Wall clock time and date at job start Tue Mar 31 2020 16:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47479 * 2 1 4 4 C 1.50700 * 109.47104 * 240.00288 * 2 1 3 5 5 H 1.08000 * 119.99887 * 239.99544 * 4 2 1 6 6 C 1.37878 * 120.00323 * 59.99928 * 4 2 1 7 7 N 1.31517 * 119.99490 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47074 * 60.00104 * 8 6 4 10 10 H 1.48511 * 109.46772 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47375 * 299.99791 * 8 6 4 12 12 C 1.53001 * 109.47427 * 120.00025 * 2 1 3 13 13 N 1.46505 * 109.47127 * 300.00261 * 12 2 1 14 14 C 1.34773 * 119.99952 * 180.02562 * 13 12 2 15 15 O 1.21366 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.49336 * 119.99873 * 180.02562 * 14 13 12 17 17 O 1.21387 * 120.00165 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99873 * 179.97438 * 16 14 13 19 19 C 1.39866 * 120.00015 * 184.63929 * 18 16 14 20 20 C 1.38937 * 120.20224 * 144.93676 * 19 18 16 21 21 C 1.37827 * 120.27714 * 180.17276 * 20 19 18 22 22 C 1.39330 * 120.34066 * 359.97438 * 21 20 19 23 23 C 1.39000 * 118.98555 * 359.62679 * 22 21 20 24 24 C 1.37598 * 120.84661 * 0.59260 * 23 22 21 25 25 C 1.51658 * 106.99069 * 180.54592 * 23 22 21 26 26 C 1.54700 * 101.94282 * 15.72362 * 25 23 22 27 27 O 1.36216 * 129.78150 * 179.55848 * 22 21 20 28 28 H 1.08999 * 109.47041 * 300.00001 * 1 2 3 29 29 H 1.09003 * 109.47175 * 59.99729 * 1 2 3 30 30 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47681 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47138 * 300.00293 * 3 2 1 33 33 H 1.09009 * 109.46827 * 59.99976 * 3 2 1 34 34 H 0.97002 * 119.99319 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47242 * 180.02562 * 12 2 1 36 36 H 1.09005 * 109.46670 * 59.99830 * 12 2 1 37 37 H 0.96998 * 119.99658 * 359.97438 * 13 12 2 38 38 H 0.96998 * 120.00405 * 4.63511 * 18 16 14 39 39 H 1.08009 * 119.86140 * 0.15111 * 20 19 18 40 40 H 1.07999 * 119.83322 * 180.02562 * 21 20 19 41 41 H 1.07993 * 120.01714 * 179.61700 * 24 23 22 42 42 H 1.08997 * 110.93805 * 257.55502 * 25 23 22 43 43 H 1.08995 * 110.94426 * 133.89563 * 25 23 22 44 44 H 1.08998 * 110.74704 * 92.92503 * 26 25 23 45 45 H 1.09005 * 110.74535 * 216.08231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0077 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8778 -0.4908 3.6695 15 8 2.5756 -1.4776 3.7808 16 6 1.3795 0.2128 4.8888 17 8 0.6812 1.1994 4.7775 18 7 1.7051 -0.2477 6.1129 19 6 1.1606 0.3517 7.2532 20 6 0.8517 -0.4183 8.3677 21 6 0.3117 0.1703 9.4910 22 6 0.0710 1.5423 9.5200 23 6 0.3909 2.3061 8.4035 24 6 0.9260 1.7216 7.2786 25 6 0.0342 3.7429 8.7325 26 6 -0.1189 3.6906 10.2710 27 8 -0.4563 2.3139 10.5109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8901 34 1 0.7087 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3171 -0.9948 6.2031 39 1 1.0352 -1.4826 8.3537 40 1 0.0747 -0.4350 10.3534 41 1 1.1638 2.3268 6.4164 42 1 -0.9037 4.0300 8.2572 43 1 0.8383 4.4198 8.4438 44 1 0.8195 3.9493 10.7614 45 1 -0.9206 4.3508 10.6019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411635596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:55 Heat of formation + Delta-G solvation = -71.736969 kcal Electronic energy + Delta-G solvation = -27723.355978 eV Core-core repulsion = 23706.528885 eV Total energy + Delta-G solvation = -4016.827093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49332 -40.65630 -38.89249 -37.47680 -36.55192 -34.68271 -33.34189 -32.94966 -30.94552 -29.68498 -29.31749 -26.43157 -25.76225 -25.35219 -24.36644 -23.48387 -22.32701 -21.68856 -20.27561 -19.11611 -18.54957 -17.76696 -17.29799 -16.88325 -16.39689 -16.23581 -15.82168 -15.57460 -14.95371 -14.67946 -14.44580 -14.34453 -13.89786 -13.64350 -13.53438 -13.28871 -12.98580 -12.96513 -12.89549 -12.68673 -12.26686 -12.07672 -11.68181 -11.51770 -11.43917 -11.23469 -11.09325 -10.89345 -10.76631 -10.43638 -10.23208 -10.06984 -9.69428 -9.63091 -9.32772 -9.13118 -8.85011 -8.68800 -8.40303 -7.99406 -6.05482 -4.16472 0.83768 1.05539 1.59793 2.38855 2.95462 3.25108 3.27858 3.32677 3.35576 3.49272 3.74327 4.11929 4.28700 4.36649 4.59227 4.66509 4.68230 4.85320 4.92957 5.05256 5.21165 5.32535 5.37471 5.44252 5.55231 5.70888 5.99554 6.04309 6.06776 6.13837 6.18173 6.38528 6.41992 6.54725 6.76140 6.80640 6.87724 6.89092 6.96062 6.96435 7.28932 7.51121 7.54994 7.65795 7.83066 7.96432 8.07470 8.23063 8.35285 8.83433 9.49526 10.95910 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002114 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.452563 B =13244.744101 C =13903.483032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.677 5.677 14 C 0.498 3.502 15 O -0.532 6.532 16 C 0.508 3.492 17 O -0.502 6.502 18 N -0.645 5.645 19 C 0.117 3.883 20 C -0.104 4.104 21 C -0.119 4.119 22 C 0.090 3.910 23 C -0.156 4.156 24 C -0.069 4.069 25 C -0.110 4.110 26 C 0.052 3.948 27 O -0.306 6.306 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.424 0.576 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 3.943 23.687 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.328 5.328 14 C 0.277 3.723 15 O -0.410 6.410 16 C 0.291 3.709 17 O -0.375 6.375 18 N -0.293 5.293 19 C 0.023 3.977 20 C -0.125 4.125 21 C -0.138 4.138 22 C 0.044 3.956 23 C -0.158 4.158 24 C -0.089 4.089 25 C -0.147 4.147 26 C -0.023 4.023 27 O -0.220 6.220 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.262 0.738 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.195 3.997 23.612 23.978 hybrid contribution 0.374 -0.336 -0.967 1.090 sum -0.821 3.662 22.645 22.954 Atomic orbital electron populations 1.21864 0.97567 0.99338 1.00414 1.18385 0.92992 0.92867 0.90226 1.21865 0.98649 0.98245 1.00402 1.20897 1.31811 1.12226 0.89739 0.92375 1.24886 0.94805 0.94917 0.98897 1.69798 1.36359 1.22641 1.23450 0.86604 0.79205 0.79766 0.82106 1.20264 1.21315 1.20263 1.21991 0.98637 0.96108 0.82694 1.46230 1.50222 1.31335 1.05057 1.19710 0.82577 0.85286 0.84683 1.90748 1.37828 1.25793 1.86622 1.20686 0.80674 0.84744 0.84826 1.90758 1.35775 1.24464 1.86532 1.43076 1.46652 1.36104 1.03452 1.17498 1.01331 0.91574 0.87302 1.20645 0.99877 0.99725 0.92214 1.19977 1.03216 0.91211 0.99415 1.19605 0.95682 0.92639 0.87654 1.20609 1.04647 0.96027 0.94500 1.20400 0.98051 0.92968 0.97501 1.21809 1.03574 0.93792 0.95567 1.23820 1.02044 0.81299 0.95110 1.86824 1.70669 1.18178 1.46309 0.97292 0.89396 0.95298 0.95301 0.89403 0.97305 0.92853 0.91832 0.91836 0.75106 0.73834 0.84397 0.84864 0.83821 0.88836 0.88846 0.90533 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.69 16 4 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.31 9.35 55.43 0.52 -22.79 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.58 4.50 -4.04 -0.02 2.57 16 13 N -0.68 -12.08 4.95 -60.76 -0.30 -12.38 16 14 C 0.50 8.34 7.89 -11.64 -0.09 8.25 16 15 O -0.53 -9.70 16.48 5.48 0.09 -9.61 16 16 C 0.51 7.49 7.73 -11.64 -0.09 7.40 16 17 O -0.50 -8.19 13.92 5.46 0.08 -8.12 16 18 N -0.65 -7.67 5.33 -10.25 -0.05 -7.73 16 19 C 0.12 1.35 6.31 -83.65 -0.53 0.82 16 20 C -0.10 -0.99 9.94 -39.47 -0.39 -1.38 16 21 C -0.12 -1.14 10.06 -39.33 -0.40 -1.53 16 22 C 0.09 0.97 7.04 -38.89 -0.27 0.70 16 23 C -0.16 -1.70 6.27 -104.10 -0.65 -2.35 16 24 C -0.07 -0.84 8.69 -39.53 -0.34 -1.19 16 25 C -0.11 -0.87 7.11 -26.52 -0.19 -1.05 16 26 C 0.05 0.35 8.01 38.05 0.30 0.66 16 27 O -0.31 -3.14 11.10 -20.43 -0.23 -3.37 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.01 0.16 6.86 -51.92 -0.36 -0.19 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.41 7.21 5.63 -40.82 -0.23 6.98 16 38 H 0.42 4.24 8.30 -40.82 -0.34 3.90 16 39 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.90 6.24 -52.49 -0.33 1.57 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -29.05 368.69 -7.88 -36.94 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.01 Total: 9.07 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.51 Total: -2.94 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.16 Total: -42.89 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.05 -7.88 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411635596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.802 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds