Wall clock time and date at job start Tue Mar 31 2020 17:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48506 * 109.47256 * 275.09053 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 O 1.42898 * 109.47657 * 179.97438 * 16 14 13 18 18 C 1.35963 * 117.00344 * 179.97438 * 17 16 14 19 19 C 1.38740 * 119.98828 * 0.02562 * 18 17 16 20 20 C 1.38073 * 120.03739 * 180.02562 * 19 18 17 21 21 C 1.38846 * 119.96578 * 359.97438 * 20 19 18 22 22 C 1.38840 * 119.96145 * 0.02562 * 21 20 19 23 23 C 1.38076 * 120.02061 * 359.73732 * 22 21 20 24 24 C 1.50684 * 119.84207 * 179.97438 * 22 21 20 25 25 C 1.52894 * 109.53923 * 326.06888 * 24 22 21 26 26 C 1.50499 * 109.91265 * 48.64395 * 25 24 22 27 27 O 1.21289 * 119.62487 * 144.75804 * 26 25 24 28 28 N 1.34564 * 120.75066 * 324.74027 * 26 25 24 29 29 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 30 30 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 32 32 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 34 34 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 36 36 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 37 37 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 38 38 H 1.08008 * 119.98060 * 359.97438 * 19 18 17 39 39 H 1.08001 * 120.01793 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00833 * 180.25359 * 23 22 21 41 41 H 1.09007 * 109.46009 * 206.04674 * 24 22 21 42 42 H 1.09001 * 109.44358 * 86.08703 * 24 22 21 43 43 H 1.08994 * 109.39921 * 288.50400 * 25 24 22 44 44 H 1.09009 * 109.39507 * 168.77178 * 25 24 22 45 45 H 0.96999 * 119.78165 * 180.82691 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2162 3.0796 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 8 -1.2622 3.8472 -2.5747 18 6 -1.7659 4.4862 -3.6639 19 6 -0.9976 4.6091 -4.8126 20 6 -1.5078 5.2583 -5.9192 21 6 -2.7908 5.7879 -5.8823 22 6 -3.5590 5.6646 -4.7324 23 6 -3.0495 5.0108 -3.6280 24 6 -4.9508 6.2408 -4.6950 25 6 -4.9982 7.5178 -5.5345 26 6 -4.3681 7.2712 -6.8788 27 8 -4.8170 7.8222 -7.8616 28 7 -3.3121 6.4464 -7.0027 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8280 1.5271 2.3972 35 1 2.2931 2.1156 -1.9978 36 1 0.7582 4.1421 -2.8919 37 1 0.1042 2.5998 -3.4936 38 1 0.0005 4.1974 -4.8410 39 1 -0.9093 5.3542 -6.8131 40 1 -3.6488 4.9114 -2.7350 41 1 -5.2200 6.4734 -3.6646 42 1 -5.6554 5.5140 -5.0992 43 1 -4.4546 8.3099 -5.0197 44 1 -6.0358 7.8226 -5.6716 45 1 -2.9094 6.3069 -7.8741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358053875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:57 Heat of formation + Delta-G solvation = -117.169804 kcal Electronic energy + Delta-G solvation = -27564.578754 eV Core-core repulsion = 23545.781546 eV Total energy + Delta-G solvation = -4018.797209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04039 -41.12764 -40.22571 -38.74337 -36.91850 -35.61702 -34.92458 -34.40199 -33.31039 -31.34831 -30.34078 -29.56014 -28.34136 -25.63000 -24.68366 -23.83602 -23.57481 -22.24882 -21.29268 -20.27524 -19.39746 -19.02015 -18.57526 -18.09664 -17.68943 -17.40868 -17.08074 -16.90719 -16.29330 -15.92995 -15.81143 -15.66679 -15.10644 -14.89171 -14.77101 -14.62199 -14.37901 -14.14311 -13.92805 -13.77459 -13.74377 -13.61901 -13.27180 -12.93170 -12.84049 -12.61791 -12.49730 -12.32792 -12.31672 -11.86069 -11.81451 -11.67066 -11.20278 -11.16191 -11.02482 -10.84614 -10.67611 -9.86684 -9.73905 -8.66100 -8.38216 -6.43556 0.17994 0.28507 1.29321 1.35090 1.45124 1.48127 1.70822 1.73338 2.06387 2.27605 2.72393 2.80992 3.05636 3.40713 3.68069 3.70883 3.82096 3.94339 4.07129 4.19336 4.19957 4.20243 4.32264 4.33373 4.41465 4.42890 4.56205 4.78602 4.83686 4.87385 4.93157 4.93919 5.10249 5.12385 5.18393 5.25128 5.27825 5.33422 5.42229 5.56988 5.58010 5.74531 5.76142 6.09666 6.14285 6.40579 6.62023 6.88831 6.95896 7.22181 7.45403 8.76407 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.002090 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.231361 B =13392.287468 C =13616.658436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.244 3.756 4 H 0.028 0.972 5 C -0.524 4.524 6 H 0.061 0.939 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.254 1.254 12 H -0.280 1.280 13 N -0.696 5.696 14 C 0.499 3.501 15 O -0.573 6.573 16 C 0.047 3.953 17 O -0.315 6.315 18 C 0.098 3.902 19 C -0.182 4.182 20 C -0.102 4.102 21 C 0.105 3.895 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.134 4.134 26 C 0.517 3.483 27 O -0.577 6.577 28 N -0.653 5.653 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.409 0.591 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 8.055 -16.213 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.140 3.860 4 H 0.045 0.955 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.178 1.178 12 H -0.206 1.206 13 N -0.348 5.348 14 C 0.285 3.715 15 O -0.453 6.453 16 C -0.031 4.031 17 O -0.228 6.228 18 C 0.052 3.948 19 C -0.201 4.201 20 C -0.122 4.122 21 C 0.011 3.989 22 C -0.085 4.085 23 C -0.146 4.146 24 C -0.112 4.112 25 C -0.173 4.173 26 C 0.307 3.693 27 O -0.457 6.457 28 N -0.298 5.298 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.180 8.355 -15.610 25.377 hybrid contribution 0.896 -0.071 0.218 0.925 sum -17.284 8.284 -15.392 24.582 Atomic orbital electron populations 1.21779 0.95958 1.00304 1.01131 1.22012 0.94834 0.97998 1.01465 1.18887 0.93273 0.90212 0.83606 0.95458 1.21207 0.90167 1.50744 0.94124 0.92071 1.25551 0.95667 0.93995 1.01435 1.69966 1.11022 1.50684 1.25090 0.86146 0.80099 0.79172 0.79980 1.20192 1.17776 1.20555 1.46144 1.14895 1.56083 1.17658 1.20674 0.82180 0.78957 0.89655 1.90697 1.51623 1.60168 1.42766 1.22602 0.83787 1.00617 0.96072 1.86144 1.30626 1.69907 1.36145 1.19246 0.94127 0.94851 0.86552 1.21357 1.01871 1.04435 0.92452 1.20820 0.93043 0.98570 0.99768 1.17648 0.93977 0.99514 0.87800 1.19460 0.96984 0.99953 0.92098 1.20229 0.93699 1.01000 0.99661 1.20518 0.92077 0.95649 1.02969 1.21736 1.04211 1.00413 0.90944 1.21290 0.78940 0.76719 0.92372 1.90763 1.62954 1.50303 1.41676 1.43516 1.31879 1.43874 1.10519 0.93073 0.92449 0.95052 0.91500 0.93201 0.92097 0.75470 0.86508 0.85938 0.82624 0.82568 0.84160 0.86830 0.88922 0.86643 0.85959 0.74611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.53 71.98 0.61 -4.36 16 2 C -0.12 -4.99 5.54 30.59 0.17 -4.82 16 3 C 0.24 10.77 1.82 44.25 0.08 10.85 16 4 H 0.03 1.36 4.92 -2.39 -0.01 1.34 16 5 C -0.52 -26.87 9.05 25.60 0.23 -26.63 16 6 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 7 C 0.03 1.86 5.47 84.65 0.46 2.32 16 8 N -0.93 -53.90 13.96 21.45 0.30 -53.60 16 9 Si 0.92 43.52 26.69 68.60 1.83 45.35 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.25 -11.69 6.88 99.48 0.68 -11.01 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.70 -24.36 5.03 -446.08 -2.24 -26.61 16 14 C 0.50 16.77 6.51 87.66 0.57 17.34 16 15 O -0.57 -24.44 13.64 15.99 0.22 -24.22 16 16 C 0.05 1.05 5.22 71.24 0.37 1.42 16 17 O -0.32 -8.29 9.67 -74.10 -0.72 -9.01 16 18 C 0.10 1.99 6.69 22.50 0.15 2.14 16 19 C -0.18 -2.72 9.03 22.35 0.20 -2.51 16 20 C -0.10 -1.28 9.92 22.38 0.22 -1.06 16 21 C 0.11 1.51 6.51 38.12 0.25 1.75 16 22 C -0.08 -1.20 5.66 -19.76 -0.11 -1.32 16 23 C -0.13 -2.29 9.63 22.35 0.22 -2.07 16 24 C -0.08 -0.72 5.99 29.81 0.18 -0.55 16 25 C -0.13 -1.40 6.07 29.75 0.18 -1.22 16 26 C 0.52 8.82 7.72 87.63 0.68 9.49 16 27 O -0.58 -14.44 17.91 -3.06 -0.05 -14.50 16 28 N -0.65 -9.12 5.37 -303.94 -1.63 -10.75 16 29 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 30 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.03 1.26 7.88 -2.39 -0.02 1.24 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 2.11 7.90 -2.38 -0.02 2.09 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.41 11.78 8.59 -92.71 -0.80 10.98 16 36 H 0.12 1.96 7.66 -2.38 -0.02 1.95 16 37 H 0.12 1.87 7.66 -2.38 -0.02 1.85 16 38 H 0.16 1.62 6.29 -2.91 -0.02 1.61 16 39 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.11 0.72 8.06 -2.38 -0.02 0.70 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.42 4.64 8.84 -92.71 -0.82 3.82 16 Total: -1.00 -74.46 369.33 1.57 -72.89 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.59 Total: 19.65 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.46 Total: 0.78 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.58 Total: -90.95 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.55 Total: -47.72 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.83 Total: 45.35 kcal Total: -74.46 1.57 -72.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358053875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.281 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds