Wall clock time and date at job start Tue Mar 31 2020 17:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46603 * 2 1 4 4 N 1.46498 * 109.46504 * 180.02562 * 3 2 1 5 5 C 1.34530 * 126.69475 * 270.30235 * 4 3 2 6 6 O 1.21544 * 123.76481 * 359.95985 * 5 4 3 7 7 N 1.33781 * 112.46173 * 180.12906 * 5 4 3 8 8 C 1.40221 * 124.18101 * 179.86251 * 7 5 4 9 9 C 1.39237 * 119.93803 * 353.99839 * 8 7 5 10 10 C 1.38506 * 120.43347 * 179.97438 * 9 8 7 11 11 C 1.37675 * 120.31255 * 359.78866 * 10 9 8 12 12 C 1.40738 * 119.87698 * 0.46422 * 11 10 9 13 13 C 1.41403 * 120.21056 * 179.78926 * 12 11 10 14 14 H 1.08003 * 120.00005 * 154.98808 * 13 12 11 15 15 C 1.39937 * 120.00507 * 334.98371 * 13 12 11 16 16 N 1.30836 * 119.99565 * 341.90075 * 15 13 12 17 17 Si 1.86798 * 120.00298 * 161.89891 * 15 13 12 18 18 H 1.48497 * 109.47077 * 95.08220 * 17 15 13 19 19 H 1.48497 * 109.47199 * 335.07992 * 17 15 13 20 20 H 1.48503 * 109.47080 * 215.08053 * 17 15 13 21 21 C 1.38189 * 119.94461 * 174.01403 * 8 7 5 22 22 C 1.34772 * 111.64413 * 359.60325 * 7 5 4 23 23 O 1.21234 * 127.15712 * 180.26692 * 22 7 5 24 24 C 1.47318 * 126.69022 * 90.00455 * 4 3 2 25 25 H 1.09003 * 110.72934 * 61.44048 * 24 4 3 26 26 C 1.53001 * 110.59567 * 298.55589 * 24 4 3 27 27 O 1.42899 * 109.47429 * 299.37228 * 26 24 4 28 28 C 1.42897 * 114.00025 * 179.97438 * 27 26 24 29 29 H 1.08999 * 109.47364 * 299.99720 * 1 2 3 30 30 H 1.08998 * 109.47272 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46898 * 240.00468 * 2 1 3 33 33 H 1.08998 * 109.47272 * 119.99913 * 2 1 3 34 34 H 1.08996 * 109.47111 * 60.00599 * 3 2 1 35 35 H 1.08998 * 109.47235 * 299.99935 * 3 2 1 36 36 H 1.07999 * 119.78591 * 0.02562 * 9 8 7 37 37 H 1.07995 * 119.83806 * 179.97438 * 10 9 8 38 38 H 1.08008 * 120.05916 * 180.23240 * 11 10 9 39 39 H 0.96994 * 119.99847 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.15903 * 0.02562 * 21 8 7 41 41 H 1.09000 * 109.47239 * 59.37523 * 26 24 4 42 42 H 1.09002 * 109.46857 * 179.37358 * 26 24 4 43 43 H 1.09004 * 109.46979 * 179.97438 * 28 27 26 44 44 H 1.08992 * 109.47315 * 300.00188 * 28 27 26 45 45 H 1.08999 * 109.46785 * 60.00119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3092 1.4367 1.0777 6 8 3.9032 1.4312 2.2233 7 7 5.6058 1.4413 0.7483 8 6 6.6550 1.4396 1.6786 9 6 6.3786 1.5591 3.0380 10 6 7.4069 1.5581 3.9658 11 6 8.7147 1.4345 3.5535 12 6 9.0094 1.3184 2.1822 13 6 10.3504 1.1955 1.7506 14 1 10.5727 0.7170 0.8083 15 6 11.3895 1.6941 2.5444 16 7 11.1333 2.5675 3.4842 17 14 13.1420 1.1126 2.2621 18 1 13.8432 2.0695 1.3689 19 1 13.1221 -0.2310 1.6301 20 1 13.8541 1.0371 3.5631 21 6 7.9615 1.3198 1.2446 22 6 5.7791 1.4419 -0.5882 23 8 6.8315 1.4412 -1.1902 24 6 4.3846 1.4428 -1.1823 25 1 4.2241 2.3384 -1.7826 26 6 4.1568 0.1850 -2.0231 27 8 4.4545 -0.9722 -1.2395 28 6 4.2728 -2.2074 -1.9347 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 5.3555 1.6523 3.3712 37 1 7.1816 1.6517 5.0178 38 1 9.5131 1.4305 4.2808 39 1 11.8535 2.9134 4.0342 40 1 8.1768 1.2278 0.1902 41 1 3.1164 0.1473 -2.3461 42 1 4.8078 0.2094 -2.8970 43 1 4.5196 -3.0370 -1.2721 44 1 3.2347 -2.2945 -2.2554 45 1 4.9259 -2.2329 -2.8069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414358060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:03 Heat of formation + Delta-G solvation = -52.762808 kcal Electronic energy + Delta-G solvation = -29445.470985 eV Core-core repulsion = 25429.466673 eV Total energy + Delta-G solvation = -4016.004312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.34790 -38.43821 -38.32508 -37.29202 -36.10093 -35.37317 -33.88232 -32.89084 -30.26315 -29.76451 -28.98219 -26.72411 -26.21776 -25.34106 -24.25293 -22.53703 -21.95953 -21.32824 -20.03170 -19.87982 -17.94990 -17.24757 -16.67900 -16.51897 -16.16336 -15.87029 -15.34024 -15.25015 -14.92842 -14.88975 -14.78667 -14.48917 -14.12009 -13.76819 -13.34595 -13.09047 -12.86837 -12.84636 -12.62623 -12.34299 -12.13988 -12.09748 -11.69322 -11.58113 -11.49900 -11.37652 -11.10546 -11.02455 -10.90260 -10.81386 -10.46785 -9.95387 -9.88423 -9.83566 -9.40864 -9.08375 -8.95314 -8.91103 -7.42753 -7.00480 -6.70874 -4.30039 1.90962 2.31134 2.69053 2.86432 3.11469 3.13462 3.16859 3.25354 3.45144 3.70337 3.98714 4.06827 4.51431 4.62249 4.69727 4.79421 4.86935 4.99896 5.01378 5.09534 5.09760 5.15666 5.23448 5.38010 5.52240 5.54388 5.65355 5.74204 5.81035 5.99534 6.06428 6.10684 6.36741 6.48582 6.81951 6.85961 6.95232 7.06892 7.10065 7.27387 7.48526 7.63161 7.76494 8.05271 8.10093 8.12124 8.26160 8.52077 8.69209 8.94874 8.99845 10.24767 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003393 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.649194 B = 8249.142815 C = 9118.663962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.154 3.846 4 N -0.622 5.622 5 C 0.706 3.294 6 O -0.529 6.529 7 N -0.503 5.503 8 C 0.140 3.860 9 C -0.247 4.247 10 C -0.094 4.094 11 C -0.165 4.165 12 C 0.120 3.880 13 C -0.459 4.459 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.794 5.794 17 Si 0.908 3.092 18 H -0.271 1.271 19 H -0.260 1.260 20 H -0.276 1.276 21 C -0.234 4.234 22 C 0.529 3.471 23 O -0.452 6.452 24 C 0.093 3.907 25 H 0.137 0.863 26 C 0.063 3.937 27 O -0.379 6.379 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.280 0.720 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.439 -3.964 -11.282 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.033 3.967 4 N -0.361 5.361 5 C 0.410 3.590 6 O -0.403 6.403 7 N -0.238 5.238 8 C 0.052 3.948 9 C -0.268 4.268 10 C -0.114 4.114 11 C -0.185 4.185 12 C 0.117 3.883 13 C -0.489 4.489 14 H 0.097 0.903 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.184 1.184 20 H -0.201 1.201 21 C -0.255 4.255 22 C 0.315 3.685 23 O -0.321 6.321 24 C -0.015 4.015 25 H 0.154 0.846 26 C -0.015 4.015 27 O -0.298 6.298 28 C -0.062 4.062 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.998 -3.789 -10.582 20.379 hybrid contribution 0.727 -0.231 -0.424 0.873 sum -16.272 -4.019 -11.007 20.052 Atomic orbital electron populations 1.21698 0.95089 1.01997 1.01864 1.22024 0.95762 0.97084 1.03426 1.21339 0.74582 0.97329 1.03468 1.47642 1.05829 1.77909 1.04717 1.15804 0.80604 0.77503 0.85121 1.90833 1.76847 1.54325 1.18253 1.43676 1.07102 1.64598 1.08404 1.17569 0.84750 1.04969 0.87539 1.20884 1.00172 1.15207 0.90497 1.20575 0.93128 1.00623 0.97031 1.21423 0.94811 1.05875 0.96353 1.17406 0.92250 0.87790 0.90829 1.19520 0.90256 1.33759 1.05362 0.90330 1.25896 1.01604 0.92775 0.93819 1.69840 1.34968 1.20501 1.16631 0.86313 0.81443 0.80414 0.78635 1.19620 1.18408 1.20072 1.21288 0.89757 1.14103 1.00315 1.20439 0.90445 0.75375 0.82215 1.90738 1.30112 1.45137 1.66139 1.22254 0.88931 1.00200 0.90085 0.84558 1.22661 1.00828 0.84565 0.93429 1.88023 1.89263 1.13589 1.38886 1.22745 0.99572 0.86215 0.97649 0.92379 0.92735 0.92458 0.91586 0.91011 0.89258 0.89991 0.85277 0.88700 0.86310 0.90929 0.85762 0.91340 0.90780 0.89385 0.94116 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.31 6.13 -26.73 -0.16 -1.47 16 3 C 0.15 1.46 5.96 -4.04 -0.02 1.44 16 4 N -0.62 -8.35 2.65 -172.40 -0.46 -8.81 16 5 C 0.71 13.36 8.23 -88.03 -0.72 12.64 16 6 O -0.53 -11.34 14.32 5.33 0.08 -11.26 16 7 N -0.50 -10.59 2.83 -64.41 -0.18 -10.77 16 8 C 0.14 3.51 6.55 -83.67 -0.55 2.96 16 9 C -0.25 -6.21 9.27 -39.11 -0.36 -6.57 16 10 C -0.09 -2.38 10.02 -39.69 -0.40 -2.78 16 11 C -0.16 -4.48 8.69 -38.84 -0.34 -4.82 16 12 C 0.12 3.39 5.56 -106.85 -0.59 2.79 16 13 C -0.46 -12.74 9.05 -37.74 -0.34 -13.08 16 14 H 0.08 2.12 7.91 -52.48 -0.42 1.71 16 15 C 0.08 1.99 5.13 -17.34 -0.09 1.90 16 16 N -0.79 -21.08 11.01 55.55 0.61 -20.46 16 17 Si 0.91 19.24 29.60 -169.99 -5.03 14.21 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.23 -6.27 9.06 -38.70 -0.35 -6.62 16 22 C 0.53 9.73 7.04 -10.55 -0.07 9.66 16 23 O -0.45 -9.45 15.05 5.60 0.08 -9.37 16 24 C 0.09 1.14 3.86 -68.20 -0.26 0.88 16 25 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 26 C 0.06 0.63 5.04 37.16 0.19 0.82 16 27 O -0.38 -4.96 9.83 -35.23 -0.35 -5.31 16 28 C 0.03 0.32 11.01 101.05 1.11 1.43 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.57 6.02 -51.93 -0.31 0.26 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.13 3.19 5.15 -52.49 -0.27 2.92 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.12 3.27 6.20 -52.48 -0.33 2.95 16 39 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.12 3.35 5.34 -52.48 -0.28 3.07 16 41 H 0.07 0.48 6.96 -51.93 -0.36 0.12 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -33.73 370.51 -8.43 -42.16 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.17 Total: 5.48 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.60 Total: -1.45 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.03 Total: -40.05 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.19 Total: -25.94 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.73 -8.43 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414358060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds