Wall clock time and date at job start Tue Mar 31 2020 16:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47633 * 2 1 4 4 C 1.53005 * 109.47065 * 239.99478 * 2 1 3 5 5 C 1.50703 * 109.46799 * 120.00385 * 2 1 3 6 6 O 1.21294 * 119.99968 * 3.60919 * 5 2 1 7 7 N 1.34779 * 120.00172 * 183.61432 * 5 2 1 8 8 C 1.47296 * 121.15122 * 4.39566 * 7 5 2 9 9 C 1.53534 * 107.58803 * 222.00876 * 8 7 5 10 10 O 1.42945 * 108.80876 * 301.74291 * 9 8 7 11 11 C 1.35906 * 117.84967 * 49.31058 * 10 9 8 12 12 C 1.38894 * 119.59633 * 159.52294 * 11 10 9 13 13 C 1.37973 * 120.16047 * 179.97438 * 12 11 10 14 14 C 1.39219 * 120.20599 * 0.29390 * 13 12 11 15 15 N 1.39432 * 120.04936 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99869 * 144.78327 * 15 14 13 17 17 O 1.21798 * 119.99912 * 4.38986 * 16 15 14 18 18 C 1.41691 * 120.00303 * 184.39357 * 16 15 14 19 19 H 1.08000 * 119.99574 * 359.97438 * 18 16 15 20 20 C 1.40134 * 120.00130 * 179.97438 * 18 16 15 21 21 N 1.30632 * 120.00346 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99942 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47289 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47145 * 120.00657 * 22 20 18 25 25 H 1.48504 * 109.47271 * 240.00185 * 22 20 18 26 26 C 1.39070 * 119.89111 * 0.06257 * 14 13 12 27 27 C 1.38377 * 119.82062 * 359.96760 * 26 14 13 28 28 H 1.08998 * 109.46655 * 300.00426 * 1 2 3 29 29 H 1.09007 * 109.46629 * 59.99537 * 1 2 3 30 30 H 1.09000 * 109.47745 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47099 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46852 * 299.99982 * 3 2 1 33 33 H 1.08998 * 109.47448 * 60.00059 * 3 2 1 34 34 H 1.09005 * 109.47055 * 295.36840 * 4 2 1 35 35 H 1.09007 * 109.46853 * 55.36104 * 4 2 1 36 36 H 1.08998 * 109.47391 * 175.36510 * 4 2 1 37 37 H 1.09003 * 109.83591 * 341.52652 * 8 7 5 38 38 H 1.09000 * 109.83542 * 102.48574 * 8 7 5 39 39 H 1.08998 * 109.58131 * 61.54671 * 9 8 7 40 40 H 1.09003 * 109.57636 * 181.94415 * 9 8 7 41 41 H 1.08002 * 119.91723 * 0.22397 * 12 11 10 42 42 H 1.08001 * 119.89586 * 180.27385 * 13 12 11 43 43 H 0.97001 * 120.00291 * 324.77426 * 15 14 13 44 44 H 0.96994 * 120.00407 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.08610 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2460 -1.2284 1.9951 7 7 3.3552 -0.7704 1.4813 8 6 4.3259 -0.0698 0.6232 9 6 5.5174 -1.0131 0.4045 10 8 6.0719 -1.3576 1.6762 11 6 5.2202 -1.7842 2.6456 12 6 5.7126 -2.5190 3.7165 13 6 4.8585 -2.9574 4.7074 14 6 3.4978 -2.6713 4.6365 15 7 2.6377 -3.1155 5.6400 16 6 1.5881 -2.3567 6.0126 17 8 1.3441 -1.3214 5.4192 18 6 0.7685 -2.7632 7.0945 19 1 0.9847 -3.6814 7.6203 20 6 -0.3226 -1.9739 7.4822 21 7 -0.5844 -0.8635 6.8458 22 14 -1.4035 -2.5102 8.9081 23 1 -0.8987 -3.7947 9.4561 24 1 -1.3723 -1.4729 9.9704 25 1 -2.7987 -2.6890 8.4318 26 6 2.9979 -1.9424 3.5628 27 6 3.8560 -1.5040 2.5696 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6769 1.9563 0.8900 34 1 1.7460 -1.7702 -1.2086 35 1 1.6103 -0.2578 -2.1373 36 1 3.1268 -0.6501 -1.2918 37 1 3.8655 0.1726 -0.3346 38 1 4.6623 0.8433 1.1144 39 1 5.1798 -1.9162 -0.1038 40 1 6.2735 -0.5123 -0.2002 41 1 6.7672 -2.7442 3.7757 42 1 5.2466 -3.5247 5.5405 43 1 2.7947 -3.9708 6.0699 44 1 -1.3398 -0.3173 7.1139 45 1 1.9429 -1.7190 3.5044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368934822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:06 Heat of formation + Delta-G solvation = -47.910068 kcal Electronic energy + Delta-G solvation = -29880.354088 eV Core-core repulsion = 25864.560207 eV Total energy + Delta-G solvation = -4015.793881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32010 -39.25455 -38.37333 -36.48098 -35.75882 -35.14398 -33.16095 -32.23806 -30.37320 -29.36984 -27.88970 -27.60545 -27.34866 -26.23110 -23.84665 -23.65912 -22.28288 -20.78230 -19.44962 -18.97573 -17.77920 -17.45669 -16.88203 -16.43642 -15.88336 -15.48057 -15.36543 -15.34197 -14.93216 -14.42950 -14.07787 -14.02357 -13.77538 -13.50800 -13.08500 -12.94847 -12.69531 -12.47229 -12.37965 -12.36312 -12.17162 -12.05069 -11.83160 -11.61992 -11.39694 -11.25020 -11.14735 -11.08551 -11.05556 -10.77448 -10.53941 -10.40739 -10.23432 -9.90751 -9.05307 -8.92036 -8.48002 -7.67892 -7.43759 -6.72377 -6.25554 -4.78570 1.81362 2.08982 2.80798 2.89689 3.10086 3.18131 3.22911 3.50930 4.05672 4.19786 4.33667 4.46121 4.55861 4.61642 4.73332 4.79154 4.83696 4.88459 5.01545 5.20249 5.29220 5.32285 5.42117 5.48286 5.55273 5.66330 5.71122 5.80237 5.80582 5.83405 5.89825 5.91159 6.09837 6.13462 6.28973 6.35002 6.55405 6.68437 6.92877 7.19223 7.32938 7.45424 7.58042 7.83650 7.99279 8.16176 8.34987 8.42936 8.91046 9.43271 10.50402 10.73304 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004258 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.626968 B = 6574.398276 C = 8384.145077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.163 4.163 4 C -0.149 4.149 5 C 0.514 3.486 6 O -0.481 6.481 7 N -0.552 5.552 8 C 0.046 3.954 9 C 0.049 3.951 10 O -0.316 6.316 11 C 0.038 3.962 12 C -0.106 4.106 13 C -0.166 4.166 14 C 0.185 3.815 15 N -0.699 5.699 16 C 0.543 3.457 17 O -0.557 6.557 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.088 3.912 21 N -0.747 5.747 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.135 4.135 27 C 0.096 3.904 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.391 0.609 44 H 0.270 0.730 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 1.488 -16.247 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.220 4.220 4 C -0.206 4.206 5 C 0.303 3.697 6 O -0.353 6.353 7 N -0.277 5.277 8 C -0.077 4.077 9 C -0.028 4.028 10 O -0.231 6.231 11 C -0.009 4.009 12 C -0.126 4.126 13 C -0.189 4.189 14 C 0.085 3.915 15 N -0.343 5.343 16 C 0.351 3.649 17 O -0.440 6.440 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.374 5.374 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.157 4.157 27 C 0.002 3.998 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.257 2.184 -16.230 18.340 hybrid contribution -0.428 -0.565 0.903 1.149 sum 7.828 1.619 -15.327 17.286 Atomic orbital electron populations 1.21673 0.91357 1.03248 1.02295 1.20778 0.98513 0.96226 0.93051 1.22341 1.02237 0.93994 1.03400 1.22099 1.01192 1.01135 0.96168 1.20774 0.80827 0.80766 0.87355 1.90683 1.54281 1.44100 1.46252 1.45503 1.06387 1.48777 1.27079 1.23313 0.90751 0.96330 0.97258 1.23178 0.96158 0.98524 0.84905 1.85951 1.34633 1.82190 1.20349 1.18414 0.87092 1.02888 0.92521 1.19936 0.99552 0.99164 0.93911 1.20734 0.91635 1.06317 1.00184 1.17876 0.89047 0.95890 0.88685 1.44087 1.29651 1.23157 1.37429 1.17079 0.79160 0.83593 0.85087 1.90676 1.70826 1.25388 1.57062 1.20037 1.12173 1.09136 1.16118 0.91254 1.25746 0.97095 0.93891 0.96703 1.70040 1.23339 1.09738 1.34319 0.86267 0.79773 0.79538 0.80927 1.18598 1.20033 1.19997 1.22531 1.04689 0.99227 0.89297 1.17909 0.91904 0.99709 0.90281 0.91418 0.92014 0.91651 0.90871 0.91199 0.91521 0.91756 0.91019 0.91634 0.85962 0.89682 0.91783 0.86768 0.85617 0.85886 0.77579 0.91878 0.78419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 7.77 37.16 0.29 -1.36 16 2 C -0.08 -1.02 0.75 -155.66 -0.12 -1.13 16 3 C -0.16 -1.63 8.08 37.15 0.30 -1.33 16 4 C -0.15 -1.35 8.23 37.16 0.31 -1.04 16 5 C 0.51 9.20 6.44 -10.98 -0.07 9.13 16 6 O -0.48 -11.29 12.68 5.55 0.07 -11.22 16 7 N -0.55 -9.32 3.01 -112.34 -0.34 -9.65 16 8 C 0.05 0.52 4.35 -3.33 -0.01 0.50 16 9 C 0.05 0.52 7.18 37.43 0.27 0.79 16 10 O -0.32 -4.78 10.32 -19.44 -0.20 -4.98 16 11 C 0.04 0.68 6.53 -38.88 -0.25 0.43 16 12 C -0.11 -1.83 9.96 -39.44 -0.39 -2.22 16 13 C -0.17 -3.11 9.96 -39.31 -0.39 -3.51 16 14 C 0.18 4.25 6.30 -83.73 -0.53 3.72 16 15 N -0.70 -16.92 5.31 -12.42 -0.07 -16.99 16 16 C 0.54 15.93 7.41 -14.94 -0.11 15.82 16 17 O -0.56 -18.42 12.32 5.10 0.06 -18.36 16 18 C -0.54 -15.35 9.31 -37.55 -0.35 -15.70 16 19 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 20 C 0.09 2.47 5.50 -17.35 -0.10 2.37 16 21 N -0.75 -22.50 11.73 55.55 0.65 -21.85 16 22 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.14 -3.29 7.66 -39.22 -0.30 -3.59 16 27 C 0.10 1.95 6.34 -83.38 -0.53 1.42 16 28 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.07 0.62 4.18 -51.93 -0.22 0.40 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 5.17 -51.93 -0.27 0.22 16 37 H 0.12 0.99 2.67 -51.93 -0.14 0.85 16 38 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.39 8.05 8.78 -40.82 -0.36 7.69 16 44 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 45 H 0.20 5.64 3.08 -53.66 -0.17 5.47 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -38.28 355.21 -7.23 -45.51 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.75 Total: 12.79 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.99 Total: 4.30 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.25 Total: -48.49 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.07 Total: -34.55 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.28 -7.23 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368934822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.400 kcal (2) G-P(sol) polarization free energy of solvation -38.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds