Wall clock time and date at job start Tue Mar 31 2020 16:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47104 * 2 1 4 4 C 1.50705 * 109.46668 * 240.00198 * 2 1 3 5 5 H 1.07998 * 120.00081 * 239.99485 * 4 2 1 6 6 C 1.37876 * 120.00026 * 60.00249 * 4 2 1 7 7 N 1.31515 * 120.00297 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46880 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47299 * 119.99480 * 8 6 4 11 11 H 1.48495 * 109.47403 * 240.00123 * 8 6 4 12 12 C 1.52992 * 109.47300 * 120.00650 * 2 1 3 13 13 N 1.46507 * 109.46972 * 299.99817 * 12 2 1 14 14 C 1.34772 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21365 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.49359 * 119.99847 * 179.97438 * 14 13 12 17 17 O 1.21371 * 120.00216 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99595 * 179.97438 * 16 14 13 19 19 C 1.39721 * 119.99353 * 184.45283 * 18 16 14 20 20 C 1.39094 * 120.09411 * 325.36815 * 19 18 16 21 21 C 1.38100 * 119.67624 * 180.02562 * 20 19 18 22 22 C 1.38026 * 120.44295 * 0.18707 * 21 20 19 23 23 C 1.39329 * 120.39733 * 0.02562 * 22 21 20 24 24 C 1.38384 * 120.08345 * 145.38876 * 19 18 16 25 25 C 1.51928 * 132.11450 * 358.83282 * 24 19 18 26 26 C 1.54715 * 101.77910 * 195.82672 * 25 24 19 27 27 O 1.36151 * 129.85219 * 179.52353 * 23 22 21 28 28 H 1.08997 * 109.46623 * 299.99906 * 1 2 3 29 29 H 1.08998 * 109.47102 * 59.99951 * 1 2 3 30 30 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46779 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47415 * 300.00479 * 3 2 1 33 33 H 1.08997 * 109.46780 * 60.00476 * 3 2 1 34 34 H 0.96997 * 120.00169 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47726 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47486 * 59.99188 * 12 2 1 37 37 H 0.96996 * 119.99651 * 0.02562 * 13 12 2 38 38 H 0.96994 * 120.00210 * 4.45653 * 18 16 14 39 39 H 1.07998 * 120.16001 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.78095 * 180.19111 * 21 20 19 41 41 H 1.07993 * 119.80351 * 180.02562 * 22 21 20 42 42 H 1.08993 * 110.90706 * 77.75606 * 25 24 19 43 43 H 1.09007 * 111.10363 * 313.97726 * 25 24 19 44 44 H 1.08999 * 110.74792 * 216.53766 * 26 25 24 45 45 H 1.08994 * 110.75298 * 93.36103 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1471 -2.2863 -3.6040 10 1 1.1675 -1.5864 -4.8166 11 1 3.1470 -0.1857 -4.8162 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5755 -1.4778 3.7807 16 6 1.3804 0.2133 4.8889 17 8 0.6823 1.1999 4.7777 18 7 1.7061 -0.2473 6.1130 19 6 1.1659 0.3547 7.2524 20 6 0.9282 1.7251 7.2709 21 6 0.3946 2.3112 8.4017 22 6 0.1000 1.5472 9.5128 23 6 0.3379 0.1744 9.5076 24 6 0.8665 -0.4108 8.3656 25 6 0.9870 -1.9002 8.6403 26 6 0.0990 -2.0624 9.8969 27 8 0.1316 -0.7506 10.4852 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 0.7081 1.1610 -3.4844 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7576 2.3564 38 1 2.3154 -0.9966 6.2030 39 1 1.1606 2.3278 6.4054 40 1 0.2064 3.3747 8.4168 41 1 -0.3174 2.0162 10.3915 42 1 2.0199 -2.1737 8.8552 43 1 0.5954 -2.4857 7.8084 44 1 0.5236 -2.8008 10.5770 45 1 -0.9184 -2.3362 9.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411647888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:59 Heat of formation + Delta-G solvation = -71.929491 kcal Electronic energy + Delta-G solvation = -27974.878614 eV Core-core repulsion = 23958.043173 eV Total energy + Delta-G solvation = -4016.835441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60617 -40.61701 -38.86398 -37.44207 -36.58147 -35.09968 -33.41113 -32.48934 -30.96370 -29.93604 -29.18301 -26.45787 -25.77498 -25.36855 -24.27257 -23.55678 -22.55272 -21.56742 -20.23565 -19.15614 -18.68139 -17.92629 -16.98168 -16.79192 -16.40094 -15.89220 -15.85152 -15.74263 -15.39530 -14.97863 -14.66187 -14.32958 -13.75925 -13.64157 -13.48785 -13.36628 -12.98943 -12.96494 -12.76825 -12.34544 -12.28166 -12.10095 -11.62784 -11.46110 -11.38714 -11.30752 -11.22251 -10.93645 -10.71047 -10.49811 -10.45537 -10.23999 -9.71013 -9.64582 -9.33772 -8.84723 -8.72118 -8.62970 -8.42256 -8.29199 -6.06893 -4.17827 0.81625 1.08391 1.58741 2.34078 2.93477 3.23642 3.24222 3.33130 3.36802 3.49978 3.71467 4.07895 4.23114 4.35074 4.60854 4.62638 4.70424 4.90127 5.03314 5.07732 5.20002 5.23352 5.31975 5.41179 5.44771 5.89154 5.91466 6.03600 6.10316 6.16248 6.24355 6.37809 6.40421 6.52154 6.74381 6.79370 6.86276 6.88701 6.91892 6.94732 7.27557 7.49914 7.50034 7.64576 7.79253 7.95249 8.05992 8.20303 8.33725 8.82628 9.48452 10.94588 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.002217 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.140585 B =12628.187474 C =13198.840568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.498 3.502 15 O -0.532 6.532 16 C 0.509 3.491 17 O -0.496 6.496 18 N -0.649 5.649 19 C 0.196 3.804 20 C -0.148 4.148 21 C -0.066 4.066 22 C -0.151 4.151 23 C 0.122 3.878 24 C -0.203 4.203 25 C -0.108 4.108 26 C 0.054 3.946 27 O -0.304 6.304 28 H 0.008 0.992 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.008 0.992 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.423 0.577 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -0.952 23.039 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.006 3.994 13 N -0.328 5.328 14 C 0.277 3.723 15 O -0.410 6.410 16 C 0.292 3.708 17 O -0.369 6.369 18 N -0.296 5.296 19 C 0.102 3.898 20 C -0.168 4.168 21 C -0.085 4.085 22 C -0.171 4.171 23 C 0.076 3.924 24 C -0.206 4.206 25 C -0.145 4.145 26 C -0.021 4.021 27 O -0.218 6.218 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.260 0.740 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.406 -0.845 23.000 23.059 hybrid contribution 0.361 -0.624 -0.982 1.218 sum -1.045 -1.469 22.019 22.092 Atomic orbital electron populations 1.21867 0.97569 0.99332 1.00439 1.18391 0.92989 0.92883 0.90226 1.21864 0.98662 0.98226 1.00436 1.20975 1.31694 1.12198 0.89720 0.92272 1.24886 0.94804 0.94904 0.98915 1.69811 1.36464 1.22688 1.23262 0.86497 0.78644 0.79711 0.82916 1.19754 1.21038 1.21025 1.21998 0.98658 0.96093 0.82669 1.46236 1.50151 1.31347 1.05035 1.19702 0.82613 0.85300 0.84671 1.90748 1.37829 1.25805 1.86604 1.20712 0.80642 0.84720 0.84755 1.90762 1.35399 1.24230 1.86488 1.43168 1.46807 1.35933 1.03674 1.16939 0.96779 0.91334 0.84791 1.21291 1.03085 0.92449 0.99947 1.20796 0.96399 0.99945 0.91363 1.20279 1.06364 0.90062 1.00370 1.19258 0.95178 0.91037 0.86888 1.20512 1.08088 0.96046 0.95957 1.21812 1.01735 0.92242 0.98741 1.23816 1.00504 0.83470 0.94342 1.86845 1.88367 1.15613 1.30983 0.97285 0.89372 0.95306 0.95289 0.89378 0.97284 0.92948 0.91809 0.91842 0.75071 0.73952 0.83491 0.84495 0.85273 0.89025 0.88902 0.87479 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.23 9.35 55.43 0.52 -22.71 16 8 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 13 N -0.68 -11.96 4.95 -60.76 -0.30 -12.26 16 14 C 0.50 8.28 7.89 -11.63 -0.09 8.18 16 15 O -0.53 -9.63 16.48 5.48 0.09 -9.54 16 16 C 0.51 7.47 7.73 -11.62 -0.09 7.38 16 17 O -0.50 -7.99 13.89 5.48 0.08 -7.91 16 18 N -0.65 -7.89 5.30 -10.38 -0.06 -7.94 16 19 C 0.20 2.35 6.29 -83.89 -0.53 1.82 16 20 C -0.15 -1.75 8.71 -39.31 -0.34 -2.09 16 21 C -0.07 -0.65 10.01 -39.71 -0.40 -1.04 16 22 C -0.15 -1.48 10.06 -39.25 -0.39 -1.88 16 23 C 0.12 1.32 7.03 -38.98 -0.27 1.05 16 24 C -0.20 -2.17 6.21 -103.76 -0.64 -2.81 16 25 C -0.11 -0.84 7.12 -26.37 -0.19 -1.03 16 26 C 0.05 0.37 8.00 38.06 0.30 0.68 16 27 O -0.30 -3.11 11.11 -20.22 -0.22 -3.33 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 34 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.41 7.14 5.63 -40.82 -0.23 6.91 16 38 H 0.42 4.47 8.29 -40.82 -0.34 4.13 16 39 H 0.15 1.88 6.21 -52.49 -0.33 1.55 16 40 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -28.67 368.61 -7.88 -36.55 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.01 Total: 9.25 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.51 Total: -2.95 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.16 Total: -42.91 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.67 -7.88 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411647888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.378 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds