Wall clock time and date at job start Tue Mar 31 2020 17:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00095 * 2 1 4 4 N 1.46500 * 109.47627 * 124.99928 * 3 2 1 5 5 C 1.46505 * 119.99408 * 270.00396 * 4 3 2 6 6 C 1.50706 * 109.46769 * 269.99325 * 5 4 3 7 7 H 1.07996 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99786 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99708 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00225 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46911 * 90.00166 * 10 8 6 12 12 H 1.48498 * 109.46886 * 209.99959 * 10 8 6 13 13 H 1.48496 * 109.46839 * 330.00056 * 10 8 6 14 14 C 1.34771 * 120.00201 * 89.99479 * 4 3 2 15 15 O 1.21283 * 120.00137 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00069 * 0.02562 * 14 4 3 17 17 N 1.46504 * 109.47310 * 179.97438 * 16 14 4 18 18 C 1.34695 * 123.06819 * 89.99803 * 17 16 14 19 19 O 1.21233 * 126.39055 * 11.92442 * 18 17 16 20 20 C 1.53783 * 107.22043 * 191.90320 * 18 17 16 21 21 H 1.09001 * 113.73509 * 212.29297 * 20 18 17 22 22 C 1.53088 * 104.78916 * 87.26099 * 20 18 17 23 23 C 1.48932 * 113.36762 * 214.76619 * 22 20 18 24 24 C 1.28900 * 124.81897 * 17.41290 * 23 22 20 25 25 C 1.49605 * 123.47731 * 357.81378 * 24 23 22 26 26 C 1.49325 * 113.58556 * 11.10960 * 25 24 23 27 27 H 1.09002 * 107.41656 * 205.20059 * 26 25 24 28 28 C 1.35183 * 123.06978 * 270.00358 * 17 16 14 29 29 O 1.21222 * 126.85861 * 9.73095 * 28 17 16 30 30 H 1.07998 * 119.99696 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99853 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00184 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47069 * 4.99382 * 3 2 1 34 34 H 1.09003 * 109.46935 * 244.99949 * 3 2 1 35 35 H 1.08995 * 109.47358 * 29.99141 * 5 4 3 36 36 H 1.08998 * 109.46897 * 150.00025 * 5 4 3 37 37 H 0.97003 * 119.99834 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47241 * 59.99699 * 16 14 4 39 39 H 1.08998 * 109.47186 * 299.99916 * 16 14 4 40 40 H 1.09005 * 108.70168 * 335.77319 * 22 20 18 41 41 H 1.09004 * 108.69985 * 93.89069 * 22 20 18 42 42 H 1.08004 * 117.56066 * 197.45129 * 23 22 20 43 43 H 1.08004 * 118.16507 * 177.76108 * 24 23 22 44 44 H 1.09002 * 108.63914 * 250.09009 * 25 24 23 45 45 H 1.09005 * 108.64122 * 132.12684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3032 3.8371 1.6364 8 6 2.5191 4.0667 3.6084 9 7 2.7687 5.3571 3.6570 10 14 1.7244 3.2135 5.0678 11 1 2.7803 2.7224 5.9892 12 1 0.8484 4.1739 5.7857 13 1 0.9128 2.0661 4.5885 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6972 0.3182 -0.3481 17 7 6.0918 -0.1200 -0.2516 18 6 6.4466 -1.3696 0.1048 19 8 5.7107 -2.3291 0.1912 20 6 7.9592 -1.3520 0.3814 21 1 8.4610 -2.2880 0.1360 22 6 8.0828 -0.9489 1.8531 23 6 9.2785 -0.1075 2.1367 24 6 9.9607 0.5262 1.2453 25 6 9.6652 0.4620 -0.2199 26 6 8.3581 -0.1861 -0.5379 27 1 8.4303 -0.5874 -1.5488 28 6 7.1402 0.6928 -0.5122 29 8 7.1043 1.8913 -0.6901 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 1.4887 1.6968 2.5458 36 1 3.0988 1.3605 3.2259 37 1 2.5397 5.8658 4.4505 38 1 4.6126 1.0951 -1.1080 39 1 4.0681 -0.5285 -0.6225 40 1 7.1891 -0.3946 2.1398 41 1 8.1421 -1.8529 2.4592 42 1 9.5973 -0.0227 3.1651 43 1 10.7887 1.1360 1.5754 44 1 10.4606 -0.0982 -0.7115 45 1 9.6571 1.4766 -0.6184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359385501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:34 Heat of formation + Delta-G solvation = -67.972830 kcal Electronic energy + Delta-G solvation = -29655.445193 eV Core-core repulsion = 25638.781325 eV Total energy + Delta-G solvation = -4016.663868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.47168 -40.82438 -39.76056 -38.53618 -37.44341 -36.74382 -35.13878 -33.84152 -33.38138 -32.27714 -30.89258 -28.86026 -26.99715 -26.13856 -25.19043 -24.14888 -22.99046 -21.53321 -20.91792 -20.04437 -19.21843 -19.10526 -18.55522 -18.28841 -17.57147 -17.21736 -16.97279 -16.73686 -16.47390 -16.07913 -15.87139 -15.57041 -15.43932 -15.28667 -14.82264 -14.57141 -14.47617 -14.31478 -14.22371 -13.73130 -13.67394 -13.50438 -13.46283 -13.14449 -13.00844 -12.93353 -12.57516 -12.33475 -12.29812 -12.00435 -11.80459 -11.63974 -11.57272 -11.21565 -11.02168 -10.88837 -10.56601 -10.38304 -9.90388 -9.58735 -8.39124 -6.44902 0.41094 1.07066 1.26952 1.30442 1.31367 1.39968 1.40675 1.53513 1.60093 2.25304 2.29560 2.76878 2.94662 3.06939 3.26255 3.43880 3.65853 3.83631 3.91035 4.01399 4.04124 4.13104 4.15473 4.20160 4.21690 4.34965 4.38364 4.50113 4.68253 4.74103 4.78482 4.80870 4.83023 4.95806 5.02317 5.04118 5.17167 5.37808 5.41571 5.60933 5.67856 5.68294 5.85312 6.01891 6.16077 6.16878 6.44994 6.56537 6.63013 7.09785 7.23063 8.78029 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004320 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.616172 B = 6479.456540 C = 7704.446311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.188 4.188 3 C 0.128 3.872 4 N -0.590 5.590 5 C 0.231 3.769 6 C -0.537 4.537 7 H 0.026 0.974 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.278 1.278 12 H -0.271 1.271 13 H -0.239 1.239 14 C 0.485 3.515 15 O -0.579 6.579 16 C 0.084 3.916 17 N -0.574 5.574 18 C 0.529 3.471 19 O -0.501 6.501 20 C -0.079 4.079 21 H 0.181 0.819 22 C -0.094 4.094 23 C -0.166 4.166 24 C -0.153 4.153 25 C -0.073 4.073 26 C -0.116 4.116 27 H 0.160 0.840 28 C 0.532 3.468 29 O -0.505 6.505 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.015 0.985 37 H 0.269 0.731 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -18.118 -12.648 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.006 3.994 4 N -0.320 5.320 5 C 0.109 3.891 6 C -0.575 4.575 7 H 0.045 0.955 8 C -0.185 4.185 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.196 1.196 13 H -0.162 1.162 14 C 0.272 3.728 15 O -0.459 6.459 16 C -0.041 4.041 17 N -0.318 5.318 18 C 0.320 3.680 19 O -0.373 6.373 20 C -0.099 4.099 21 H 0.198 0.802 22 C -0.132 4.132 23 C -0.184 4.184 24 C -0.171 4.171 25 C -0.110 4.110 26 C -0.136 4.136 27 H 0.177 0.823 28 C 0.323 3.677 29 O -0.377 6.377 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.143 0.857 44 H 0.153 0.847 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.423 -17.787 -12.124 23.498 hybrid contribution -0.808 0.860 1.211 1.691 sum 8.615 -16.927 -10.913 21.905 Atomic orbital electron populations 1.24099 0.95327 1.03159 0.97290 1.23254 0.96912 0.97729 1.02779 1.20940 0.92840 0.97039 0.88593 1.47946 1.11444 1.59382 1.13272 1.19285 0.95475 0.92124 0.82251 1.21503 1.40783 0.93351 1.01912 0.95535 1.25829 0.95854 0.95348 1.01431 1.70054 1.49193 1.08497 1.30554 0.85738 0.79087 0.79438 0.78840 1.20326 1.19565 1.16197 1.21357 0.82110 0.78268 0.91039 1.90634 1.53576 1.58081 1.43581 1.21721 0.83071 1.03939 0.95374 1.47141 1.07851 1.14020 1.62740 1.22303 0.93262 0.80252 0.72170 1.90720 1.61205 1.36521 1.48887 1.22825 0.89167 1.02150 0.95803 0.80211 1.20172 0.97613 1.01021 0.94365 1.21510 0.96569 1.00018 1.00348 1.22030 1.00872 0.98840 0.95320 1.19483 0.94349 1.02574 0.94587 1.21193 0.93237 0.94391 1.04812 0.82276 1.21561 0.87019 0.86739 0.72398 1.90769 1.86067 1.14186 1.46686 0.86259 0.87989 0.86731 0.89835 0.87958 0.93182 0.96644 0.92169 0.85067 0.83663 0.93490 0.88233 0.87247 0.85677 0.84697 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.19 -4.68 9.74 25.65 0.25 -4.43 16 3 C 0.13 3.94 5.65 85.63 0.48 4.43 16 4 N -0.59 -24.95 2.44 -830.49 -2.03 -26.97 16 5 C 0.23 11.67 4.23 85.63 0.36 12.04 16 6 C -0.54 -32.65 9.94 25.60 0.25 -32.40 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 8 C 0.01 0.83 5.47 84.65 0.46 1.29 16 9 N -0.94 -61.04 13.96 21.45 0.30 -60.74 16 10 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 14 C 0.49 20.74 7.74 87.66 0.68 21.42 16 15 O -0.58 -30.05 15.22 -3.04 -0.05 -30.10 16 16 C 0.08 2.58 4.71 85.63 0.40 2.98 16 17 N -0.57 -16.90 2.03 -755.86 -1.53 -18.43 16 18 C 0.53 13.95 6.72 88.68 0.60 14.55 16 19 O -0.50 -15.39 17.58 -2.88 -0.05 -15.44 16 20 C -0.08 -1.41 4.07 -10.25 -0.04 -1.46 16 21 H 0.18 1.61 8.14 -2.39 -0.02 1.59 16 22 C -0.09 -2.26 5.18 29.33 0.15 -2.11 16 23 C -0.17 -3.68 9.75 27.20 0.27 -3.42 16 24 C -0.15 -2.87 9.88 27.40 0.27 -2.60 16 25 C -0.07 -1.08 5.67 28.33 0.16 -0.92 16 26 C -0.12 -1.99 2.39 -12.62 -0.03 -2.02 16 27 H 0.16 1.36 8.11 -2.39 -0.02 1.35 16 28 C 0.53 15.52 7.43 87.44 0.65 16.17 16 29 O -0.51 -19.18 17.39 -2.85 -0.05 -19.23 16 30 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.10 2.16 7.84 -2.91 -0.02 2.14 16 32 H 0.11 2.69 7.83 -2.91 -0.02 2.66 16 33 H 0.08 2.73 7.72 -2.38 -0.02 2.72 16 34 H 0.10 2.56 6.44 -2.39 -0.02 2.54 16 35 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 36 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 37 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.13 3.60 7.28 -2.39 -0.02 3.58 16 39 H 0.15 3.58 7.46 -2.39 -0.02 3.56 16 40 H 0.05 1.64 6.62 -2.38 -0.02 1.62 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.45 7.79 -2.38 -0.02 1.43 16 Total: -1.00 -89.25 375.77 5.31 -83.94 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.94 Total: 18.39 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.89 Total: 21.04 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.26 Total: -106.14 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -0.15 Total: -64.76 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -89.25 5.31 -83.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.969 kcal (2) G-P(sol) polarization free energy of solvation -89.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds