Wall clock time and date at job start Tue Mar 31 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.46756 * 2 1 4 4 N 1.46501 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.34530 * 126.69087 * 90.02085 * 4 3 2 6 6 O 1.21532 * 123.76975 * 359.96994 * 5 4 3 7 7 N 1.33790 * 112.45445 * 179.97438 * 5 4 3 8 8 C 1.40218 * 124.17593 * 179.97438 * 7 5 4 9 9 C 1.39246 * 119.94099 * 353.74073 * 8 7 5 10 10 C 1.38499 * 120.43456 * 179.97438 * 9 8 7 11 11 C 1.37684 * 120.31717 * 0.02562 * 10 9 8 12 12 C 1.40732 * 119.87331 * 0.02562 * 11 10 9 13 13 C 1.41411 * 120.21120 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99788 * 145.24434 * 13 12 11 15 15 C 1.39934 * 119.99804 * 325.24858 * 13 12 11 16 16 N 1.30824 * 119.99967 * 4.43465 * 15 13 12 17 17 Si 1.86797 * 119.99478 * 184.43125 * 15 13 12 18 18 H 1.48498 * 109.46968 * 95.00163 * 17 15 13 19 19 H 1.48500 * 109.47071 * 214.99724 * 17 15 13 20 20 H 1.48496 * 109.47746 * 335.00023 * 17 15 13 21 21 C 1.38197 * 119.94508 * 173.72380 * 8 7 5 22 22 C 1.34766 * 111.65113 * 0.23253 * 7 5 4 23 23 O 1.21231 * 127.16210 * 179.72946 * 22 7 5 24 24 C 1.47314 * 126.68997 * 269.98775 * 4 3 2 25 25 H 1.09001 * 110.59605 * 298.55462 * 24 4 3 26 26 C 1.52996 * 110.59961 * 61.34942 * 24 4 3 27 27 O 1.42901 * 109.47398 * 65.00174 * 26 24 4 28 28 C 1.42895 * 113.99994 * 179.97438 * 27 26 24 29 29 H 1.08998 * 109.47619 * 60.00411 * 1 2 3 30 30 H 1.09011 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47457 * 299.99713 * 1 2 3 32 32 H 1.08996 * 109.46729 * 240.00260 * 2 1 3 33 33 H 1.08998 * 109.46889 * 120.00166 * 2 1 3 34 34 H 1.09001 * 109.47707 * 60.00392 * 3 2 1 35 35 H 1.08998 * 109.47557 * 299.99757 * 3 2 1 36 36 H 1.07999 * 119.78061 * 0.25556 * 9 8 7 37 37 H 1.08002 * 119.84219 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.06413 * 179.97438 * 11 10 9 39 39 H 0.97000 * 119.99513 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.15605 * 0.02562 * 21 8 7 41 41 H 1.09000 * 109.47142 * 185.00032 * 26 24 4 42 42 H 1.09002 * 109.47229 * 304.99698 * 26 24 4 43 43 H 1.09003 * 109.46845 * 60.00621 * 28 27 26 44 44 H 1.09002 * 109.47371 * 179.97438 * 28 27 26 45 45 H 1.08997 * 109.47880 * 300.00174 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3082 1.4432 -1.0797 6 8 3.9013 1.4432 -2.2249 7 7 5.6052 1.4437 -0.7512 8 6 6.6535 1.4439 -1.6824 9 6 6.3767 1.3120 -3.0407 10 6 7.4042 1.3114 -3.9693 11 6 8.7121 1.4408 -3.5588 12 6 9.0069 1.5739 -2.1891 13 6 10.3476 1.7078 -1.7596 14 1 10.5824 2.3307 -0.9092 15 6 11.3698 1.0334 -2.4366 16 7 11.0977 0.3491 -3.5180 17 14 13.1229 1.1103 -1.7963 18 1 13.3903 -0.0746 -0.9421 19 1 14.0683 1.1183 -2.9415 20 1 13.3040 2.3481 -0.9963 21 6 7.9597 1.5753 -1.2506 22 6 5.7797 1.4384 0.5851 23 8 6.8325 1.4328 1.1861 24 6 4.3855 1.4427 1.1803 25 1 4.2237 2.3390 1.7792 26 6 4.1570 0.1860 2.0224 27 8 4.5493 -0.9666 1.2743 28 6 4.3758 -2.2004 1.9740 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.3536 1.2140 -3.3725 37 1 7.1786 1.2080 -5.0204 38 1 9.5102 1.4394 -4.2864 39 1 11.8063 -0.1187 -3.9870 40 1 8.1752 1.6775 -0.1973 41 1 4.7510 0.2467 2.9343 42 1 3.1009 0.1091 2.2812 43 1 3.3244 -2.3270 2.2319 44 1 4.6956 -3.0265 1.3388 45 1 4.9746 -2.1891 2.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414358059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:57 Heat of formation + Delta-G solvation = -72.765601 kcal Electronic energy + Delta-G solvation = -29466.321657 eV Core-core repulsion = 25449.449959 eV Total energy + Delta-G solvation = -4016.871698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.75925 -39.90923 -39.69697 -38.75288 -37.38225 -36.82685 -35.44953 -34.23284 -31.83215 -31.16587 -30.67685 -27.64102 -27.32510 -27.15651 -25.52303 -23.86645 -23.45362 -22.42189 -21.73602 -21.40561 -19.64884 -18.41316 -18.14567 -17.79409 -17.38185 -17.18366 -17.01939 -16.58829 -16.45417 -16.16194 -15.96859 -15.60912 -15.34566 -15.07615 -14.96461 -14.70908 -14.26533 -14.04255 -13.82482 -13.57716 -13.35512 -13.13280 -13.02304 -12.97122 -12.81060 -12.79805 -12.60356 -12.33052 -12.22729 -12.14396 -11.72924 -11.59744 -11.57077 -11.23126 -11.05682 -10.71978 -10.65310 -10.07987 -9.44424 -8.93501 -8.53575 -6.46042 0.47341 0.80656 0.88390 1.02429 1.37438 1.47789 1.52572 1.91018 2.09179 2.22946 2.60938 2.76480 2.89838 3.59696 3.63900 3.73746 4.05305 4.10657 4.22070 4.29848 4.32162 4.36908 4.42614 4.44283 4.49447 4.57235 4.62969 4.70886 4.77731 4.83792 4.95134 5.01722 5.02637 5.15048 5.24958 5.29302 5.34212 5.39838 5.54419 5.56499 5.72653 6.03448 6.05358 6.11231 6.17824 6.30087 6.40393 6.62186 6.89582 6.92510 7.03488 8.39542 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.003462 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.839009 B = 8085.615687 C = 8905.276164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.144 3.856 4 N -0.602 5.602 5 C 0.695 3.305 6 O -0.565 6.565 7 N -0.521 5.521 8 C 0.137 3.863 9 C -0.243 4.243 10 C -0.099 4.099 11 C -0.174 4.174 12 C 0.088 3.912 13 C -0.497 4.497 14 H 0.072 0.928 15 C 0.029 3.971 16 N -0.839 5.839 17 Si 0.992 3.008 18 H -0.266 1.266 19 H -0.262 1.262 20 H -0.259 1.259 21 C -0.241 4.241 22 C 0.516 3.484 23 O -0.487 6.487 24 C 0.107 3.893 25 H 0.190 0.810 26 C 0.061 3.939 27 O -0.424 6.424 28 C 0.032 3.968 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.769 -1.150 14.145 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.026 3.974 4 N -0.340 5.340 5 C 0.399 3.601 6 O -0.442 6.442 7 N -0.256 5.256 8 C 0.047 3.953 9 C -0.263 4.263 10 C -0.117 4.117 11 C -0.194 4.194 12 C 0.085 3.915 13 C -0.528 4.528 14 H 0.090 0.910 15 C -0.184 4.184 16 N -0.467 5.467 17 Si 0.813 3.187 18 H -0.191 1.191 19 H -0.187 1.187 20 H -0.182 1.182 21 C -0.263 4.263 22 C 0.306 3.694 23 O -0.358 6.358 24 C 0.000 4.000 25 H 0.207 0.793 26 C -0.016 4.016 27 O -0.344 6.344 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.390 -1.274 13.498 23.660 hybrid contribution 1.150 -0.366 -0.174 1.219 sum -18.241 -1.640 13.324 22.648 Atomic orbital electron populations 1.21662 0.92961 1.02514 1.02931 1.21969 0.97508 0.96350 1.01968 1.21827 0.71759 0.98145 1.05693 1.47868 1.06957 1.75803 1.03336 1.16055 0.80357 0.77699 0.86018 1.90779 1.77116 1.56245 1.20045 1.43900 1.07271 1.65349 1.09104 1.17646 0.85672 1.03426 0.88595 1.21156 1.00488 1.13778 0.90906 1.20948 0.92562 0.99622 0.98612 1.21676 0.95420 1.05920 0.96376 1.17836 0.93104 0.88992 0.91520 1.19712 0.91651 1.27618 1.13778 0.91005 1.26787 1.05301 0.92559 0.93709 1.69824 1.36280 1.25084 1.15479 0.85045 0.75238 0.79666 0.78797 1.19092 1.18671 1.18224 1.21424 0.90717 1.14164 0.99947 1.21563 0.92780 0.73746 0.81316 1.90703 1.32224 1.46385 1.66466 1.22634 0.83846 1.03943 0.89534 0.79297 1.22950 1.03081 0.82375 0.93235 1.87979 1.87215 1.15869 1.43371 1.22859 1.01667 0.84657 0.97199 0.92834 0.92308 0.90130 0.94954 0.90560 0.84718 0.90067 0.84637 0.86017 0.86216 0.90297 0.86390 0.89077 0.86953 0.91284 0.90573 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.14 -2.10 6.12 30.59 0.19 -1.91 16 3 C 0.14 2.18 5.87 86.38 0.51 2.69 16 4 N -0.60 -14.53 2.72 -817.79 -2.22 -16.75 16 5 C 0.70 26.06 8.23 179.44 1.48 27.54 16 6 O -0.57 -24.50 14.31 -3.82 -0.05 -24.56 16 7 N -0.52 -22.22 2.83 -594.92 -1.68 -23.90 16 8 C 0.14 7.11 6.55 38.03 0.25 7.36 16 9 C -0.24 -12.58 9.27 22.57 0.21 -12.37 16 10 C -0.10 -5.12 10.02 22.20 0.22 -4.90 16 11 C -0.17 -9.93 8.67 22.75 0.20 -9.73 16 12 C 0.09 5.23 5.55 -21.31 -0.12 5.12 16 13 C -0.50 -28.97 9.04 23.46 0.21 -28.75 16 14 H 0.07 4.08 7.85 -2.91 -0.02 4.06 16 15 C 0.03 1.54 5.42 85.25 0.46 2.00 16 16 N -0.84 -46.28 10.60 21.82 0.23 -46.05 16 17 Si 0.99 40.84 29.56 68.60 2.03 42.87 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 C -0.24 -13.60 9.05 22.84 0.21 -13.40 16 22 C 0.52 18.82 6.92 87.94 0.61 19.43 16 23 O -0.49 -20.74 15.06 -2.88 -0.04 -20.79 16 24 C 0.11 2.26 3.88 44.37 0.17 2.43 16 25 H 0.19 2.12 8.14 -2.39 -0.02 2.10 16 26 C 0.06 0.98 5.19 71.98 0.37 1.36 16 27 O -0.42 -10.68 10.04 -148.98 -1.50 -12.18 16 28 C 0.03 0.55 11.01 113.37 1.25 1.80 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.98 6.13 -2.39 -0.01 0.97 16 34 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.44 8.03 -2.39 -0.02 1.42 16 36 H 0.14 6.87 5.15 -2.91 -0.02 6.86 16 37 H 0.12 5.52 8.06 -2.91 -0.02 5.50 16 38 H 0.12 7.00 6.13 -2.91 -0.02 6.98 16 39 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 40 H 0.12 6.70 5.36 -2.91 -0.02 6.69 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.11 0.90 6.55 -2.39 -0.02 0.88 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -81.01 370.10 4.70 -76.31 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.01 Total: 27.08 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 6.93 Total: -2.04 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.67 Total: -86.70 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -1.59 Total: -57.52 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -81.01 4.70 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414358059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.545 kcal (2) G-P(sol) polarization free energy of solvation -81.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds