Wall clock time and date at job start Tue Mar 31 2020 16:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47104 * 2 1 4 4 C 1.50705 * 109.46668 * 240.00198 * 2 1 3 5 5 H 1.07998 * 120.00081 * 239.99485 * 4 2 1 6 6 C 1.37876 * 120.00026 * 60.00249 * 4 2 1 7 7 N 1.31515 * 120.00297 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46880 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47299 * 119.99480 * 8 6 4 11 11 H 1.48495 * 109.47403 * 240.00123 * 8 6 4 12 12 C 1.52992 * 109.47300 * 120.00650 * 2 1 3 13 13 N 1.46507 * 109.46972 * 299.99817 * 12 2 1 14 14 C 1.34772 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21365 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.49359 * 119.99847 * 179.97438 * 14 13 12 17 17 O 1.21371 * 120.00216 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99595 * 179.97438 * 16 14 13 19 19 C 1.39721 * 119.99353 * 184.45283 * 18 16 14 20 20 C 1.39094 * 120.09411 * 325.36815 * 19 18 16 21 21 C 1.38100 * 119.67624 * 180.02562 * 20 19 18 22 22 C 1.38026 * 120.44295 * 0.18707 * 21 20 19 23 23 C 1.39329 * 120.39733 * 0.02562 * 22 21 20 24 24 C 1.38384 * 120.08345 * 145.38876 * 19 18 16 25 25 C 1.51928 * 132.11450 * 358.83282 * 24 19 18 26 26 C 1.54715 * 101.77910 * 195.82672 * 25 24 19 27 27 O 1.36151 * 129.85219 * 179.52353 * 23 22 21 28 28 H 1.08997 * 109.46623 * 299.99906 * 1 2 3 29 29 H 1.08998 * 109.47102 * 59.99951 * 1 2 3 30 30 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46779 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47415 * 300.00479 * 3 2 1 33 33 H 1.08997 * 109.46780 * 60.00476 * 3 2 1 34 34 H 0.96997 * 120.00169 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47726 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.47486 * 59.99188 * 12 2 1 37 37 H 0.96996 * 119.99651 * 0.02562 * 13 12 2 38 38 H 0.96994 * 120.00210 * 4.45653 * 18 16 14 39 39 H 1.07998 * 120.16001 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.78095 * 180.19111 * 21 20 19 41 41 H 1.07993 * 119.80351 * 180.02562 * 22 21 20 42 42 H 1.08993 * 110.90706 * 77.75606 * 25 24 19 43 43 H 1.09007 * 111.10363 * 313.97726 * 25 24 19 44 44 H 1.08999 * 110.74792 * 216.53766 * 26 25 24 45 45 H 1.08994 * 110.75298 * 93.36103 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1471 -2.2863 -3.6040 10 1 1.1675 -1.5864 -4.8166 11 1 3.1470 -0.1857 -4.8162 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5755 -1.4778 3.7807 16 6 1.3804 0.2133 4.8889 17 8 0.6823 1.1999 4.7777 18 7 1.7061 -0.2473 6.1130 19 6 1.1659 0.3547 7.2524 20 6 0.9282 1.7251 7.2709 21 6 0.3946 2.3112 8.4017 22 6 0.1000 1.5472 9.5128 23 6 0.3379 0.1744 9.5076 24 6 0.8665 -0.4108 8.3656 25 6 0.9870 -1.9002 8.6403 26 6 0.0990 -2.0624 9.8969 27 8 0.1316 -0.7506 10.4852 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 0.7081 1.1610 -3.4844 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7576 2.3564 38 1 2.3154 -0.9966 6.2030 39 1 1.1606 2.3278 6.4054 40 1 0.2064 3.3747 8.4168 41 1 -0.3174 2.0162 10.3915 42 1 2.0199 -2.1737 8.8552 43 1 0.5954 -2.4857 7.8084 44 1 0.5236 -2.8008 10.5770 45 1 -0.9184 -2.3362 9.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411647888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:58 Heat of formation + Delta-G solvation = -89.480170 kcal Electronic energy + Delta-G solvation = -27975.639669 eV Core-core repulsion = 23958.043173 eV Total energy + Delta-G solvation = -4017.596496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.48304 -41.68221 -40.12131 -38.36085 -38.23986 -36.12401 -35.01043 -33.23008 -32.77211 -30.73470 -29.97634 -27.93914 -27.59230 -27.23100 -25.49792 -24.29067 -23.49103 -22.44284 -21.41941 -20.73881 -19.99500 -18.88017 -18.08234 -17.76604 -17.60929 -17.20367 -17.03551 -16.67606 -16.57907 -16.37307 -16.12489 -15.60301 -15.15070 -14.79098 -14.56264 -14.37270 -14.20971 -14.05953 -14.03436 -13.64984 -13.29193 -13.22898 -13.11723 -12.74741 -12.71976 -12.59305 -12.53012 -12.28893 -12.23458 -12.11722 -12.02590 -11.51590 -11.39031 -11.29530 -10.79521 -10.67376 -10.42273 -10.17730 -9.43900 -9.12268 -8.02081 -6.18402 -0.15426 0.27540 0.49491 1.16833 1.43060 1.47717 1.56490 2.00111 2.27294 2.42884 2.55477 2.68933 3.22164 3.29961 3.42138 3.61255 3.96782 4.11995 4.16076 4.31613 4.33050 4.42835 4.46301 4.47679 4.66983 4.68861 4.79894 4.85349 4.90806 5.02500 5.03261 5.07349 5.12501 5.16632 5.17622 5.30392 5.43876 5.47003 5.56497 5.64334 5.67750 5.84172 6.11078 6.12873 6.18134 6.28235 6.40662 6.58629 6.81829 6.88819 7.49851 8.97341 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.002217 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.140585 B =12628.187474 C =13198.840568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.050 3.950 3 C -0.125 4.125 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.143 3.857 13 N -0.677 5.677 14 C 0.503 3.497 15 O -0.545 6.545 16 C 0.516 3.484 17 O -0.512 6.512 18 N -0.633 5.633 19 C 0.174 3.826 20 C -0.164 4.164 21 C -0.064 4.064 22 C -0.151 4.151 23 C 0.109 3.891 24 C -0.207 4.207 25 C -0.109 4.109 26 C 0.050 3.950 27 O -0.317 6.317 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.430 0.570 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 -1.439 24.903 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.020 3.980 13 N -0.329 5.329 14 C 0.283 3.717 15 O -0.424 6.424 16 C 0.298 3.702 17 O -0.387 6.387 18 N -0.280 5.280 19 C 0.080 3.920 20 C -0.184 4.184 21 C -0.083 4.083 22 C -0.170 4.170 23 C 0.063 3.937 24 C -0.210 4.210 25 C -0.145 4.145 26 C -0.024 4.024 27 O -0.231 6.231 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.269 0.731 39 H 0.152 0.848 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.152 0.848 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.499 -1.346 24.904 24.985 hybrid contribution 0.380 -0.485 -1.437 1.564 sum -1.119 -1.832 23.467 23.565 Atomic orbital electron populations 1.21721 0.97375 0.98956 1.00251 1.18383 0.93121 0.93023 0.90498 1.21717 0.98298 0.98008 1.00268 1.21269 1.31664 1.12230 0.91103 0.92966 1.25492 0.95147 0.95572 1.01163 1.69929 1.37053 1.23442 1.23573 0.85666 0.78036 0.78736 0.80109 1.19595 1.20978 1.20960 1.21596 0.98106 0.95559 0.82733 1.46059 1.50547 1.31441 1.04859 1.19960 0.81878 0.84923 0.84894 1.90739 1.38330 1.26457 1.86899 1.20204 0.80700 0.84472 0.84776 1.90764 1.36415 1.24878 1.86634 1.43002 1.46288 1.35680 1.03025 1.17083 0.98253 0.91709 0.84984 1.21349 1.04055 0.92601 1.00411 1.21064 0.95423 1.01223 0.90544 1.20604 1.05469 0.89950 1.00969 1.19532 0.95381 0.91685 0.87101 1.20771 1.07253 0.97645 0.95326 1.21930 1.02886 0.90394 0.99338 1.24086 1.01117 0.82681 0.94508 1.86831 1.88306 1.16654 1.31305 0.95107 0.91820 0.95704 0.95667 0.91836 0.95057 0.93072 0.92424 0.92473 0.74755 0.73119 0.84776 0.82021 0.83229 0.87637 0.88386 0.84766 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.08 71.98 0.58 -4.99 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.13 -5.55 8.08 71.98 0.58 -4.97 16 4 C -0.52 -26.75 8.01 25.60 0.21 -26.54 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.34 5.15 84.65 0.44 1.78 16 7 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 8 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.14 5.70 4.50 86.38 0.39 6.09 16 13 N -0.68 -23.43 4.95 -464.51 -2.30 -25.73 16 14 C 0.50 16.32 7.89 87.24 0.69 17.00 16 15 O -0.55 -19.29 16.48 -3.29 -0.05 -19.34 16 16 C 0.52 14.76 7.73 87.24 0.67 15.44 16 17 O -0.51 -16.21 13.89 -3.31 -0.05 -16.26 16 18 N -0.63 -14.81 5.30 -305.12 -1.62 -16.42 16 19 C 0.17 3.99 6.29 38.12 0.24 4.23 16 20 C -0.16 -3.77 8.71 22.44 0.20 -3.58 16 21 C -0.06 -1.15 10.01 22.19 0.22 -0.93 16 22 C -0.15 -2.67 10.06 22.48 0.23 -2.44 16 23 C 0.11 2.17 7.03 22.66 0.16 2.33 16 24 C -0.21 -4.12 6.21 -19.31 -0.12 -4.24 16 25 C -0.11 -1.46 7.12 30.83 0.22 -1.24 16 26 C 0.05 0.58 8.00 72.57 0.58 1.16 16 27 O -0.32 -5.81 11.11 -95.27 -1.06 -6.87 16 28 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 29 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 33 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 34 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 13.95 5.63 -92.71 -0.52 13.43 16 38 H 0.43 8.61 8.29 -92.71 -0.77 7.84 16 39 H 0.13 3.41 6.21 -2.91 -0.02 3.39 16 40 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -60.67 368.61 2.16 -58.51 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.25 Total: 28.55 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.25 Total: 1.35 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.72 Total: -89.72 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.16 Total: -42.47 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.67 2.16 -58.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411647888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.966 kcal (2) G-P(sol) polarization free energy of solvation -60.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds