15 2.23 16 19 C -0.18 -2.81 9.03 22.35 0.20 -2.61 16 20 C -0.10 -1.30 9.92 22.38 0.22 -1.08 16 21 C 0.11 1.55 6.51 38.12 0.25 1.80 16 22 C -0.08 -1.26 5.66 -19.77 -0.11 -1.37 16 23 C -0.13 -2.45 9.62 22.35 0.22 -2.23 16 24 C -0.08 -0.78 6.00 29.80 0.18 -0.60 16 25 C -0.13 -1.44 6.07 29.75 0.18 -1.26 16 26 C 0.52 8.94 7.72 87.63 0.68 9.61 16 27 O -0.58 -14.53 17.91 -3.06 -0.05 -14.59 16 28 N -0.65 -9.26 5.37 -303.93 -1.63 -10.89 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.88 5.65 -2.39 -0.01 1.87 16 31 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 32 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.41 12.01 8.54 -92.71 -0.79 11.22 16 36 H 0.12 2.07 7.65 -2.38 -0.02 2.05 16 37 H 0.12 2.04 7.67 -2.39 -0.02 2.02 16 38 H 0.16 1.68 6.29 -2.91 -0.02 1.67 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 0.80 8.06 -2.39 -0.02 0.78 16 43 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.42 4.70 8.84 -92.70 -0.82 3.88 16 Total: -1.00 -74.73 369.83 1.73 -73.00 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.57 Total: 23.66 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.45 Total: 1.91 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -3.63 Total: -90.22 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.55 Total: -51.04 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -74.73 1.73 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358053874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.395 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds