Wall clock time and date at job start Tue Mar 31 2020 17:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00012 * 2 1 4 4 N 1.46493 * 109.47443 * 124.99495 * 3 2 1 5 5 C 1.46505 * 119.99899 * 90.00099 * 4 3 2 6 6 C 1.50703 * 109.47064 * 270.00279 * 5 4 3 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48495 * 109.46891 * 210.00496 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 C 1.34773 * 120.00646 * 270.00265 * 4 3 2 15 15 O 1.21282 * 120.00692 * 179.97438 * 14 4 3 16 16 C 1.50705 * 119.99759 * 0.02562 * 14 4 3 17 17 N 1.46497 * 109.47272 * 180.02562 * 16 14 4 18 18 C 1.35842 * 123.24607 * 269.70253 * 17 16 14 19 19 O 1.21219 * 126.88729 * 12.40029 * 18 17 16 20 20 C 1.49761 * 106.29499 * 192.31512 * 18 17 16 21 21 H 1.09004 * 110.77474 * 86.73198 * 20 18 17 22 22 C 1.50678 * 119.04307 * 214.83328 * 20 18 17 23 23 C 1.51431 * 107.49462 * 165.44053 * 22 20 18 24 24 C 1.29879 * 124.36605 * 342.35091 * 23 22 20 25 25 C 1.51429 * 124.35515 * 358.79095 * 24 23 22 26 26 C 1.51416 * 106.89776 * 341.78274 * 25 24 23 27 27 H 1.09001 * 110.31635 * 294.24366 * 26 25 24 28 28 C 1.35839 * 123.25630 * 89.99967 * 17 16 14 29 29 O 1.21227 * 126.88104 * 12.40680 * 28 17 16 30 30 H 1.08000 * 119.99810 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00302 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.46922 * 4.99680 * 3 2 1 34 34 H 1.08996 * 109.47481 * 244.99971 * 3 2 1 35 35 H 1.09002 * 109.47068 * 30.00248 * 5 4 3 36 36 H 1.09001 * 109.47372 * 150.00336 * 5 4 3 37 37 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.46606 * 299.99889 * 16 14 4 39 39 H 1.08999 * 109.47462 * 59.99201 * 16 14 4 40 40 H 1.08994 * 109.22204 * 46.16185 * 22 20 18 41 41 H 1.09007 * 110.20764 * 285.27651 * 22 20 18 42 42 H 1.07999 * 117.81611 * 162.31861 * 23 22 20 43 43 H 1.07999 * 117.81949 * 178.77856 * 24 23 22 44 44 H 1.09001 * 109.97386 * 222.42886 * 25 24 23 45 45 H 1.09006 * 109.96712 * 101.12304 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3589 0.8258 0.9695 6 6 4.3925 -0.6438 1.3019 7 1 3.4875 -1.1498 1.6040 8 6 5.5788 -1.3418 1.2214 9 7 5.6080 -2.6243 1.5111 10 14 7.1442 -0.4663 0.6996 11 1 7.8319 0.0752 1.8992 12 1 8.0404 -1.4259 0.0061 13 1 6.8046 0.6481 -0.2214 14 6 2.5936 1.8223 2.3213 15 8 3.3635 1.8442 3.2582 16 6 1.1890 2.3425 2.4881 17 7 1.0038 2.8167 3.8618 18 6 0.5572 2.0231 4.8698 19 8 0.4533 0.8155 4.8535 20 6 0.2205 2.9376 6.0069 21 1 -0.8009 3.3072 5.9164 22 6 0.4598 2.4682 7.4186 23 6 0.3851 3.6821 8.3208 24 6 0.4823 4.9096 7.9077 25 6 0.7108 5.3104 6.4654 26 6 1.2423 4.0875 5.7478 27 1 2.2252 3.8188 6.1351 28 6 1.2564 4.0939 4.2494 29 8 1.4537 5.0477 3.5277 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 4.6809 0.9725 -0.0615 36 1 5.0283 1.3652 1.6395 37 1 6.4426 -3.1153 1.4548 38 1 1.0219 3.1663 1.7941 39 1 0.4782 1.5427 2.2804 40 1 1.4496 2.0164 7.4837 41 1 -0.3001 1.7422 7.7079 42 1 0.2410 3.5161 9.3782 43 1 0.3939 5.6969 8.6417 44 1 1.4407 6.1183 6.4147 45 1 -0.2291 5.6276 6.0138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359385504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:44 Heat of formation + Delta-G solvation = -41.507984 kcal Electronic energy + Delta-G solvation = -29365.645751 eV Core-core repulsion = 25350.129485 eV Total energy + Delta-G solvation = -4015.516266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.30323 -39.31940 -38.56687 -37.89603 -35.94766 -35.50908 -33.20353 -32.21621 -32.07013 -31.22654 -29.12188 -27.46066 -25.62364 -25.30143 -23.93385 -22.24864 -21.95385 -19.89287 -19.65992 -18.90607 -18.55261 -17.32169 -17.13701 -17.00378 -16.78567 -16.10271 -15.40034 -15.10166 -15.03262 -14.95277 -14.64828 -14.24031 -14.20541 -13.84090 -13.64323 -13.35137 -13.22467 -13.12397 -13.05232 -12.64020 -12.44907 -12.32523 -11.95139 -11.66675 -11.45230 -11.44169 -11.28794 -11.05558 -10.86074 -10.55689 -10.31676 -10.17726 -10.14896 -9.94807 -9.53299 -9.38236 -9.20401 -8.95650 -8.59487 -7.86673 -6.08872 -4.07825 1.51351 1.91774 2.26623 2.50792 2.56608 3.14040 3.28139 3.33946 3.36103 3.53355 3.80271 4.06243 4.07415 4.38608 4.59032 4.64306 4.80142 4.83346 4.88442 4.97390 4.99702 5.08266 5.19268 5.23636 5.24273 5.30988 5.39939 5.45726 5.51296 5.54687 5.64852 5.65813 5.79161 5.83507 6.22053 6.25795 6.54565 6.60352 6.68071 6.86593 6.96729 7.00751 7.21329 7.24565 7.58391 7.72051 8.08284 8.44586 8.77335 8.95663 9.50660 11.04221 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003630 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.173278 B = 7712.191387 C = 8259.838474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.136 3.864 4 N -0.585 5.585 5 C 0.216 3.784 6 C -0.527 4.527 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.500 3.500 15 O -0.529 6.529 16 C 0.080 3.920 17 N -0.572 5.572 18 C 0.544 3.456 19 O -0.454 6.454 20 C -0.128 4.128 21 H 0.124 0.876 22 C -0.072 4.072 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.067 4.067 26 C -0.131 4.131 27 H 0.129 0.871 28 C 0.551 3.449 29 O -0.474 6.474 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 15.398 7.246 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.168 4.168 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.096 3.904 6 C -0.566 4.566 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.284 3.716 15 O -0.406 6.406 16 C -0.045 4.045 17 N -0.317 5.317 18 C 0.332 3.668 19 O -0.322 6.322 20 C -0.149 4.149 21 H 0.142 0.858 22 C -0.109 4.109 23 C -0.167 4.167 24 C -0.175 4.175 25 C -0.104 4.104 26 C -0.152 4.152 27 H 0.147 0.853 28 C 0.341 3.659 29 O -0.344 6.344 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.333 15.090 7.317 22.061 hybrid contribution 0.956 0.009 -0.429 1.048 sum -13.377 15.099 6.888 21.316 Atomic orbital electron populations 1.23746 0.95736 1.01395 1.03592 1.23648 0.95919 1.00383 0.96869 1.20678 0.92282 0.94871 0.90938 1.47891 1.14438 1.60112 1.09255 1.19740 0.77969 0.95832 0.96879 1.21322 0.97065 0.91811 1.46387 0.90458 1.24850 0.98598 0.94736 0.94747 1.69895 1.27109 1.07692 1.48698 0.86882 0.83871 0.79748 0.79357 1.19989 1.21042 1.19085 1.20387 0.88800 0.78976 0.83395 1.90680 1.54843 1.56264 1.38768 1.21726 0.97847 1.02342 0.82634 1.47382 1.61208 1.12237 1.10886 1.20482 0.75038 0.87310 0.83967 1.90810 1.48803 1.12071 1.80507 1.21952 1.01611 0.95660 0.95720 0.85846 1.20135 1.04112 0.96764 0.89895 1.22424 1.00901 0.93612 0.99800 1.22405 1.01503 0.96979 0.96622 1.20246 1.01979 0.95863 0.92298 1.22214 1.02161 0.98380 0.92432 0.85284 1.20507 0.73231 0.81125 0.91063 1.90735 1.44790 1.36454 1.62437 0.88496 0.89182 0.85462 0.91171 0.89190 0.94967 0.94544 0.92567 0.86606 0.86452 0.89359 0.89114 0.86936 0.87026 0.89207 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.70 13.86 29.01 0.40 -2.30 16 2 C -0.15 -2.39 9.74 -36.03 -0.35 -2.74 16 3 C 0.14 2.10 5.69 -5.20 -0.03 2.07 16 4 N -0.59 -12.04 2.44 -176.43 -0.43 -12.47 16 5 C 0.22 5.27 4.27 -5.19 -0.02 5.25 16 6 C -0.53 -15.07 9.83 -34.44 -0.34 -15.41 16 7 H 0.08 2.43 7.70 -52.49 -0.40 2.03 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 10 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.50 10.44 7.74 -10.98 -0.09 10.36 16 15 O -0.53 -13.26 16.01 5.56 0.09 -13.17 16 16 C 0.08 1.24 4.76 -5.19 -0.02 1.22 16 17 N -0.57 -8.61 2.15 -116.74 -0.25 -8.86 16 18 C 0.54 8.02 7.70 -10.95 -0.08 7.93 16 19 O -0.45 -8.40 17.81 5.61 0.10 -8.30 16 20 C -0.13 -1.29 2.51 -91.78 -0.23 -1.52 16 21 H 0.12 0.95 8.00 -51.93 -0.42 0.54 16 22 C -0.07 -0.63 5.83 -28.69 -0.17 -0.79 16 23 C -0.15 -1.05 9.78 -35.35 -0.35 -1.40 16 24 C -0.16 -1.05 9.78 -35.35 -0.35 -1.40 16 25 C -0.07 -0.51 5.87 -28.33 -0.17 -0.67 16 26 C -0.13 -1.38 2.52 -91.38 -0.23 -1.61 16 27 H 0.13 1.45 8.01 -51.93 -0.42 1.03 16 28 C 0.55 7.66 7.70 -10.91 -0.08 7.58 16 29 O -0.47 -7.54 17.65 5.60 0.10 -7.44 16 30 H 0.10 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.09 0.96 7.84 -52.49 -0.41 0.54 16 32 H 0.13 2.46 7.59 -52.49 -0.40 2.06 16 33 H 0.07 0.84 6.09 -51.93 -0.32 0.53 16 34 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 35 H 0.03 0.74 6.95 -51.93 -0.36 0.38 16 36 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.12 1.49 7.14 -51.93 -0.37 1.12 16 39 H 0.12 1.72 7.45 -51.93 -0.39 1.33 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.11 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -36.85 377.85 -7.17 -44.02 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.37 Total: 1.87 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.20 Total: 8.61 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.09 Total: -48.25 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: 0.29 Total: -28.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.85 -7.17 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.512 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds