Wall clock time and date at job start Tue Mar 31 2020 17:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00095 * 2 1 4 4 N 1.46500 * 109.47627 * 124.99928 * 3 2 1 5 5 C 1.46505 * 119.99408 * 270.00396 * 4 3 2 6 6 C 1.50706 * 109.46769 * 269.99325 * 5 4 3 7 7 H 1.07996 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99786 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99708 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00225 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46911 * 90.00166 * 10 8 6 12 12 H 1.48498 * 109.46886 * 209.99959 * 10 8 6 13 13 H 1.48496 * 109.46839 * 330.00056 * 10 8 6 14 14 C 1.34771 * 120.00201 * 89.99479 * 4 3 2 15 15 O 1.21283 * 120.00137 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00069 * 0.02562 * 14 4 3 17 17 N 1.46504 * 109.47310 * 179.97438 * 16 14 4 18 18 C 1.34695 * 123.06819 * 89.99803 * 17 16 14 19 19 O 1.21233 * 126.39055 * 11.92442 * 18 17 16 20 20 C 1.53783 * 107.22043 * 191.90320 * 18 17 16 21 21 H 1.09001 * 113.73509 * 212.29297 * 20 18 17 22 22 C 1.53088 * 104.78916 * 87.26099 * 20 18 17 23 23 C 1.48932 * 113.36762 * 214.76619 * 22 20 18 24 24 C 1.28900 * 124.81897 * 17.41290 * 23 22 20 25 25 C 1.49605 * 123.47731 * 357.81378 * 24 23 22 26 26 C 1.49325 * 113.58556 * 11.10960 * 25 24 23 27 27 H 1.09002 * 107.41656 * 205.20059 * 26 25 24 28 28 C 1.35183 * 123.06978 * 270.00358 * 17 16 14 29 29 O 1.21222 * 126.85861 * 9.73095 * 28 17 16 30 30 H 1.07998 * 119.99696 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99853 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00184 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47069 * 4.99382 * 3 2 1 34 34 H 1.09003 * 109.46935 * 244.99949 * 3 2 1 35 35 H 1.08995 * 109.47358 * 29.99141 * 5 4 3 36 36 H 1.08998 * 109.46897 * 150.00025 * 5 4 3 37 37 H 0.97003 * 119.99834 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47241 * 59.99699 * 16 14 4 39 39 H 1.08998 * 109.47186 * 299.99916 * 16 14 4 40 40 H 1.09005 * 108.70168 * 335.77319 * 22 20 18 41 41 H 1.09004 * 108.69985 * 93.89069 * 22 20 18 42 42 H 1.08004 * 117.56066 * 197.45129 * 23 22 20 43 43 H 1.08004 * 118.16507 * 177.76108 * 24 23 22 44 44 H 1.09002 * 108.63914 * 250.09009 * 25 24 23 45 45 H 1.09005 * 108.64122 * 132.12684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3032 3.8371 1.6364 8 6 2.5191 4.0667 3.6084 9 7 2.7687 5.3571 3.6570 10 14 1.7244 3.2135 5.0678 11 1 2.7803 2.7224 5.9892 12 1 0.8484 4.1739 5.7857 13 1 0.9128 2.0661 4.5885 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6972 0.3182 -0.3481 17 7 6.0918 -0.1200 -0.2516 18 6 6.4466 -1.3696 0.1048 19 8 5.7107 -2.3291 0.1912 20 6 7.9592 -1.3520 0.3814 21 1 8.4610 -2.2880 0.1360 22 6 8.0828 -0.9489 1.8531 23 6 9.2785 -0.1075 2.1367 24 6 9.9607 0.5262 1.2453 25 6 9.6652 0.4620 -0.2199 26 6 8.3581 -0.1861 -0.5379 27 1 8.4303 -0.5874 -1.5488 28 6 7.1402 0.6928 -0.5122 29 8 7.1043 1.8913 -0.6901 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 1.4887 1.6968 2.5458 36 1 3.0988 1.3605 3.2259 37 1 2.5397 5.8658 4.4505 38 1 4.6126 1.0951 -1.1080 39 1 4.0681 -0.5285 -0.6225 40 1 7.1891 -0.3946 2.1398 41 1 8.1421 -1.8529 2.4592 42 1 9.5973 -0.0227 3.1651 43 1 10.7887 1.1360 1.5754 44 1 10.4606 -0.0982 -0.7115 45 1 9.6571 1.4766 -0.6184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359385501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:35 Heat of formation + Delta-G solvation = -42.546002 kcal Electronic energy + Delta-G solvation = -29654.342603 eV Core-core repulsion = 25638.781325 eV Total energy + Delta-G solvation = -4015.561278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41304 -39.26283 -38.58503 -37.53946 -35.97471 -35.50072 -33.26102 -32.41863 -32.11071 -31.43546 -29.22551 -27.38101 -25.60173 -25.11486 -24.07357 -22.39086 -22.02973 -20.26368 -19.81534 -18.63436 -18.18223 -17.28074 -17.01138 -16.92200 -16.53464 -16.09139 -15.69443 -15.47296 -14.97729 -14.76761 -14.45732 -14.38714 -14.23958 -13.90807 -13.52753 -13.44112 -13.26755 -13.04496 -12.86267 -12.61608 -12.39466 -12.13351 -12.07838 -11.82919 -11.66051 -11.41087 -11.18714 -10.97878 -10.74332 -10.56665 -10.31431 -10.20468 -10.16160 -9.92991 -9.57244 -9.32662 -9.12345 -8.96692 -8.59781 -7.85458 -6.09194 -4.08400 1.51161 2.19509 2.24041 2.35604 2.64874 3.12756 3.28164 3.34179 3.36149 3.65068 3.80172 4.02790 4.11290 4.38555 4.46028 4.80024 4.83975 4.89791 4.98132 5.01693 5.06613 5.11143 5.18797 5.23597 5.27581 5.30925 5.36658 5.48897 5.52700 5.60113 5.67632 5.90029 5.92014 5.98364 6.06885 6.49501 6.62980 6.67583 6.70275 6.79460 6.84158 6.89249 7.24457 7.24853 7.58384 7.72338 8.08833 8.44148 8.77419 8.95010 9.50314 11.04083 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004320 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.616172 B = 6479.456540 C = 7704.446311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.133 3.867 4 N -0.583 5.583 5 C 0.219 3.781 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.498 3.502 15 O -0.528 6.528 16 C 0.077 3.923 17 N -0.567 5.567 18 C 0.533 3.467 19 O -0.477 6.477 20 C -0.099 4.099 21 H 0.133 0.867 22 C -0.095 4.095 23 C -0.141 4.141 24 C -0.159 4.159 25 C -0.071 4.071 26 C -0.122 4.122 27 H 0.113 0.887 28 C 0.541 3.459 29 O -0.456 6.456 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 -15.138 -11.427 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.009 3.991 4 N -0.314 5.314 5 C 0.099 3.901 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.283 3.717 15 O -0.405 6.405 16 C -0.048 4.048 17 N -0.310 5.310 18 C 0.322 3.678 19 O -0.348 6.348 20 C -0.120 4.120 21 H 0.151 0.849 22 C -0.132 4.132 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.108 4.108 26 C -0.143 4.143 27 H 0.131 0.869 28 C 0.330 3.670 29 O -0.324 6.324 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.181 -14.775 -10.852 20.502 hybrid contribution -0.726 -0.167 0.881 1.154 sum 8.455 -14.943 -9.971 19.854 Atomic orbital electron populations 1.23858 0.95791 1.01938 0.99991 1.23441 0.96546 0.98922 1.00409 1.20679 0.93293 0.95753 0.89362 1.47855 1.10274 1.59952 1.13307 1.19683 0.94961 0.95230 0.80250 1.21308 1.41273 0.90994 1.03216 0.90655 1.24836 0.95254 0.94711 0.98056 1.69901 1.47636 1.06593 1.29248 0.86880 0.79892 0.79703 0.83415 1.19947 1.20990 1.19029 1.20378 0.82730 0.79042 0.89560 1.90661 1.52314 1.56065 1.41456 1.21734 0.81723 1.02675 0.98635 1.46872 1.08080 1.13329 1.62755 1.21643 0.91677 0.81165 0.73319 1.90740 1.60115 1.35916 1.48037 1.22649 0.91886 1.00117 0.97350 0.84907 1.20246 0.99501 1.00935 0.92566 1.21485 0.96107 0.98473 0.99824 1.21694 1.01232 1.00338 0.94409 1.19321 0.93747 1.02327 0.95411 1.21024 0.95162 0.95835 1.02302 0.86904 1.20578 0.85478 0.86941 0.74043 1.90799 1.85236 1.12002 1.44356 0.88608 0.88119 0.87575 0.88748 0.90525 0.94999 0.94617 0.92545 0.86513 0.86458 0.88358 0.89551 0.87169 0.86891 0.89339 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.73 16 2 C -0.17 -2.33 9.74 -36.03 -0.35 -2.68 16 3 C 0.13 2.07 5.65 -5.19 -0.03 2.04 16 4 N -0.58 -12.02 2.44 -176.43 -0.43 -12.45 16 5 C 0.22 5.41 4.23 -5.19 -0.02 5.39 16 6 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 7 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 8 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 10 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.50 10.28 7.74 -10.99 -0.09 10.19 16 15 O -0.53 -12.96 15.22 5.55 0.08 -12.87 16 16 C 0.08 1.19 4.71 -5.19 -0.02 1.16 16 17 N -0.57 -8.43 2.03 -115.47 -0.23 -8.67 16 18 C 0.53 7.37 6.72 -9.46 -0.06 7.31 16 19 O -0.48 -7.64 17.58 5.60 0.10 -7.54 16 20 C -0.10 -1.02 4.07 -89.78 -0.37 -1.38 16 21 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.10 -1.16 5.18 -28.68 -0.15 -1.31 16 23 C -0.14 -1.59 9.75 -36.31 -0.35 -1.95 16 24 C -0.16 -1.63 9.88 -35.99 -0.36 -1.98 16 25 C -0.07 -0.64 5.67 -30.22 -0.17 -0.81 16 26 C -0.12 -1.22 2.39 -93.43 -0.22 -1.45 16 27 H 0.11 0.77 8.11 -51.93 -0.42 0.35 16 28 C 0.54 7.99 7.43 -11.04 -0.08 7.91 16 29 O -0.46 -8.38 17.39 5.61 0.10 -8.28 16 30 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.10 1.18 7.84 -52.48 -0.41 0.77 16 32 H 0.11 1.36 7.83 -52.49 -0.41 0.95 16 33 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 34 H 0.08 0.98 6.44 -51.93 -0.33 0.65 16 35 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 36 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.12 1.60 7.28 -51.93 -0.38 1.22 16 39 H 0.12 1.52 7.46 -51.93 -0.39 1.13 16 40 H 0.10 1.62 6.62 -51.93 -0.34 1.28 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.11 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.89 7.79 -51.93 -0.40 0.49 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -37.43 375.77 -7.26 -44.69 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.35 Total: 2.35 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -2.30 Total: 7.09 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.11 Total: -48.26 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: 0.28 Total: -28.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.43 -7.26 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.144 kcal (2) G-P(sol) polarization free energy of solvation -37.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds