Wall clock time and date at job start Tue Mar 31 2020 16:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47633 * 2 1 4 4 C 1.53005 * 109.47065 * 239.99478 * 2 1 3 5 5 C 1.50703 * 109.46799 * 120.00385 * 2 1 3 6 6 O 1.21294 * 119.99968 * 3.60919 * 5 2 1 7 7 N 1.34779 * 120.00172 * 183.61432 * 5 2 1 8 8 C 1.47296 * 121.15122 * 4.39566 * 7 5 2 9 9 C 1.53534 * 107.58803 * 222.00876 * 8 7 5 10 10 O 1.42945 * 108.80876 * 301.74291 * 9 8 7 11 11 C 1.35906 * 117.84967 * 49.31058 * 10 9 8 12 12 C 1.38894 * 119.59633 * 159.52294 * 11 10 9 13 13 C 1.37973 * 120.16047 * 179.97438 * 12 11 10 14 14 C 1.39219 * 120.20599 * 0.29390 * 13 12 11 15 15 N 1.39432 * 120.04936 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99869 * 144.78327 * 15 14 13 17 17 O 1.21798 * 119.99912 * 4.38986 * 16 15 14 18 18 C 1.41691 * 120.00303 * 184.39357 * 16 15 14 19 19 H 1.08000 * 119.99574 * 359.97438 * 18 16 15 20 20 C 1.40134 * 120.00130 * 179.97438 * 18 16 15 21 21 N 1.30632 * 120.00346 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99942 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47289 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47145 * 120.00657 * 22 20 18 25 25 H 1.48504 * 109.47271 * 240.00185 * 22 20 18 26 26 C 1.39070 * 119.89111 * 0.06257 * 14 13 12 27 27 C 1.38377 * 119.82062 * 359.96760 * 26 14 13 28 28 H 1.08998 * 109.46655 * 300.00426 * 1 2 3 29 29 H 1.09007 * 109.46629 * 59.99537 * 1 2 3 30 30 H 1.09000 * 109.47745 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47099 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46852 * 299.99982 * 3 2 1 33 33 H 1.08998 * 109.47448 * 60.00059 * 3 2 1 34 34 H 1.09005 * 109.47055 * 295.36840 * 4 2 1 35 35 H 1.09007 * 109.46853 * 55.36104 * 4 2 1 36 36 H 1.08998 * 109.47391 * 175.36510 * 4 2 1 37 37 H 1.09003 * 109.83591 * 341.52652 * 8 7 5 38 38 H 1.09000 * 109.83542 * 102.48574 * 8 7 5 39 39 H 1.08998 * 109.58131 * 61.54671 * 9 8 7 40 40 H 1.09003 * 109.57636 * 181.94415 * 9 8 7 41 41 H 1.08002 * 119.91723 * 0.22397 * 12 11 10 42 42 H 1.08001 * 119.89586 * 180.27385 * 13 12 11 43 43 H 0.97001 * 120.00291 * 324.77426 * 15 14 13 44 44 H 0.96994 * 120.00407 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.08610 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2460 -1.2284 1.9951 7 7 3.3552 -0.7704 1.4813 8 6 4.3259 -0.0698 0.6232 9 6 5.5174 -1.0131 0.4045 10 8 6.0719 -1.3576 1.6762 11 6 5.2202 -1.7842 2.6456 12 6 5.7126 -2.5190 3.7165 13 6 4.8585 -2.9574 4.7074 14 6 3.4978 -2.6713 4.6365 15 7 2.6377 -3.1155 5.6400 16 6 1.5881 -2.3567 6.0126 17 8 1.3441 -1.3214 5.4192 18 6 0.7685 -2.7632 7.0945 19 1 0.9847 -3.6814 7.6203 20 6 -0.3226 -1.9739 7.4822 21 7 -0.5844 -0.8635 6.8458 22 14 -1.4035 -2.5102 8.9081 23 1 -0.8987 -3.7947 9.4561 24 1 -1.3723 -1.4729 9.9704 25 1 -2.7987 -2.6890 8.4318 26 6 2.9979 -1.9424 3.5628 27 6 3.8560 -1.5040 2.5696 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6769 1.9563 0.8900 34 1 1.7460 -1.7702 -1.2086 35 1 1.6103 -0.2578 -2.1373 36 1 3.1268 -0.6501 -1.2918 37 1 3.8655 0.1726 -0.3346 38 1 4.6623 0.8433 1.1144 39 1 5.1798 -1.9162 -0.1038 40 1 6.2735 -0.5123 -0.2002 41 1 6.7672 -2.7442 3.7757 42 1 5.2466 -3.5247 5.5405 43 1 2.7947 -3.9708 6.0699 44 1 -1.3398 -0.3173 7.1139 45 1 1.9429 -1.7190 3.5044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368934822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:05 Heat of formation + Delta-G solvation = -77.409671 kcal Electronic energy + Delta-G solvation = -29881.633287 eV Core-core repulsion = 25864.560207 eV Total energy + Delta-G solvation = -4017.073080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61565 -40.67324 -40.08217 -38.12011 -37.10135 -36.39699 -35.08272 -34.35411 -31.66612 -30.90752 -29.48364 -28.40002 -28.33902 -28.14545 -25.08542 -24.99875 -23.75982 -22.44387 -21.04458 -20.32685 -19.31695 -19.03782 -18.36764 -17.81104 -17.48515 -16.99914 -16.96061 -16.62096 -16.10037 -15.89616 -15.48297 -15.33531 -15.11687 -14.95870 -14.65789 -14.47147 -14.23105 -13.99890 -13.67530 -13.57459 -13.20297 -13.13791 -13.13207 -12.86638 -12.80925 -12.75086 -12.72002 -12.56975 -12.50483 -12.05481 -12.03819 -11.99609 -11.45136 -11.25663 -11.02077 -10.54275 -10.21456 -9.70336 -9.12721 -8.41337 -8.35999 -7.02352 0.28749 0.52404 1.35079 1.35818 1.53291 1.54983 1.60618 2.18915 2.34329 2.39210 2.85498 3.03387 3.19537 3.52999 3.65178 3.66491 3.80417 3.81977 3.95235 4.03844 4.14427 4.28158 4.40733 4.47874 4.54474 4.60189 4.64018 4.67946 4.71841 4.83413 4.84011 4.87438 4.94234 5.07500 5.14818 5.18341 5.21232 5.26035 5.31411 5.43300 5.63434 5.85543 5.90961 6.18017 6.21356 6.34366 6.57696 6.72248 7.04114 7.43959 8.40810 8.59136 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004258 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.626968 B = 6574.398276 C = 8384.145077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 C -0.159 4.159 4 C -0.143 4.143 5 C 0.498 3.502 6 O -0.554 6.554 7 N -0.554 5.554 8 C 0.037 3.963 9 C 0.042 3.958 10 O -0.315 6.315 11 C 0.054 3.946 12 C -0.100 4.100 13 C -0.151 4.151 14 C 0.142 3.858 15 N -0.694 5.694 16 C 0.525 3.475 17 O -0.608 6.608 18 C -0.567 4.567 19 H 0.092 0.908 20 C 0.028 3.972 21 N -0.806 5.806 22 Si 1.006 2.994 23 H -0.243 1.243 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.179 4.179 27 C 0.080 3.920 28 H 0.030 0.970 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.154 0.846 43 H 0.405 0.595 44 H 0.277 0.723 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 1.471 -18.262 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.080 4.080 3 C -0.216 4.216 4 C -0.199 4.199 5 C 0.290 3.710 6 O -0.431 6.431 7 N -0.279 5.279 8 C -0.083 4.083 9 C -0.033 4.033 10 O -0.230 6.230 11 C 0.006 3.994 12 C -0.119 4.119 13 C -0.173 4.173 14 C 0.044 3.956 15 N -0.339 5.339 16 C 0.334 3.666 17 O -0.494 6.494 18 C -0.602 4.602 19 H 0.110 0.890 20 C -0.189 4.189 21 N -0.434 5.434 22 Si 0.824 3.176 23 H -0.165 1.165 24 H -0.189 1.189 25 H -0.193 1.193 26 C -0.201 4.201 27 C -0.015 4.015 28 H 0.049 0.951 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.177 0.823 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.186 0.814 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.241 0.759 44 H 0.087 0.913 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.265 2.151 -18.306 21.602 hybrid contribution -1.191 -0.519 1.340 1.867 sum 10.074 1.632 -16.966 19.799 Atomic orbital electron populations 1.21693 0.92443 1.01904 1.02474 1.20905 0.97719 0.97581 0.91772 1.22381 1.03468 0.91870 1.03847 1.22121 1.02721 0.99939 0.95150 1.22055 0.80805 0.79905 0.88273 1.90682 1.56244 1.47221 1.48946 1.45818 1.07164 1.48247 1.26640 1.23797 0.90237 0.96279 0.97989 1.23704 0.97264 0.99160 0.83204 1.85959 1.34088 1.81565 1.21369 1.18556 0.86150 1.01303 0.93359 1.20434 1.01222 0.97664 0.92603 1.21006 0.89612 1.05361 1.01304 1.18190 0.90743 0.98052 0.88621 1.43591 1.29061 1.23296 1.37995 1.17527 0.80327 0.83533 0.85247 1.90644 1.72522 1.27693 1.58579 1.20595 1.12906 1.10286 1.16396 0.89032 1.27123 0.98471 0.93334 1.00005 1.70228 1.24536 1.11725 1.36917 0.84871 0.76914 0.79821 0.76027 1.16534 1.18928 1.19288 1.22285 1.03727 1.02043 0.92092 1.18048 0.92739 1.00089 0.90615 0.95116 0.87696 0.93872 0.88849 0.87281 0.94534 0.93438 0.87374 0.89329 0.82269 0.89054 0.90998 0.81376 0.81364 0.82805 0.75941 0.91334 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 7.77 71.98 0.56 -2.92 16 2 C -0.08 -1.88 0.75 -52.93 -0.04 -1.92 16 3 C -0.16 -2.88 8.08 71.98 0.58 -2.30 16 4 C -0.14 -2.17 8.23 71.98 0.59 -1.58 16 5 C 0.50 19.16 6.44 87.66 0.56 19.72 16 6 O -0.55 -29.42 12.68 -3.07 -0.04 -29.46 16 7 N -0.55 -19.12 3.01 -627.73 -1.89 -21.01 16 8 C 0.04 0.72 4.35 86.41 0.38 1.10 16 9 C 0.04 0.70 7.18 72.16 0.52 1.22 16 10 O -0.32 -8.34 10.32 -92.49 -0.95 -9.30 16 11 C 0.05 1.88 6.53 22.73 0.15 2.02 16 12 C -0.10 -3.23 9.96 22.36 0.22 -3.01 16 13 C -0.15 -5.59 9.96 22.44 0.22 -5.37 16 14 C 0.14 6.92 6.30 38.37 0.24 7.16 16 15 N -0.69 -35.95 5.31 -311.38 -1.65 -37.60 16 16 C 0.53 33.30 7.41 85.09 0.63 33.93 16 17 O -0.61 -44.19 12.32 -4.66 -0.06 -44.24 16 18 C -0.57 -33.91 9.31 23.58 0.22 -33.69 16 19 H 0.09 4.85 7.85 -2.91 -0.02 4.82 16 20 C 0.03 1.63 5.50 85.33 0.47 2.10 16 21 N -0.81 -51.87 11.73 21.85 0.26 -51.61 16 22 Si 1.01 42.44 29.56 68.60 2.03 44.47 16 23 H -0.24 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 C -0.18 -9.48 7.66 22.50 0.17 -9.31 16 27 C 0.08 3.38 6.34 38.09 0.24 3.62 16 28 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.04 1.33 8.06 -2.39 -0.02 1.31 16 31 H 0.09 1.27 4.18 -2.39 -0.01 1.26 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 0.90 5.17 -2.39 -0.01 0.89 16 37 H 0.16 1.85 2.67 -2.39 -0.01 1.85 16 38 H 0.09 1.75 7.89 -2.39 -0.02 1.73 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.17 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.41 17.59 8.78 -92.71 -0.81 16.77 16 44 H 0.28 16.01 8.29 -92.71 -0.77 15.25 16 45 H 0.15 9.76 3.08 -21.55 -0.07 9.69 16 Total: -1.00 -99.33 355.21 3.59 -95.73 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: 0.18 Total: 42.24 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.72 Total: 10.77 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.29 Total: -110.22 kcal Atomic # 8 Polarization: -81.95 SS G_CDS: -1.05 Total: -83.00 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -99.33 3.59 -95.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368934822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.325 kcal (2) G-P(sol) polarization free energy of solvation -99.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds