Wall clock time and date at job start Tue Mar 31 2020 16:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47479 * 2 1 4 4 C 1.50700 * 109.47104 * 240.00288 * 2 1 3 5 5 H 1.08000 * 119.99887 * 239.99544 * 4 2 1 6 6 C 1.37878 * 120.00323 * 59.99928 * 4 2 1 7 7 N 1.31517 * 119.99490 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47074 * 60.00104 * 8 6 4 10 10 H 1.48511 * 109.46772 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47375 * 299.99791 * 8 6 4 12 12 C 1.53001 * 109.47427 * 120.00025 * 2 1 3 13 13 N 1.46505 * 109.47127 * 300.00261 * 12 2 1 14 14 C 1.34773 * 119.99952 * 180.02562 * 13 12 2 15 15 O 1.21366 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.49336 * 119.99873 * 180.02562 * 14 13 12 17 17 O 1.21387 * 120.00165 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99873 * 179.97438 * 16 14 13 19 19 C 1.39866 * 120.00015 * 184.63929 * 18 16 14 20 20 C 1.38937 * 120.20224 * 144.93676 * 19 18 16 21 21 C 1.37827 * 120.27714 * 180.17276 * 20 19 18 22 22 C 1.39330 * 120.34066 * 359.97438 * 21 20 19 23 23 C 1.39000 * 118.98555 * 359.62679 * 22 21 20 24 24 C 1.37598 * 120.84661 * 0.59260 * 23 22 21 25 25 C 1.51658 * 106.99069 * 180.54592 * 23 22 21 26 26 C 1.54700 * 101.94282 * 15.72362 * 25 23 22 27 27 O 1.36216 * 129.78150 * 179.55848 * 22 21 20 28 28 H 1.08999 * 109.47041 * 300.00001 * 1 2 3 29 29 H 1.09003 * 109.47175 * 59.99729 * 1 2 3 30 30 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47681 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47138 * 300.00293 * 3 2 1 33 33 H 1.09009 * 109.46827 * 59.99976 * 3 2 1 34 34 H 0.97002 * 119.99319 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47242 * 180.02562 * 12 2 1 36 36 H 1.09005 * 109.46670 * 59.99830 * 12 2 1 37 37 H 0.96998 * 119.99658 * 359.97438 * 13 12 2 38 38 H 0.96998 * 120.00405 * 4.63511 * 18 16 14 39 39 H 1.08009 * 119.86140 * 0.15111 * 20 19 18 40 40 H 1.07999 * 119.83322 * 180.02562 * 21 20 19 41 41 H 1.07993 * 120.01714 * 179.61700 * 24 23 22 42 42 H 1.08997 * 110.93805 * 257.55502 * 25 23 22 43 43 H 1.08995 * 110.94426 * 133.89563 * 25 23 22 44 44 H 1.08998 * 110.74704 * 92.92503 * 26 25 23 45 45 H 1.09005 * 110.74535 * 216.08231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0077 10 1 1.8259 -0.4204 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8778 -0.4908 3.6695 15 8 2.5756 -1.4776 3.7808 16 6 1.3795 0.2128 4.8888 17 8 0.6812 1.1994 4.7775 18 7 1.7051 -0.2477 6.1129 19 6 1.1606 0.3517 7.2532 20 6 0.8517 -0.4183 8.3677 21 6 0.3117 0.1703 9.4910 22 6 0.0710 1.5423 9.5200 23 6 0.3909 2.3061 8.4035 24 6 0.9260 1.7216 7.2786 25 6 0.0342 3.7429 8.7325 26 6 -0.1189 3.6906 10.2710 27 8 -0.4563 2.3139 10.5109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8901 34 1 0.7087 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3171 -0.9948 6.2031 39 1 1.0352 -1.4826 8.3537 40 1 0.0747 -0.4350 10.3534 41 1 1.1638 2.3268 6.4164 42 1 -0.9037 4.0300 8.2572 43 1 0.8383 4.4198 8.4438 44 1 0.8195 3.9493 10.7614 45 1 -0.9206 4.3508 10.6019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411635596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:54 Heat of formation + Delta-G solvation = -89.738076 kcal Electronic energy + Delta-G solvation = -27724.136564 eV Core-core repulsion = 23706.528885 eV Total energy + Delta-G solvation = -4017.607680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36405 -41.71045 -40.14830 -38.43014 -38.22489 -35.76179 -34.91128 -33.65202 -32.76379 -30.48234 -30.09871 -27.92685 -27.59194 -27.22003 -25.51804 -24.36610 -23.13699 -22.57543 -21.49613 -20.73080 -19.89904 -18.59161 -18.21776 -18.02948 -17.63337 -17.30525 -17.06495 -16.78884 -16.63536 -16.18104 -15.60788 -15.21564 -15.17954 -14.78126 -14.75445 -14.38058 -14.24936 -14.05606 -13.93973 -13.66761 -13.60603 -13.21608 -13.12753 -12.82993 -12.68674 -12.63868 -12.61989 -12.33675 -12.27700 -12.12458 -11.87933 -11.51117 -11.30915 -10.94255 -10.77927 -10.66951 -10.40873 -10.16005 -9.92816 -8.82213 -8.01380 -6.17799 -0.11594 0.25796 0.49306 1.21547 1.46371 1.47765 1.54030 2.02523 2.28834 2.44759 2.60958 2.66070 3.22615 3.29889 3.48888 3.68107 3.88466 4.13312 4.15960 4.23633 4.33191 4.46995 4.48094 4.59229 4.67298 4.69602 4.85212 4.86930 4.91609 4.99115 5.03329 5.04005 5.16704 5.17804 5.19592 5.23930 5.34664 5.47197 5.55266 5.64329 5.67671 5.88038 6.11102 6.14709 6.18400 6.31925 6.40998 6.64700 6.83883 6.89941 7.50152 8.97646 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002114 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.452563 B =13244.744101 C =13903.483032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.050 3.950 3 C -0.124 4.124 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.142 3.858 13 N -0.678 5.678 14 C 0.504 3.496 15 O -0.545 6.545 16 C 0.514 3.486 17 O -0.521 6.521 18 N -0.627 5.627 19 C 0.095 3.905 20 C -0.094 4.094 21 C -0.121 4.121 22 C 0.081 3.919 23 C -0.171 4.171 24 C -0.086 4.086 25 C -0.112 4.112 26 C 0.050 3.950 27 O -0.320 6.320 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.433 0.567 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 3.694 25.704 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.182 4.182 4 C -0.564 4.564 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.330 5.330 14 C 0.284 3.716 15 O -0.424 6.424 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.275 5.275 19 C 0.002 3.998 20 C -0.114 4.114 21 C -0.140 4.140 22 C 0.035 3.965 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.149 4.149 26 C -0.024 4.024 27 O -0.234 6.234 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.273 0.727 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.213 3.742 25.671 25.970 hybrid contribution 0.374 -0.234 -1.467 1.532 sum -0.838 3.507 24.204 24.471 Atomic orbital electron populations 1.21715 0.97393 0.98928 1.00210 1.18387 0.93115 0.93037 0.90540 1.21714 0.98276 0.98009 1.00223 1.21209 1.31796 1.12302 0.91092 0.92932 1.25503 0.95150 0.95594 1.01182 1.69922 1.36960 1.23408 1.23678 0.85770 0.78657 0.78761 0.79332 1.20111 1.21225 1.20066 1.21591 0.98100 0.95561 0.82765 1.46059 1.50628 1.31427 1.04912 1.19984 0.81831 0.84909 0.84914 1.90738 1.38329 1.26439 1.86919 1.20191 0.80762 0.84502 0.84938 1.90762 1.36912 1.25215 1.86709 1.42915 1.46061 1.35814 1.02713 1.17688 1.02706 0.91755 0.87660 1.20921 0.98470 1.00895 0.91068 1.20331 1.02430 0.91121 1.00113 1.19903 0.95456 0.93334 0.87784 1.20902 1.04361 0.97757 0.94179 1.20383 0.99230 0.93407 0.97601 1.21917 1.04050 0.92441 0.96479 1.24094 1.03843 0.80088 0.94358 1.86802 1.70780 1.19632 1.46233 0.95166 0.91823 0.95734 0.95678 0.91840 0.95120 0.93074 0.92418 0.92488 0.74825 0.72732 0.81630 0.82545 0.85472 0.88677 0.87606 0.89056 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.08 71.98 0.58 -5.01 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 4 C -0.53 -26.93 8.01 25.60 0.21 -26.73 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.32 5.15 84.65 0.44 1.76 16 7 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 8 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.14 5.74 4.50 86.38 0.39 6.13 16 13 N -0.68 -23.75 4.95 -464.52 -2.30 -26.05 16 14 C 0.50 16.44 7.89 87.23 0.69 17.13 16 15 O -0.55 -19.38 16.48 -3.30 -0.05 -19.43 16 16 C 0.51 14.76 7.73 87.23 0.67 15.44 16 17 O -0.52 -16.82 13.92 -3.36 -0.05 -16.87 16 18 N -0.63 -14.16 5.33 -304.68 -1.62 -15.78 16 19 C 0.10 2.08 6.31 38.21 0.24 2.33 16 20 C -0.09 -1.56 9.94 22.34 0.22 -1.34 16 21 C -0.12 -2.03 10.06 22.44 0.23 -1.81 16 22 C 0.08 1.62 7.04 22.72 0.16 1.78 16 23 C -0.17 -3.56 6.27 -19.53 -0.12 -3.68 16 24 C -0.09 -2.07 8.69 22.30 0.19 -1.88 16 25 C -0.11 -1.61 7.11 30.73 0.22 -1.39 16 26 C 0.05 0.57 8.01 72.56 0.58 1.16 16 27 O -0.32 -5.97 11.10 -96.01 -1.07 -7.04 16 28 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 29 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 33 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 34 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.41 14.15 5.63 -92.71 -0.52 13.62 16 38 H 0.43 7.97 8.30 -92.71 -0.77 7.20 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.13 3.43 6.24 -2.91 -0.02 3.41 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -61.87 368.69 2.14 -59.73 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.25 Total: 28.16 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.25 Total: 1.14 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -3.72 Total: -89.59 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.17 Total: -43.34 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -61.87 2.14 -59.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411635596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.010 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds