Wall clock time and date at job start Tue Mar 31 2020 17:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.46756 * 2 1 4 4 N 1.46501 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.34530 * 126.69087 * 90.02085 * 4 3 2 6 6 O 1.21532 * 123.76975 * 359.96994 * 5 4 3 7 7 N 1.33790 * 112.45445 * 179.97438 * 5 4 3 8 8 C 1.40218 * 124.17593 * 179.97438 * 7 5 4 9 9 C 1.39246 * 119.94099 * 353.74073 * 8 7 5 10 10 C 1.38499 * 120.43456 * 179.97438 * 9 8 7 11 11 C 1.37684 * 120.31717 * 0.02562 * 10 9 8 12 12 C 1.40732 * 119.87331 * 0.02562 * 11 10 9 13 13 C 1.41411 * 120.21120 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99788 * 145.24434 * 13 12 11 15 15 C 1.39934 * 119.99804 * 325.24858 * 13 12 11 16 16 N 1.30824 * 119.99967 * 4.43465 * 15 13 12 17 17 Si 1.86797 * 119.99478 * 184.43125 * 15 13 12 18 18 H 1.48498 * 109.46968 * 95.00163 * 17 15 13 19 19 H 1.48500 * 109.47071 * 214.99724 * 17 15 13 20 20 H 1.48496 * 109.47746 * 335.00023 * 17 15 13 21 21 C 1.38197 * 119.94508 * 173.72380 * 8 7 5 22 22 C 1.34766 * 111.65113 * 0.23253 * 7 5 4 23 23 O 1.21231 * 127.16210 * 179.72946 * 22 7 5 24 24 C 1.47314 * 126.68997 * 269.98775 * 4 3 2 25 25 H 1.09001 * 110.59605 * 298.55462 * 24 4 3 26 26 C 1.52996 * 110.59961 * 61.34942 * 24 4 3 27 27 O 1.42901 * 109.47398 * 65.00174 * 26 24 4 28 28 C 1.42895 * 113.99994 * 179.97438 * 27 26 24 29 29 H 1.08998 * 109.47619 * 60.00411 * 1 2 3 30 30 H 1.09011 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47457 * 299.99713 * 1 2 3 32 32 H 1.08996 * 109.46729 * 240.00260 * 2 1 3 33 33 H 1.08998 * 109.46889 * 120.00166 * 2 1 3 34 34 H 1.09001 * 109.47707 * 60.00392 * 3 2 1 35 35 H 1.08998 * 109.47557 * 299.99757 * 3 2 1 36 36 H 1.07999 * 119.78061 * 0.25556 * 9 8 7 37 37 H 1.08002 * 119.84219 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.06413 * 179.97438 * 11 10 9 39 39 H 0.97000 * 119.99513 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.15605 * 0.02562 * 21 8 7 41 41 H 1.09000 * 109.47142 * 185.00032 * 26 24 4 42 42 H 1.09002 * 109.47229 * 304.99698 * 26 24 4 43 43 H 1.09003 * 109.46845 * 60.00621 * 28 27 26 44 44 H 1.09002 * 109.47371 * 179.97438 * 28 27 26 45 45 H 1.08997 * 109.47880 * 300.00174 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3082 1.4432 -1.0797 6 8 3.9013 1.4432 -2.2249 7 7 5.6052 1.4437 -0.7512 8 6 6.6535 1.4439 -1.6824 9 6 6.3767 1.3120 -3.0407 10 6 7.4042 1.3114 -3.9693 11 6 8.7121 1.4408 -3.5588 12 6 9.0069 1.5739 -2.1891 13 6 10.3476 1.7078 -1.7596 14 1 10.5824 2.3307 -0.9092 15 6 11.3698 1.0334 -2.4366 16 7 11.0977 0.3491 -3.5180 17 14 13.1229 1.1103 -1.7963 18 1 13.3903 -0.0746 -0.9421 19 1 14.0683 1.1183 -2.9415 20 1 13.3040 2.3481 -0.9963 21 6 7.9597 1.5753 -1.2506 22 6 5.7797 1.4384 0.5851 23 8 6.8325 1.4328 1.1861 24 6 4.3855 1.4427 1.1803 25 1 4.2237 2.3390 1.7792 26 6 4.1570 0.1860 2.0224 27 8 4.5493 -0.9666 1.2743 28 6 4.3758 -2.2004 1.9740 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.3536 1.2140 -3.3725 37 1 7.1786 1.2080 -5.0204 38 1 9.5102 1.4394 -4.2864 39 1 11.8063 -0.1187 -3.9870 40 1 8.1752 1.6775 -0.1973 41 1 4.7510 0.2467 2.9343 42 1 3.1009 0.1091 2.2812 43 1 3.3244 -2.3270 2.2319 44 1 4.6956 -3.0265 1.3388 45 1 4.9746 -2.1891 2.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414358059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:58 Heat of formation + Delta-G solvation = -51.517416 kcal Electronic energy + Delta-G solvation = -29465.400266 eV Core-core repulsion = 25449.449959 eV Total energy + Delta-G solvation = -4015.950307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36382 -38.45427 -38.32643 -37.30093 -36.12568 -35.38331 -33.84273 -32.85640 -30.27426 -29.73882 -28.98448 -26.71787 -26.22531 -25.32646 -24.26849 -22.54261 -21.96765 -21.32116 -20.06431 -19.88111 -17.92764 -17.22517 -16.69536 -16.55180 -16.17575 -15.84233 -15.33211 -15.26571 -14.94981 -14.87011 -14.79705 -14.47312 -14.13839 -13.77883 -13.33816 -13.05355 -12.87617 -12.86405 -12.60778 -12.35160 -12.12664 -12.11054 -11.75708 -11.58306 -11.49823 -11.23222 -11.17580 -11.04327 -10.89176 -10.79965 -10.48924 -9.93589 -9.88747 -9.75117 -9.41922 -9.13746 -8.98636 -8.90868 -7.37356 -6.95475 -6.53659 -4.33456 1.90426 2.29083 2.68402 2.86893 3.11739 3.14519 3.19755 3.24894 3.44955 3.69067 4.03657 4.07214 4.51050 4.60290 4.76968 4.78694 4.84219 4.99393 5.00240 5.08661 5.09118 5.16249 5.23947 5.36387 5.51668 5.55084 5.64022 5.69134 5.79797 5.97596 6.04659 6.08588 6.35746 6.46342 6.78603 6.86422 6.92810 7.08192 7.10555 7.35788 7.47878 7.62866 7.76032 8.03063 8.11101 8.13452 8.29220 8.51813 8.72346 8.99540 9.01252 10.37511 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.003462 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.839009 B = 8085.615687 C = 8905.276164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.153 3.847 4 N -0.623 5.623 5 C 0.706 3.294 6 O -0.529 6.529 7 N -0.503 5.503 8 C 0.131 3.869 9 C -0.233 4.233 10 C -0.102 4.102 11 C -0.151 4.151 12 C 0.114 3.886 13 C -0.462 4.462 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.814 5.814 17 Si 0.916 3.084 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.221 4.221 22 C 0.530 3.470 23 O -0.451 6.451 24 C 0.093 3.907 25 H 0.137 0.863 26 C 0.063 3.937 27 O -0.380 6.380 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.277 0.723 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 -1.217 11.545 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.032 3.968 4 N -0.362 5.362 5 C 0.409 3.591 6 O -0.403 6.403 7 N -0.238 5.238 8 C 0.042 3.958 9 C -0.254 4.254 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.111 3.889 13 C -0.493 4.493 14 H 0.094 0.906 15 C -0.144 4.144 16 N -0.441 5.441 17 Si 0.741 3.259 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.242 4.242 22 C 0.317 3.683 23 O -0.320 6.320 24 C -0.015 4.015 25 H 0.154 0.846 26 C -0.015 4.015 27 O -0.298 6.298 28 C -0.062 4.062 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.352 -1.336 10.853 20.510 hybrid contribution 0.671 -0.311 0.612 0.960 sum -16.681 -1.647 11.464 20.307 Atomic orbital electron populations 1.21697 0.95019 1.02035 1.01891 1.22035 0.95863 0.97091 1.03387 1.21344 0.74576 0.97320 1.03520 1.47669 1.05847 1.77942 1.04766 1.15810 0.80614 0.77523 0.85119 1.90830 1.76819 1.54353 1.18295 1.43670 1.07061 1.64664 1.08407 1.17578 0.84850 1.05745 0.87578 1.20969 1.00294 1.13546 0.90581 1.20674 0.93285 1.01059 0.97129 1.21749 0.94849 1.03673 0.96833 1.17472 0.92240 0.88509 0.90707 1.19471 0.90757 1.26123 1.12928 0.90575 1.25843 1.01016 0.93696 0.93836 1.69757 1.34466 1.25154 1.14737 0.86181 0.81149 0.79554 0.79038 1.19683 1.20339 1.18680 1.21433 0.89830 1.12473 1.00449 1.20402 0.90419 0.75341 0.82175 1.90739 1.30050 1.45081 1.66170 1.22262 0.88944 1.00228 0.90045 0.84551 1.22675 1.00219 0.84685 0.93928 1.88027 1.86397 1.14039 1.41358 1.22745 0.99702 0.86224 0.97482 0.92352 0.92432 0.92707 0.90996 0.91628 0.89949 0.89217 0.85216 0.88576 0.85103 0.91229 0.85702 0.90804 0.91295 0.94127 0.89359 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.15 -1.30 6.12 -26.74 -0.16 -1.46 16 3 C 0.15 1.44 5.87 -4.05 -0.02 1.41 16 4 N -0.62 -8.29 2.72 -172.40 -0.47 -8.76 16 5 C 0.71 13.25 8.23 -88.02 -0.72 12.53 16 6 O -0.53 -11.25 14.31 5.34 0.08 -11.17 16 7 N -0.50 -10.52 2.83 -64.40 -0.18 -10.71 16 8 C 0.13 3.26 6.55 -83.66 -0.55 2.71 16 9 C -0.23 -5.83 9.27 -39.11 -0.36 -6.19 16 10 C -0.10 -2.57 10.02 -39.69 -0.40 -2.96 16 11 C -0.15 -4.11 8.67 -38.84 -0.34 -4.45 16 12 C 0.11 3.19 5.55 -106.85 -0.59 2.60 16 13 C -0.46 -12.86 9.04 -37.74 -0.34 -13.20 16 14 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.07 1.86 5.42 -17.35 -0.09 1.76 16 16 N -0.81 -21.87 10.60 55.55 0.59 -21.28 16 17 Si 0.92 19.73 29.56 -169.99 -5.03 14.70 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.22 -5.89 9.05 -38.70 -0.35 -6.24 16 22 C 0.53 9.72 6.92 -10.55 -0.07 9.65 16 23 O -0.45 -9.42 15.06 5.60 0.08 -9.34 16 24 C 0.09 1.14 3.88 -68.20 -0.26 0.87 16 25 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 26 C 0.06 0.64 5.19 37.16 0.19 0.83 16 27 O -0.38 -5.12 10.04 -35.23 -0.35 -5.47 16 28 C 0.03 0.34 11.01 101.05 1.11 1.45 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.56 6.13 -51.93 -0.32 0.24 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.13 3.18 5.15 -52.49 -0.27 2.91 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.13 3.64 6.13 -52.49 -0.32 3.32 16 39 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 40 H 0.13 3.34 5.36 -52.49 -0.28 3.06 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -33.82 370.10 -8.45 -42.27 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.15 Total: 5.50 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.60 Total: -1.31 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.06 Total: -40.75 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.19 Total: -25.98 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.82 -8.45 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414358059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.247 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds