Wall clock time and date at job start Tue Mar 31 2020 17:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00012 * 2 1 4 4 N 1.46493 * 109.47443 * 124.99495 * 3 2 1 5 5 C 1.46505 * 119.99899 * 90.00099 * 4 3 2 6 6 C 1.50703 * 109.47064 * 270.00279 * 5 4 3 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48495 * 109.46891 * 210.00496 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 C 1.34773 * 120.00646 * 270.00265 * 4 3 2 15 15 O 1.21282 * 120.00692 * 179.97438 * 14 4 3 16 16 C 1.50705 * 119.99759 * 0.02562 * 14 4 3 17 17 N 1.46497 * 109.47272 * 180.02562 * 16 14 4 18 18 C 1.35842 * 123.24607 * 269.70253 * 17 16 14 19 19 O 1.21219 * 126.88729 * 12.40029 * 18 17 16 20 20 C 1.49761 * 106.29499 * 192.31512 * 18 17 16 21 21 H 1.09004 * 110.77474 * 86.73198 * 20 18 17 22 22 C 1.50678 * 119.04307 * 214.83328 * 20 18 17 23 23 C 1.51431 * 107.49462 * 165.44053 * 22 20 18 24 24 C 1.29879 * 124.36605 * 342.35091 * 23 22 20 25 25 C 1.51429 * 124.35515 * 358.79095 * 24 23 22 26 26 C 1.51416 * 106.89776 * 341.78274 * 25 24 23 27 27 H 1.09001 * 110.31635 * 294.24366 * 26 25 24 28 28 C 1.35839 * 123.25630 * 89.99967 * 17 16 14 29 29 O 1.21227 * 126.88104 * 12.40680 * 28 17 16 30 30 H 1.08000 * 119.99810 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00302 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.46922 * 4.99680 * 3 2 1 34 34 H 1.08996 * 109.47481 * 244.99971 * 3 2 1 35 35 H 1.09002 * 109.47068 * 30.00248 * 5 4 3 36 36 H 1.09001 * 109.47372 * 150.00336 * 5 4 3 37 37 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.46606 * 299.99889 * 16 14 4 39 39 H 1.08999 * 109.47462 * 59.99201 * 16 14 4 40 40 H 1.08994 * 109.22204 * 46.16185 * 22 20 18 41 41 H 1.09007 * 110.20764 * 285.27651 * 22 20 18 42 42 H 1.07999 * 117.81611 * 162.31861 * 23 22 20 43 43 H 1.07999 * 117.81949 * 178.77856 * 24 23 22 44 44 H 1.09001 * 109.97386 * 222.42886 * 25 24 23 45 45 H 1.09006 * 109.96712 * 101.12304 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3589 0.8258 0.9695 6 6 4.3925 -0.6438 1.3019 7 1 3.4875 -1.1498 1.6040 8 6 5.5788 -1.3418 1.2214 9 7 5.6080 -2.6243 1.5111 10 14 7.1442 -0.4663 0.6996 11 1 7.8319 0.0752 1.8992 12 1 8.0404 -1.4259 0.0061 13 1 6.8046 0.6481 -0.2214 14 6 2.5936 1.8223 2.3213 15 8 3.3635 1.8442 3.2582 16 6 1.1890 2.3425 2.4881 17 7 1.0038 2.8167 3.8618 18 6 0.5572 2.0231 4.8698 19 8 0.4533 0.8155 4.8535 20 6 0.2205 2.9376 6.0069 21 1 -0.8009 3.3072 5.9164 22 6 0.4598 2.4682 7.4186 23 6 0.3851 3.6821 8.3208 24 6 0.4823 4.9096 7.9077 25 6 0.7108 5.3104 6.4654 26 6 1.2423 4.0875 5.7478 27 1 2.2252 3.8188 6.1351 28 6 1.2564 4.0939 4.2494 29 8 1.4537 5.0477 3.5277 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4026 -0.9313 35 1 4.6809 0.9725 -0.0615 36 1 5.0283 1.3652 1.6395 37 1 6.4426 -3.1153 1.4548 38 1 1.0219 3.1663 1.7941 39 1 0.4782 1.5427 2.2804 40 1 1.4496 2.0164 7.4837 41 1 -0.3001 1.7422 7.7079 42 1 0.2410 3.5161 9.3782 43 1 0.3939 5.6969 8.6417 44 1 1.4407 6.1183 6.4147 45 1 -0.2291 5.6276 6.0138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359385504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:43 Heat of formation + Delta-G solvation = -66.455930 kcal Electronic energy + Delta-G solvation = -29366.727575 eV Core-core repulsion = 25350.129485 eV Total energy + Delta-G solvation = -4016.598090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.36394 -40.85977 -39.77174 -38.79278 -37.45228 -36.77403 -35.09423 -33.85745 -33.12308 -31.92440 -30.74179 -28.88785 -26.99170 -26.29496 -25.11285 -23.88807 -22.90535 -21.25772 -20.81042 -20.05679 -19.55220 -19.05649 -18.47130 -18.29227 -18.22748 -17.24718 -16.71739 -16.49555 -16.45818 -16.08203 -15.86699 -15.63725 -15.42416 -15.06960 -14.78161 -14.51021 -14.45855 -14.31645 -14.09976 -13.95372 -13.88024 -13.65240 -13.38737 -13.19542 -12.68187 -12.48923 -12.41172 -12.37523 -12.14487 -12.10379 -11.97237 -11.73540 -11.60824 -11.20143 -11.00936 -10.85802 -10.58187 -10.32828 -9.91128 -9.59803 -8.35947 -6.40850 0.38564 1.06834 1.28140 1.31059 1.32794 1.41137 1.41207 1.49723 1.56549 2.27576 2.30461 2.67150 2.97671 3.15004 3.19781 3.47011 3.79064 3.82950 3.95783 3.97359 4.05941 4.11670 4.11958 4.14356 4.23603 4.37626 4.38932 4.48894 4.68556 4.71009 4.81127 4.84612 4.88418 4.90332 5.07207 5.09459 5.17184 5.40139 5.48394 5.54288 5.70927 5.72347 5.83754 6.01416 6.13813 6.19401 6.46623 6.60824 6.61244 7.10448 7.25213 8.81041 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003630 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.173278 B = 7712.191387 C = 8259.838474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.187 4.187 3 C 0.133 3.867 4 N -0.591 5.591 5 C 0.224 3.776 6 C -0.530 4.530 7 H 0.029 0.971 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.947 3.053 11 H -0.279 1.279 12 H -0.274 1.274 13 H -0.236 1.236 14 C 0.486 3.514 15 O -0.585 6.585 16 C 0.086 3.914 17 N -0.580 5.580 18 C 0.538 3.462 19 O -0.503 6.503 20 C -0.116 4.116 21 H 0.157 0.843 22 C -0.073 4.073 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.063 4.063 26 C -0.124 4.124 27 H 0.119 0.881 28 C 0.550 3.450 29 O -0.493 6.493 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 18.898 7.117 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.206 4.206 3 C 0.012 3.988 4 N -0.321 5.321 5 C 0.102 3.898 6 C -0.569 4.569 7 H 0.047 0.953 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.159 1.159 14 C 0.274 3.726 15 O -0.465 6.465 16 C -0.038 4.038 17 N -0.324 5.324 18 C 0.329 3.671 19 O -0.374 6.374 20 C -0.137 4.137 21 H 0.175 0.825 22 C -0.111 4.111 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.100 4.100 26 C -0.145 4.145 27 H 0.136 0.864 28 C 0.341 3.659 29 O -0.365 6.365 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.100 18.623 7.155 25.636 hybrid contribution 1.377 -1.169 -0.397 1.849 sum -14.723 17.454 6.758 23.814 Atomic orbital electron populations 1.24045 0.94494 1.03438 0.98715 1.23330 0.96991 0.98847 1.01450 1.21020 0.92306 0.95979 0.89519 1.47994 1.13932 1.59215 1.10953 1.19414 0.80528 0.92639 0.97255 1.21512 0.95442 0.94090 1.45812 0.95315 1.25852 1.02676 0.95449 0.94794 1.70058 1.28347 1.09685 1.50499 0.85736 0.78662 0.79361 0.79303 1.20435 1.19937 1.15913 1.21399 0.90538 0.78133 0.82569 1.90639 1.56838 1.58529 1.40489 1.21746 0.94037 1.03784 0.84282 1.47635 1.61142 1.12857 1.10807 1.21347 0.73681 0.87108 0.85003 1.90782 1.50952 1.14254 1.81435 1.22039 1.03075 0.93888 0.94660 0.82524 1.20171 1.03295 0.98078 0.89520 1.22419 1.01753 0.92809 1.00233 1.22530 1.00487 0.97383 0.96338 1.20334 1.02761 0.94375 0.92562 1.22256 1.01969 1.00236 0.90088 0.86373 1.21034 0.72175 0.80287 0.92376 1.90717 1.45582 1.36884 1.63284 0.88217 0.85153 0.90470 0.86534 0.88022 0.92671 0.96448 0.92334 0.83068 0.85311 0.91488 0.88267 0.85192 0.84732 0.88616 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 13.86 67.78 0.94 -3.14 16 2 C -0.19 -6.01 9.74 25.64 0.25 -5.76 16 3 C 0.13 3.94 5.69 85.63 0.49 4.43 16 4 N -0.59 -24.50 2.44 -830.50 -2.03 -26.53 16 5 C 0.22 11.13 4.27 85.63 0.37 11.49 16 6 C -0.53 -31.91 9.83 25.60 0.25 -31.66 16 7 H 0.03 1.95 7.70 -2.91 -0.02 1.93 16 8 C 0.01 0.61 5.47 84.65 0.46 1.07 16 9 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 10 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 14 C 0.49 20.62 7.74 87.66 0.68 21.30 16 15 O -0.58 -30.54 16.01 -3.04 -0.05 -30.59 16 16 C 0.09 2.60 4.76 85.64 0.41 3.00 16 17 N -0.58 -17.03 2.15 -758.86 -1.63 -18.66 16 18 C 0.54 15.86 7.70 87.20 0.67 16.53 16 19 O -0.50 -19.29 17.81 -2.84 -0.05 -19.34 16 20 C -0.12 -2.16 2.51 -11.55 -0.03 -2.19 16 21 H 0.16 1.91 8.00 -2.38 -0.02 1.89 16 22 C -0.07 -1.20 5.83 29.33 0.17 -1.03 16 23 C -0.15 -1.75 9.78 27.04 0.26 -1.49 16 24 C -0.15 -1.48 9.78 27.04 0.26 -1.21 16 25 C -0.06 -0.77 5.87 29.56 0.17 -0.59 16 26 C -0.12 -2.44 2.52 -11.28 -0.03 -2.47 16 27 H 0.12 2.62 8.01 -2.39 -0.02 2.61 16 28 C 0.55 14.56 7.70 87.22 0.67 15.23 16 29 O -0.49 -14.82 17.65 -2.87 -0.05 -14.87 16 30 H 0.10 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.13 2.13 7.84 -2.91 -0.02 2.11 16 32 H 0.08 3.26 7.59 -2.91 -0.02 3.23 16 33 H 0.12 2.34 6.09 -2.38 -0.01 2.33 16 34 H 0.10 2.73 7.89 -2.39 -0.02 2.71 16 35 H 0.06 2.48 6.95 -2.39 -0.02 2.47 16 36 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 37 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 38 H 0.15 3.40 7.14 -2.38 -0.02 3.39 16 39 H 0.13 3.57 7.45 -2.39 -0.02 3.55 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 42 H 0.13 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -88.16 377.85 5.32 -82.85 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.94 Total: 17.30 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 6.00 Total: 23.51 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.36 Total: -106.18 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -0.15 Total: -64.79 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -88.16 5.32 -82.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.390 kcal (2) G-P(sol) polarization free energy of solvation -88.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds